LOC110493733 (LOC106564847)


Basic Information

Item Value
gene id LOC110493733
gene name LOC106564847
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 32108646 ~ 32146142 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036949735.1
ACATTGCCCATCGGGATCTACCAACATGCGGACGGACAGTGGACTGCCCCTTTAAGAAAAACTAAGTCAGAAAATATCACCCCTCCTCCTTCAGATCTCCACTTGGATGGTATTGCATCAAAGAAAACCTTCACTGGAGTTGCAAGTGATCGAGGAGACGATGGGGACTGTTTTTGAACATCTCTACATGAATATCTGAAGCATTCAAAGTGAAGGAAGAGCGCGACGAGTCATCATTAATTAAGCAACTTGACAACCTCGATGTTGATTGACAGCTTGCTTGTTGAGCGAGACTAGAGTCtcaatgtttttttctgtaaGGGGCATTTTACACCAGTCTCAAGCGTGAAGTCGTAGCCAGTGTCGCTTGTTTATGAACGGTCTCCAGGAAAAAGCGAAGGAGCGCTATATTGGATTGTGGTGTTTTTGTCTTTAGCTGGACTTATGCTGACGGTCTGGCAACCATCCTCTCTGGAGAGACGACCACAGTATTCATAATCTTGCATTTGGAGTTAGGTCTTTGTTTTTCCTCAGCCCTGGCCTCGTAGAACACGTTTAGAGTCCGATTGGAATCGGCTAGAGTGACAGGCCGATGGCGCAACGGTATGAAGACCTTCCCCACTATGGAATGGACGGAGTAGGGCTGCCCTCGACTATGTACGGGGACCCTCATGCAGCGCGCTCCATGCAGGCGGTTCACCTGAACCACGGGCCCCAGTTCCACTCGCACCAGTACCCGCACTCAACACACGCCAGTGCCATACCGCCCAGTATGGGCTCCTCTGTCAACGACGCCATAAAAAGAGACAAAGATGCCATTTACGGGCATCCCCTTTTCCCACTTCTAGCACTGATTTTTGAAAAATGTGAATTAGCAACTTGCACGCCGAGAGAAACTGGGGTCGCTGGAGGCGACGTGTGTTCCTCGGAGTCTTTCAATGAGGATATAGCAGTATTTTCAAAACAGATTCGATCAGAGAAGCCTATATTTTCATCAAATCCAGAAATTGATAATTTGATGATACAAGCAATTCAAGTATTACGGTTTCATCTGCTCGAGCTGGAGAAGGTACACGAGCTATGCGATAATTTCTGTCATCGATACATCAGCTGCTTGAAAGGAAAAATGCCCATTGATTTGGTCATAGACGACAGGGACGGTGGAAATAAATCTGACAGTGAAGATTTTACAAGATCGTCTGGGCCTCTTGATCAGATCTCGTGGAGCAGAGACCACGATGACACGGCGTCAGTTCGCTCGGCGGGGACGCCCGGGCCCTCCAGTGGGGGACACACGTCACACAGTGGGGACAACAACAGTGAAGAAGGTGACTGCATGGACAACGGGGTGGCCTCTCCCAGCACTGGGGACGATGACGACCCTGACAAGGAAAAGAGGGATCGTCACAACAAGAAGCGAGGAATCTTCCCTAAAGTGGCCACCAACATCATGAGGGCGTGGCTCTTCCAGCACTTGACACATCCTTACCCTTCGGAAGAGCAGAAGAAACAACTGGCCCAGGACACGGGGTTAACGATCCTACAAGTCAACAATTGgtTCATCAACGCGAGACGAAGAATAGTACAGCCCATGATCGACCAGTCCAATAGAGCAGATGGTCAACCAATGGGAGGGTTCGTCATGGACGGCCAGACACACATGGGAATCAGACCACCTGGGCCCATGGGTGGGATGGGTATGGGTGTGGAGGGACAGTGGCATTACATGTGACCCCTTGCTAACGGACTTAGCACAGAGCCCAAGGGGACGCACTCAGAACTGCCAGGTATTCCCGAGGATGGCGTGTCCCGTGATGGTCCGATCAGCACGGATACGGGCATCGCTCTGACCTCCACGGGTGCCCCTACCATCACCTCTACCCTCCCACCAACCAGCCCCGCCACTGGGGCATGATCTCTCGGTGCTGCCCCTCCCTCAGTGACTCTTCCGTGACCCAGCGATATCGATTGCGCTGGTGCCCAGCCCAAACTCACCACCATCGCCTGACTGTTTGTCAGTGGGGCTTGTGACTCCCCCTTCTCCAACTCCCCCCATTTCCTTAAAGTGGTTCAATTTGAGTACCACTGTTGCTGAACCACCACCCTGACTATGAGAGGCCTTGGAAACTCCATCATGCCTTGTGAGGACTTCTTACATTGTGAGGACTTCTTACATTGTGAGGACTTCTTACATTGTGAGGACTTCCCTTCTGGGGACTACAATTACTGGAGCTCTCCAGTGGATACTTCGATACTGTGTTAATTCAATACAAACAAACAATTAGTCCTTCACTTTTCCCTCCTCTGCTGCATGGCATGGACAGTTATAGAGGGTGAAGGTACTCTTATCTTGGCAGTGGACTTGTACCAAGAAAAGAAGCTGATGTCTGTATTTCCTGGAGGGTCTTTTTAAAACAACAGACACCCtggaaaccatttttttttttttaataatgaaATTGTTGTAATTCTGGGAAAGGACAATAAGGTGAGGCAATAGTGTGCTGTTTACTGTTTTACCACAGACTCTCTGCGGATGAGTAACGATAACTATTGTAAGTGCTCTGGTATTGCTTTGCCGTACTctggtgtttaaaaaaaaaaaaaaaggacttCTTGACTTGTCGCATTCACACTATGTGTGTGAGTCTTTTTTCATAGACTATTATCTCCTACCCCCACGAATCTCTTTGCgtttgaaaataaaaaatacattacagGA
>XM_021568165.2
TGCCCATCGGGATCTACCAACATGCGGACGGACAGTGGACTGCCCCTTTAAGAAAAACTAAGTCAGAAAATATCACCCCTCCTCCTTCAGATCTCCACTTGGATGGTATTGCATCAAAGAAAACCTTCACTGGAGTTGCAAGTGATCGAGGAGACGATGGGGACTGTTTTTGAACATCTCTACATGAATATCTGAAGCATTCAAAGTGAAGGAAGAGCGCGACGAGTCATCATTAATTAAGCAACTTGACAACCTCGATGTTGATTGACAGCTTGCTTGTTGAGCGAGACTAGAGTCtcaatgtttttttctgtaaGGGGCATTTTACACCAGTCTCAAGCGTGAAGTCGTAGCCAGTGTCGCTTGTTTATGAACGGTCTCCAGGAAAAAGCGAAGGAGCGCTATATTGGATTGTGGTGTTTTTGTCTTTAGCTGGACTTATGCTGACGGTCTGGCAACCATCCTCTCTGGAGAGACGACCACAGTATTCATAATCTTGCATTTGGAGTTAGGTCTTTGTTTTTCCTCAGCCCTGGCCTCGTAGAACACGTTTAGAGTCCGATTGGAATCGGCTAGAGTGACAGGCCGATGGCGCAACGGTATGAAGACCTTCCCCACTATGGAATGGACGGAGTAGGGCTGCCCTCGACTATGTACGGGGACCCTCATGCAGCGCGCTCCATGCAGGCGGTTCACCTGAACCACGGGCCCCAGTTCCACTCGCACCAGTACCCGCACTCAACACACGCCAGTGCCATACCGCCCAGTATGGGCTCCTCTGTCAACGACGCCATAAAAAGAGACAAAGATGCCATTTACGGGCATCCCCTTTTCCCACTTCTAGCACTGATTTTTGAAAAATGTGAATTAGCAACTTGCACGCCGAGAGAAACTGGGGTCGCTGGAGGCGACGTGTGTTCCTCGGAGTCTTTCAATGAGGATATAGCAGTATTTTCAAAACAGATTCGATCAGAGAAGCCTATATTTTCATCAAATCCAGAAATTGATAATTTGATGATACAAGCAATTCAAGTATTACGGTTTCATCTGCTCGAGCTGGAGAAGGTACACGAGCTATGCGATAATTTCTGTCATCGATACATCAGCTGCTTGAAAGGAAAAATGCCCATTGATTTGGTCATAGACGACAGGGACGGTGGAAATAAATCTGACAGTGAAGATTTTACAAGATCGTCTGGGCCTCTTGATCAGATCTCGTGGAGCAGAGACCACGATGACACGGCGTCAGTTCGCTCGGCGGGGACGCCCGGGCCCTCCAGTGGGGGACACACGTCACACAGTGGGGACAACAACAGTGAAGAAGGTGACTGCATGGACAACGGGGTGGCCTCTCCCAGCACTGGGGACGATGACGACCCTGACAAGGAAAAGAGGGATCGTCACAACAAGAAGCGAGGAATCTTCCCTAAAGTGGCCACCAACATCATGAGGGCGTGGCTCTTCCAGCACTTGACACATCCTTACCCTTCGGAAGAGCAGAAGAAACAACTGGCCCAGGACACGGGGTTAACGATCCTACAAGTCAACAATTGgtTCATCAACGCGAGACGAAGAATAGTACAGCCCATGATCGACCAGTCCAATAGAGCAGTGACTGGAGGAGGGCCCTACACCCCAGATGGTCAACCAATGGGAGGGTTCGTCATGGACGGCCAGACACACATGGGAATCAGACCACCTGGGCCCATGGGTGGGATGGGTATGGGTGTGGAGGGACAGTGGCATTACATGTGACCCCTTGCTAACGGACTTAGCACAGAGCCCAAGGGGACGCACTCAGAACTGCCAGGTATTCCCGAGGATGGCGTGTCCCGTGATGGTCCGATCAGCACGGATACGGGCATCGCTCTGACCTCCACGGGTGCCCCTACCATCACCTCTACCCTCCCACCAACCAGCCCCGCCACTGGGGCATGATCTCTCGGTGCTGCCCCTCCCTCAGTGACTCTTCCGTGACCCAGCGATATCGATTGCGCTGGTGCCCAGCCCAAACTCACCACCATCGCCTGACTGTTTGTCAGTGGGGCTTGTGACTCCCCCTTCTCCAACTCCCCCCATTTCCTTAAAGTGGTTCAATTTGAGTACCACTGTTGCTGAACCACCACCCTGACTATGAGAGGCCTTGGAAACTCCATCATGCCTTGTGAGGACTTCTTACATTGTGAGGACTTCTTACATTGTGAGGACTTCTTACATTGTGAGGACTTCCCTTCTGGGGACTACAATTACTGGAGCTCTCCAGTGGATACTTCGATACTGTGTTAATTCAATACAAACAAACAATTAGTCCTTCACTTTTCCCTCCTCTGCTGCATGGCATGGACAGTTATAGAGGGTGAAGGTACTCTTATCTTGGCAGTGGACTTGTACCAAGAAAAGAAGCTGATGTCTGTATTTCCTGGAGGGTCTTTTTAAAACAACAGACACCCtggaaaccatttttttttttttaataatgaaATTGTTGTAATTCTGGGAAAGGACAATAAGGTGAGGCAATAGTGTGCTGTTTACTGTTTTACCACAGACTCTCTGCGGATGAGTAACGATAACTATTGTAAGTGCTCTGGTATTGCTTTGCCGTACTctggtgtttaaaaaaaaaaaaaaaggacttCTTGACTTGTCGCATTCACACTATGTGTGTGAGTCTTTTTTCATAGACTATTATCTCCTACCCCCACGAATCTCTTTGCgtttgaaaataaaaaatacattacagGA
>XM_021568166.2
TGCCCATCGGGATCTACCAACATGCGGACGGACAGTGGACTGCCCCTTTAAGAAAAACTAAGTCAGAAAATATCACCCCTCCTCCTTCAGATCTCCACTTGGATGGTATTGCATCAAAGAAAACCTTCACTGGAGTTGCAAGTGATCGAGGAGACGATGGGGACTGTTTTTGAACATCTCTACATGAATATCTGAAGCATTCAAAGTGAAGGAAGAGCGCGACGAGTCATCATTAATTAAGCAACTTGACAACCTCGATGTTGATTGACAGCTTGCTTGTTGAGCGAGACTAGAGTCtcaatgtttttttctgtaaGGGGCATTTTACACCAGTCTCAAGCGTGAAGTCGTAGCCAGTGTCGCTTGTTTATGAACGGTCTCCAGGAAAAAGCGAAGGAGCGCTATATTGGATTGTGGTGTTTTTGTCTTTAGCTGGACTTATGCTGACGGTCTGGCAACCATCCTCTCTGGAGAGACGACCACAGTATTCATAATCTTGCATTTGGAGTTAGGTCTTTGTTTTTCCTCAGCCCTGGCCTCGTAGAACACGTTTAGAGTCCGATTGGAATCGGCTAGAGTGACAGGCCGATGGCGCAACGGTATGAAGACCTTCCCCACTATGGAATGGACGGAGTAGGGCTGCCCTCGACTATGTACGGGGACCCTCATGCAGCGCGCTCCATGCAGGCGGTTCACCTGAACCACGGGCCCCAGTTCCACTCGCACCAGTACCCGCACTCAACACACGCCAGTGCCATACCGCCCAGTATGGGCTCCTCTGTCAACGACGCCATAAAAAGAGACAAAGATGCCATTTACGGGCATCCCCTTTTCCCACTTCTAGCACTGATTTTTGAAAAATGTGAATTAGCAACTTGCACGCCGAGAGAAACTGGGGTCGCTGGAGGCGACGTGTGTTCCTCGGAGTCTTTCAATGAGGATATAGCAGTATTTTCAAAACAGATTCGATCAGAGAAGCCTATATTTTCATCAAATCCAGAAATTGATAATTTGATGATACAAGCAATTCAAGTATTACGGTTTCATCTGCTCGAGCTGGAGAAGGTACACGAGCTATGCGATAATTTCTGTCATCGATACATCAGCTGCTTGAAAGGAAAAATGCCCATTGATTTGGTCATAGACGACAGGGACGGTGGAAATAAATCTGACAGTGAAGATTTTACAAGATCGTCTGGGCCTCTTGATCAGATCTCGTGGAGCAGAGACCACGATGACACGGCGTCAGTTCGCTCGGCGGGGACGCCCGGGCCCTCCAGTGGGGGACACACGTCACACAGTGGGGACAACAACAGTGAAGAAGGTGACTGCATGGACAACGGGGTGGCCTCTCCCAGCACTGGGGACGATGACGACCCTGACAAGGAAAAGAGGGATCGTCACAACAAGAAGCGAGGAATCTTCCCTAAAGTGGCCACCAACATCATGAGGGCGTGGCTCTTCCAGCACTTGACACATCCTTACCCTTCGGAAGAGCAGAAGAAACAACTGGCCCAGGACACGGGGTTAACGATCCTACAAGTCAACAATTGgtTCATCAACGCGAGACGAAGAATAGTACAGCCCATGATCGACCAGTCCAATAGAGCAGTGACTGGAGGAGGGCCCTACACCCCAGATGGTCAACCAATGGGAGGGTTCGTCATGGACGGCCAGACACACATGGGAATCAGACCACCTGGGCCCATGGGTGGGATGGGTATGGGTGTGGAGGGACAGTGGCATTACATGTGACCCCTTGCTAACGGACTTAGCACAGAGCCCAAGGGGACGCACTAACTGCCAGGTATTCCCGAGGATGGCGTGTCCCGTGATGGTCCGATCAGCACGGATACGGGCATCGCTCTGACCTCCACGGGTGCCCCTACCATCACCTCTACCCTCCCACCAACCAGCCCCGCCACTGGGGCATGATCTCTCGGTGCTGCCCCTCCCTCAGTGACTCTTCCGTGACCCAGCGATATCGATTGCGCTGGTGCCCAGCCCAAACTCACCACCATCGCCTGACTGTTTGTCAGTGGGGCTTGTGACTCCCCCTTCTCCAACTCCCCCCATTTCCTTAAAGTGGTTCAATTTGAGTACCACTGTTGCTGAACCACCACCCTGACTATGAGAGGCCTTGGAAACTCCATCATGCCTTGTGAGGACTTCTTACATTGTGAGGACTTCTTACATTGTGAGGACTTCTTACATTGTGAGGACTTCCCTTCTGGGGACTACAATTACTGGAGCTCTCCAGTGGATACTTCGATACTGTGTTAATTCAATACAAACAAACAATTAGTCCTTCACTTTTCCCTCCTCTGCTGCATGGCATGGACAGTTATAGAGGGTGAAGGTACTCTTATCTTGGCAGTGGACTTGTACCAAGAAAAGAAGCTGATGTCTGTATTTCCTGGAGGGTCTTTTTAAAACAACAGACACCCtggaaaccatttttttttttttaataatgaaATTGTTGTAATTCTGGGAAAGGACAATAAGGTGAGGCAATAGTGTGCTGTTTACTGTTTTACCACAGACTCTCTGCGGATGAGTAACGATAACTATTGTAAGTGCTCTGGTATTGCTTTGCCGTACTctggtgtttaaaaaaaaaaaaaaaggacttCTTGACTTGTCGCATTCACACTATGTGTGTGAGTCTTTTTTCATAGACTATTATCTCCTACCCCCACGAATCTCTTTGCgtttgaaaataaaaaatacattacagGA

