LOC110493746 (LOC106564833)


Basic Information

Item Value
gene id LOC110493746
gene name LOC106564833
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 32447495 ~ 32478576 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036949744.1
gtagaagaagacgCTTCTTCAACAACAACACGGCTACTGATTCAGCCATCTCTGTACCGGTAGCTTGTTAGCCAACATAAAACCGACCCATTGCATCACTTTAGACCATTTTTTTACATGAATAGTAGTGTTTCAAACCCAATTCGGATAACGTATGTACTAGTTGATTTAAACGGAATTTGCAATTTAAGATTGATACTGAGCCTAGCACCAGGGCAGTCgctcatgctagctagctaacatccccgacAATGAGCTCACAAAGCTTCTCCCCCGCTGCTGAAAAAGAGGTCTGCTGGACAGAGAAAGAACCTCTGGGGCTGAACATTGTCGTAAAAGAAGAAGACGGGGATACAGtaaaaggagaggaagaagcttTCAGAACGACGAATGAGAAAGAAGAGGCTATCACATTGAAAGAAGAAGAGGGGGCTGTTATGGTGAACGAAGAGAAAGGACCTTTTGTAGTGAAAGAGGAAGTAGACGAATTCAGAATGAAAGAGGAGACTATCACattgaaagaagaagaagaagaatattgTATAATGAAAGAGGAAGAGATGGCTATCTCAATAAAGgaggaggaagacgttttggaACTGAaagaggaggcaggaggggagaCTGAAGACACCAAACCTAGGCAAAATGCTGTTTTCTGGCCCTCCCAGGGCTGTATAGTGAAACAGGACATCAGAAAGATACAGGAAGAATATAGTGTGGCTCCCATGAGTCCCAGCCAGACTGTTGATGATGATGGCAATGTTATTCACTGCAATGAAGAATGGGACATGGAGGACAAGGATTGGTTTCCTAGCAACCGGCTGGAGGACACGTCTTTCccgcccccctcccctctcccggAGTCCCCAGGTCGTGCCTCACTGTGGGGTCTGAAGAGGGTGTCTGTGTGGCTAGTCGATTGCAGGAAAACAccagggctgagtggaactgcgAGAGAAGGAGATGAAAAGGGAGATTCAGATTCAATGTCATCAGgagagagacTAGACTCTCACTCGAACAGCGGAAAGTGTACTTCAGGGAAACCAGACCCAGAGATGCCCAAACCAGCGAGACAACACCGCTGCTcgcagtgtggaaagagttttactaaGTTACGGAACCTAACAGATCatgaaagaatacacacaggagaaaagccttaccactgctcacaatgtggaaagagttttactcagtcagGGCACCTAAAAACACATGAGAGGAcgcacacaggagaaaagccttacccctgctcccaatgtggaaagactTTTACCCGGTTAGGGCACCTTAAAGACCATAAGAGAACGCATaaaggggagaagccttaccactgctttCAGTGCGGAAAGAGTTTCACCCAGTCAGGGAACCTGAGAacgcatgagagaatacacactgggaaaaaaaacacacaccctGTAGAGAGGCCTTTCCAATGCgctcagtgtggaaagagatttaTCCGGTCAACTCATCTGAAAGAGcataagagaacacacacaggagaaaaaacATTCCAATGCActcagtgtggaaagggttttacttGGTTATGGACCCTGAAAGACCAtgaaagaacacacacaggagataagcCTTTCCAATGCTTCCTGTGTGGAAAAAGTTTTACCCATTTAGGGAACTTAAAAATgcacaagagaatacacacaggagagaagcctcaccactgctcccagtgtggaaagagttttacccagttAGGGCACCTGACAAcacatgagaggacacacacaggagagaagcctttctactgctccctgtgtggaaagagttttactgaGTTAGGGAGCCTGAAAAAACACAACAGAATACAcaaaggagagaagcctttccagTGCTCCCTGTgcggaaagagttttacccagttAGGTAGCCTGAAAACACATGAGtggacacacacagaagagaagcCTCACCTCTGCTCACAGTGTGGAAGGGGTTTTGTTGAGTTAAGGGGCCTGAAAGAGCacgagagaatacatacaggggAAGAGAAAACATACCACTGTTCTCATTGTGGGAAGGGTTTCGGGCGATCAGGGCATCTAAAAGTGCATGAAAGAACACACACTGGCGAGAAGCCGTATCAGTGCTCTCAGTGTGAAAAGAAATTTTTCTCATCAGGGGACCGGAAATCACATGAGAGAACACACTTAGTAGAGAGGCAGAGGGCTTTCCAATgctctcagtgtgggaagagaTTCATCCAGTCATCTCATCTGAAAGATCACATGACAATACACACGGGAGAAAAACCATTCCAATGTTCTCAGTGTGGAAAAGGTTTTACCAGGTTAAGGAGACTGAAAACACATGAgatgacacacacaggagataaatAATCCTTTCAAATCCTCTTAGTGTGAAAAAGCTTTTACCCGGTTAGGACACCTTAAAATGCATGAGATGACATGCAGGGAagaagcctttccactgctcccagTCTGGAAAGAGTTTTACCTAGTCAAGATACTTGAAAAAAACATGCGCTAACACACTTTTCAGAGAATCCTTGAATAAATCCACACTgcaggaaaatatatttttatatgatTAAGTTAACTCATTGATTCTACTTTGTTGTATACCCCTCAGGTCTAAGTTTGCGAAAAAGAAACCAGGCCCAGTCCTTGCCGTTCTGCCACTCTAGGCGAGAAAATAAATTGccgccatcctcctctctctgcaaAACTAGAATAGTGTGCCGTGTccacccagtggtggaaaaagtacccaattgtcatacttcgGTAAGAGTAAAGATACTGtacctttaatagaaaatgactcaaaagTGCACGTCACCCAGTAAATTACTACTCGAGtaattggttttaaatatacttaagattcaaaagtaaatgtaattgcaaaaatatacttagtgcattcagaaagtattcagaccccttgactttccacattttgttacttta

