XLOC_033258 (cbfa2t2)


Basic Information

Item Value
gene id XLOC_033258
gene name cbfa2t2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 57634360 ~ 57722862 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00064561
TAATTTACACCTTAGGATTGAAACATGCCATTAATTTGTGTGCACGAAAGTGGGACAGTTTGCAGATGATGAACTTTTGGTGAGCTCTCCTCCCTCAGTGTCTTAATGTCAGACAGAATGAGATCAGAGATGTTCTGCTGCCACCGATCTGCCACGTTGATTGGGTTTTAATGGAAATCTCCACATGCACAAACAGAACCGTTGGTGATTAGAGGGAAATCAGTGATGTGTCAGTCTGAGCTCATTCTGTGTCTGGCTCTGATTTGCAGACAGTGCAGAGAAGAAGGTTCCTGCCATGCCCGGTTCCCCAGTGGATGCAAAGACTCATTCCAGACCGACCGTCTCCGTCATGCCACCGCTGCCCTCCGTCAACCCCAGCGGACCTCGTCCCGCAGCCTTCTCCACTACTGCATTAACCAATGGGATCAATCATTCCCCGCCGATGCTCAACGCCATTCCCTCTCCTCCTCAGCGCTATAGCAACGGCCCTTCCTCATCATCCTCCTCTTCCCTGGCCAATCAGCAGCTTCCGGCCACATGCGGCGCTCGACAGCTCAGCAAACTCAAGCGCTTCCTTACCACACTGCAGCAGTTCGGCAATGACATCTCGCCTGAGATCGGAGAGAGCGTCCGCAACCTGGTGCTGGCGCTGGTGAACTCCACCGTCACCATTGAAGAGTTTCACTCCAGACTGCAGGAAGCCACAAACTTCCCACTGAGGCCCTTCGTCATACCGTTTCTGAAGGCTAACTTGCCTTTACTGCAGCGGGAGCTTCTGCACTGCGCTCGGGCCGCCAAACAGACTCCAGCGCAGTATCTGTCCCAACATGAGCATCTTCTGCTCAGCACCACCGTCCCGTCACCAGCAGACTCCAGCGAACTCCTGCTCGAGCCCAGCGACAGCAAACGGCACAGTCCcaacagGAGTAAAGAGAATGGTTTTCACGATCGACCTCCCGCCTCTCTGGAGCCTCCAGCCAAACGAATCTGCACCATAAGCCCCGCCCCCAGGCATAGTCCCGCCCATCCGTTGCAGCTCCCCGCCCAGATACACCCGACTCCGCCCCCACTGCAGCACTATGCCCTGGAGGACATCAGCAGTGCTCAGCTGTACAGAGAACCACAGCGCATCCTGGAGCTGAAGGAGCGCCCGCGACTCactgGCAGTAACGGAGGCTACCGAGAGGAGCCTGTAGACCACAGACTGACGGAGAGAGAGTGGGCTGAGGAATGGAGACATCTGGATCATGTGCTCAACAGTATTGTGGATATGGTGGAGAAGACGCGGCGTTCGGTCAGCGTCCTGCGCCGCTGTCAGGAGTCCGACCGAGAGGAGCTCAATTTCTGGCGCCGTCGCTCAAACCCACATGACGAGGGACGCAAGAATGGGAACACACCCGTAAACATCCCGTTCAGCAAAACACACAGCCCTCTGTCAGCAGAAGGAGTCAATGCAGACTCTCCGAGGGACGTTCCCCTGCGCGCATCCTCTGGATACGTGCCTGATGAGATCTGGAGGAAAGCCGAGGAGGCAGTGAATGAGGTGAAGCGTCAGGCGATGGATGAGGTTCAGAAAGCCGTGGCTGAAGCCGAACAGAAAGCCTTCGAGATGATCACAGCCGAGAGAGCAAAGATGGAGAAAACCCTCGCTGAAGCCAAGAGGAAGGCCACCGAAGACGCCATACAGGTCATCAATGAGCAGGAGGACTCCAGCGAGtGCTGCTGGAACTGTGGTCGTAAAGCGAGCGAGACGTGCAGCGGCTGTAACGCGGCCCGATACTGCGGCTCCTTCTGCCAGCATAAAGACTGGGAGCGACACCATCTGATCTGCAGCCCAGGCCTCCAGAACCAGCCCAAAACCATGAGCCGCAGCCAGGCCAAAACCCCCATCCCGAGCCCCAGCCTGGAGAAGAACAGCTCCAGAGCGTCCACACCATCCACACCTGCGTCCGCCTCTACACCAGACACCAGCGCACACTAAAACACAAGGAGAAATATCTGAACACAAAACAGTAAAACACTAAACAGATGACGGATCAGACGGAGGATGGAGTTTGCTCACTTTTCAGACGCTGTTTTATTTGGTGCAAAAACTCCTGGAGATTCAATCTACCGCACAAAAAAAGTTGTCAGTGTTTTGTGAgagatgtttgtttgtgtgtgtgagggatTGTTTCTGTAAATACAATATCAGagcaatataaaaaacaaaacaaaagtgacGGATTCACCAAAGCTGTCAATGCTGTGACATGTTTATCATTACTATATGACGATATTATCAGAGTTCAGATGGAAAGTGAGTGTGGCAACCAGTATAGAAATCTGATAcgtgcacatatatatatatatatata