Function

NR:

description
homeobox protein Meis1-like isoform X1

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0045766 positive regulation of angiogenesis biological_process
GO:0000082 G1/S transition of mitotic cell cycle biological_process
GO:0009880 embryonic pattern specification biological_process
GO:0048844 artery morphogenesis biological_process
GO:0030223 neutrophil differentiation biological_process
GO:0030225 macrophage differentiation biological_process
GO:0060216 definitive hemopoiesis biological_process
GO:0035907 dorsal aorta development biological_process
GO:0001885 endothelial cell development biological_process
GO:0072554 blood vessel lumenization biological_process
GO:0050821 protein stabilization biological_process
GO:0048703 embryonic viscerocranium morphogenesis biological_process
GO:0001947 heart looping biological_process
GO:0035476 angioblast cell migration biological_process
GO:0060319 primitive erythrocyte differentiation biological_process
GO:0060059 embryonic retina morphogenesis in camera-type eye biological_process
GO:0060841 venous blood vessel development biological_process
GO:0005829 cytosol cellular_component
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0005515 protein binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K15613 MEIS1; homeobox protein Meis1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036949735.1 False 2722 mRNA 0.49 13 32108646 32146142
XM_021568165.2 False 2745 mRNA 0.49 13 32108650 32146142
XM_021568166.2 True 2742 mRNA 0.49 13 32108650 32146142

Neighbor

gene id symbol gene type direction distance location
LOC110493731 LOC106585927 coding upstream 65879 32018424 ~ 32042767 (+)
LOC110493728 LOC106585894 coding upstream 118210 31976595 ~ 31990436 (+)
LOC110493164 LOC106564854 coding upstream 132430 31973440 ~ 31976221 (+)
LOC110493726 ugpa coding upstream 216550 31873655 ~ 31892096 (+)
cmdg LOC106585868 coding upstream 236881 31860343 ~ 31871765 (+)
etaa1 LOC106564845 coding downstream 24163 32170305 ~ 32174711 (+)
aplf aplf coding downstream 106283 32252425 ~ 32268211 (+)
LOC110493739 LOC106564840 coding downstream 135538 32281680 ~ 32312639 (+)
LOC110493741 LOC106564836 coding downstream 183949 32330091 ~ 32340259 (+)
ero1b LOC106586106 coding downstream 206807 32352949 ~ 32378308 (+)
G1439288 NA non-coding upstream 45423 32060800 ~ 32063223 (+)
G1439286 NA non-coding upstream 54612 32053796 ~ 32054034 (+)
G1439285 NA non-coding upstream 55547 32052843 ~ 32053099 (+)
G1439284 NA non-coding upstream 55958 32052485 ~ 32052688 (+)
G1439282 NA non-coding upstream 57950 32050468 ~ 32050696 (+)
G1439320 NA non-coding downstream 951 32147093 ~ 32148111 (+)
G1439346 NA non-coding downstream 33625 32179767 ~ 32182012 (+)
G1439367 NA non-coding downstream 64431 32210573 ~ 32210801 (+)
G1439402 ru2b non-coding downstream 128824 32274966 ~ 32281458 (+)
G1439438 NA non-coding downstream 202811 32348953 ~ 32349315 (+)
G1438941 LOC106564856 other upstream 201148 31906522 ~ 31907498 (+)
G1438880 NA other upstream 403482 31702494 ~ 31705164 (+)
G1437911 LOC106564885 other upstream 1175062 30927247 ~ 30933584 (+)
G1437734 NA other upstream 1442639 30665171 ~ 30666007 (+)
rbm34 LOC106564828 other downstream 454094 32562173 ~ 32662021 (+)
G1439962 LOC106564826 other downstream 566718 32712860 ~ 32766707 (+)
G1440066 NA other downstream 650956 32797098 ~ 32797432 (+)
G1440162 NA other downstream 805658 32951800 ~ 32956057 (+)

Expression


Co-expression Network