Function

NR:

description
oocyte zinc finger protein XlCOF6-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036949744.1 True 2966 mRNA 0.44 4 32447495 32478576

Neighbor

gene id symbol gene type direction distance location
LOC110493168 NA coding upstream 5703 32439735 ~ 32441792 (+)
LOC110495166 NA coding upstream 22233 32423006 ~ 32425262 (+)
ero1b LOC106586106 coding upstream 70312 32352949 ~ 32378308 (+)
LOC110493741 LOC106564836 coding upstream 107236 32330091 ~ 32340259 (+)
LOC110493739 LOC106564840 coding upstream 134856 32281680 ~ 32312639 (+)
LOC110493748 LOC106564832 coding downstream 20470 32499046 ~ 32560510 (+)
rbm34 LOC106564828 coding downstream 175854 32562173 ~ 32662021 (+)
strn LOC106564825 coding downstream 367644 32846220 ~ 32933183 (+)
LOC110493756 LOC106564824 coding downstream 496262 32974838 ~ 32984904 (+)
iip2 iip2 coding downstream 508100 32986676 ~ 32988014 (+)
G1439706 NA non-coding upstream 2707 32444338 ~ 32444788 (+)
G1439440 NA non-coding upstream 95266 32351977 ~ 32352229 (+)
G1439438 NA non-coding upstream 98180 32348953 ~ 32349315 (+)
G1439402 ru2b non-coding upstream 166037 32274966 ~ 32281458 (+)
G1439367 NA non-coding upstream 236694 32210573 ~ 32210801 (+)
G1439717 NA non-coding downstream 2011 32480587 ~ 32482128 (+)
G1439716 NA non-coding downstream 9061 32487637 ~ 32491941 (+)
G1439718 NA non-coding downstream 175110 32653686 ~ 32654194 (+)
G1439787 NA non-coding downstream 189932 32668508 ~ 32668742 (+)
LOC110493164 LOC106564854 other upstream 471274 31973440 ~ 31976221 (+)
G1438941 LOC106564856 other upstream 539997 31906522 ~ 31907498 (+)
G1438880 NA other upstream 742331 31702494 ~ 31705164 (+)
G1437911 LOC106564885 other upstream 1513911 30927247 ~ 30933584 (+)
G1439962 LOC106564826 other downstream 234284 32712860 ~ 32766707 (+)
G1440066 NA other downstream 318522 32797098 ~ 32797432 (+)
G1440162 NA other downstream 473224 32951800 ~ 32956057 (+)
G1440890 LOC106564813 other downstream 1045623 33524199 ~ 33524534 (+)

Expression


Co-expression Network