>TCONS_00064562
ATGGATGAGGTTCAGAAAGCCGTGGCTGAAGCCGAACAGAAAGCCTTCGAGATGATCACAGCCGAGAGAGCAAAGATGGAGAAAACCCTCGCTGAAGCCAAGAGGAAGGCCACCGAAGACGCCATACAGGTCATCAATGAGCAGGAGGACTCCAGCGAGtGCTGCTGGAACTGTGGTCGTAAAGCGAGCGAGACGTGCAGCGGCTGTAACGCGGCCCGATACTGCGGCTCCTTCTGCCAGCATAAAGACTGGGAGCGACACCATCTGATCTGCAGCCCAGGCCTCCAGAACCAGCCCAAAACCATGAGCCGCAGCCAGGCCAAAACCCCCATCCCGAGCCCCAGCCTGGAGAAGAACAGCTCCAGAGCGTCCACACCATCCACACCTGCGTCCGCCTCTACACCAGACACCAGCGCACACTAA
>TCONS_00064563
ACAGTGCAGAGAAGAAGGTTCCTGCCATGCCCGGTTCCCCAGTGGATGCAAAGACTCATTCCAGACCGACCGTCTCCGTCATGCCACCGCTGCCCTCCGTCAACCCCAGCGGACCTCGTCCCGCAGCCTTCTCCACTACTGCATTAACCAATGGGATCAATCATTCCCCGCCGATGCTCAACGCCATTCCCTCTCCTCCTCAGCGCTATAGCAACGGCCCTTCCTCATCATCCTCCTCTTCCCTGGCCAATCAGCAGCTTCCGGCCACATGCGGCGCTCGACAGCTCAGCAAACTCAAGCGCTTCCTTACCACACTGCAGCAGTTCGGCAATGACATCTCGCCTGAGATCGGAGAGAGCGTCCGCAACCTGGTGCTGGCGCTGGTGAACTCCACCGTCACCATTGAAGAGTTTCACTCCAGACTGCAGGAAGCCACAAACTTCCCACTGAGGCCCTTCGTCATACCGTTTCTGAAGGTAAATGACtagaaaactaaaactaaaccaaaacattGATTAAGTAATACCGAATTTGGTAATACTGGTATCCATGAAAgtgttttattagatttttttttatatttaacccTCAAAGACTCAAACACAGACAAAGATCTCCTTTTTTGACcttgtttttaattattgaaaatgttATATTGTAACAGCCCTGCAGgcacatgacgtcatattgatgttgtaccccaacatcgtgggggCGTTGgattttatttgcaaa
>TCONS_00064564
ATCTACTGAAGAGCTACAAATCACGCGCGCGCTTTCTGCGAGGGTAAATATCAGAATGGTCGGGATTCCGGGCGCGTTCCAATACAGTGCAGAGAAGAAGGTTCCTGCCATGCCCGGTTCCCCAGTGGATGCAAAGACTCATTCCAGACCGACCGTCTCCGTCATGCCACCGCTGCCCTCCGTCAACCCCAGCGGACCTCGTCCCGCAGCCTTCTCCACTACTGCATTAACCAATGGGATCAATCATTCCCCGCCGATGCTCAACGCCATTCCCTCTCCTCCTCAGCGCTATAGCAACGGCCCTTCCTCATCATCCTCCTCTTCCCTGGCCAATCAGCAGCTTCCGGCCACATGCGGCGCTCGACAGCTCAGCAAACTCAAGCGCTTCCTTACCACACTGCAGCAGTTCGGCAATGACATCTCGCCTGAGATCGGAGAGAGCGTCCGCAACCTGGTGCTGGCGCTGGTGAACTCCACCGTCACCATTGAAGAGTTTCACTCCAGACTGCAGGAAGCCACAAACTTCCCACTGAGGCCCTTCGTCATACCGTTTCTGAAGGTAAATGACtagaaaactaaaactaaaccaaaacattGATTAAGTAATACCGAATTTGGTAATACTGGTATCCATGAAAgtgttttattagatttttttttatatttaacccTCAAAGACTCAAACACAGACAAAGATCTCCTTTTTTGACcttgtttttaattattgaaaatgttATATTGTAACAGCCCTGCAGgcacatgacgtcatattgatgttgtaccccaacatcgtgggggCGTTGgattttatttgc
>TCONS_00065259
gtgttcagaCTCCTatcaagaaacacaaacacacacgagtCCGTGGATCTACTGAAGAGCTACAAATCACGCGCGCGCTTTCTGCGAGGGTAAATATCAGAATGGTCGGGATTCCGGGCGCGTTCCAATgTGTTCTCTATACACACTCTAGCTGAACCACCTGCaaacacaggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgcgtgtgccaATAACACAGCTGCTCTTCTGCCTAGAGGCCAAAAATGGAGGAGAATTCAGAATAAACACAGGTGTGGTGTAACAGAACAAGAGAAACGTCTGCTTTCACACTGTTT

Function

symbol description
cbfa2t2 Predicted to enable transcription corepressor activity. Predicted to be involved in negative regulation of transcription, DNA-templated. Predicted to act upstream of or within transcription, DNA-templated. Predicted to be active in nucleus. Orthologous to human CBFA2T2 (CBFA2/RUNX1 partner transcriptional co-repressor 2).

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0045892 negative regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003714 transcription corepressor activity molecular_function

KEGG:

id description
ko04990 Domain-containing proteins not elsewhere classified

ZFIN:

id description
ZDB-GENE-070209-1 Predicted to enable transcription corepressor activity. Predicted to be involved in negative regulation of transcription, DNA-templated. Predicted to act upstream of or within transcription, DNA-templated. Predicted to be active in nucleus. Orthologous to human CBFA2T2 (CBFA2/RUNX1 partner transcriptional co-repressor 2).

Ensembl:

ensembl_id ENSDARG00000074337

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00064561 False 2357 mRNA 0.53 10 57634360 57655299
TCONS_00064562 False 423 mRNA 0.59 2 57634736 57635577
TCONS_00064563 False 735 mRNA 0.49 3 57651503 57655030
TCONS_00064564 False 815 mRNA 0.49 4 57651506 57722816
TCONS_00065259 True 320 lncRNA 0.48 2 57697135 57722862

Neighbor

gene id symbol gene type direction distance location
XLOC_033257 CU693502.1 coding downstream 3196 57630414 ~ 57631164 (-)
XLOC_033256 NA coding downstream 12491 57620905 ~ 57621869 (-)
XLOC_033255 itcha coding downstream 95219 57491794 ~ 57539141 (-)
XLOC_033254 snrpb coding downstream 148949 57478337 ~ 57485411 (-)
XLOC_033253 ddx27 coding downstream 157895 57436314 ~ 57476465 (-)
XLOC_033259 CABZ01087330.2 coding upstream 46680 57769542 ~ 57769658 (-)
XLOC_033260 NA coding upstream 64858 57787720 ~ 57790025 (-)
XLOC_033261 tox2 coding upstream 177375 57900237 ~ 58149165 (-)
XLOC_033262 NA coding upstream 358773 58081635 ~ 58082635 (-)
XLOC_033263 NA coding upstream 947843 58670705 ~ 58672580 (-)
XLOC_033251 CABZ01034962.1 non-coding downstream 370715 57263510 ~ 57263645 (-)
XLOC_033250 NA non-coding downstream 511450 57108325 ~ 57122910 (-)
XLOC_033249 NA non-coding downstream 526172 56954940 ~ 57108188 (-)
XLOC_033264 NA non-coding upstream 1008436 58731298 ~ 58733557 (-)

Expression


Co-expression Network