XLOC_033260


Basic Information

Item Value
gene id XLOC_033260
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 57787720 ~ 57790025 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00065260
cacacacacatatccagcttaaaccagcttgaccagcctggtttaagctggacaaagctggttttggctgagctCACAacctggctaagctggtcaagctggttttagctggtcatctcccaggctgtccagctaaaaccaggctcgAAATGGCTGGAAGGTGCGAAAaaggcgtctgaggtgcgaaaaagcatCAGCCTcccgcggattcgcgaaaacaaaaactgcagccgtacgtacccgccaggacgtattccgcggtctccagaaacgtccgcgggactacgtttccacaatgagcccgggttgtttaAAAGagatttgaccaaaaaaaaagtcAGCTTTGTCATTATTTCTCAATCCTCCTGTTGTTATTTTCTCCTCTTTAAGTAGTAAACACACATATGTTTTAGTACAGCATGAGGGCAAGTATCTGATAGCACATTTTTTCTTTCCAGATATACTATTCCTTTAAAATTCCATGAAATAATCAtctaaaaaatcatttattttgggaaaaatccCATGATGGATGGCTGTTTTGAAGGTTTGCTTGCAGCAGAGGTCTTCTTCTGacccttttcttttttctctttcgaACCCCCCACAACCCCCGTTGACTACGGGCCTGTGTATGATTATCTTAAAACAATAGAGGTGTTTtgaataatgtgtttttttaatatgaaGGTATGGAATCAAACGTGTTATTAAAGAAATACTTGTTGCAAATCGgcaaatgtattatatttgtgtGCATACTTCTATGTATTATAATTTAAAAGCACAGTATATGTAAATGCATTACATGGAAGTATGCATGCATCAAtttcacatattgtgcatgtagATTGCTGGAACAGCACGTTTAGTCTGGTAGATGCAATTCTGAACACAGCCAGATTAATGACTGTATTGCTTGTAATGCTCATTACGTCCATTAGAGGTCAGTATAACTTTATTATTTAACACATTAAGTCATGTCCGATACTTCTGAAATCAAAATATTAGAGTTGTATGTGTAGTTTTGGCTTGTAAAAGGAAGCAAAGAGTGAGATATAACCACATTCCCCACACAAAACCATTACTCCACAAAAATACAACGGTAAAACATGATGAATATGATGATAAAATATGGTCTGGATCCATCAcagtgcttgttttttttttgtatttgtaaaggTTTGGTTGATTCTCTCTCTTCACAGATGCATAGATTCAGGGGTTTTCTGGAAGACGACGAGTCGTAAGGTTATATACTTAAAGTTAAATCATCATTTCTCATCTGAAATATCTCAAAAACGCTCTCAGCTGCCCGACATTGAAGCCCTTTTACAATCAGAGCATCTGCGTTTTTCACAGTCTCCCCACAAACTGGAGTAAATCAACAAAATCAGGAAACACCGGCTCTGTCCCAAACCCTAGTAAGCACTCTACATAGGGAGCATGTTAAGGCATCATAAGATGGTAGTCTATATAAAATTGCAGATATATTAGTTGAAATATTAAATCACTGAAAGGCATCACATGCACTGCTTTTATTTATAACCACTGTTGGCTGTTGTAGTTACCACACCGAAGGCAGCAGGAGCGTCAAAGTTCACTACATTGATCCCATATTTAAAGGGGCCATCGCAGCATTTTAGCAATCACTTGCATTCCTGCATACAGTAATATTACTCATTACTGATGTAAGGGATCACTTTTCATTTTTATAGCATGTAATTGTTGTTACTTATAATGTCCTTGCCTTGAATGATGTGAATAAATTAAACAGTTCTGGATAAACCAATTGAGTTATGCAGACTAATTAATAGTTAATATTGTTTCAGCTTTGTTTATGATAAAAATCATACATGATTGAGAACCAATGAATTGAGTCAGTAGGAAATGTCGAGTCATTGATTTTGAAACATATAATATTTACTATtcttaatgtacattttttgatAAAGCTAAAAGGTCATGATTGGCTCAGAGAATGTTTTGAAATTTATATGGGTTTATTTATGGGTATATTTTAGATAGCGTTGACTCAAGTAATTAAATGACTTGTTGAGTAATTAAGTTACTTTTAAGACatagtaattaaaaatgtaattt

Function

GO:

id name namespace
GO:0007268 chemical synaptic transmission biological_process
GO:0098916 anterograde trans-synaptic signaling biological_process
GO:0099536 synaptic signaling biological_process
GO:0099537 trans-synaptic signaling biological_process
GO:0030672 synaptic vesicle membrane cellular_component
GO:0043005 neuron projection cellular_component
GO:0044456 obsolete synapse part cellular_component
GO:0045202 synapse cellular_component
GO:0099501 exocytic vesicle membrane cellular_component
GO:0033267 obsolete axon part cellular_component
GO:0097458 obsolete neuron part cellular_component
GO:0098793 presynapse cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00065260 True 2103 lncRNA 0.37 2 57787720 57790025

Neighbor

gene id symbol gene type direction distance location
XLOC_033259 CABZ01087330.2 coding downstream 18062 57769542 ~ 57769658 (-)
XLOC_033258 cbfa2t2 coding downstream 64858 57634360 ~ 57722862 (-)
XLOC_033257 CU693502.1 coding downstream 156556 57630414 ~ 57631164 (-)
XLOC_033256 NA coding downstream 165851 57620905 ~ 57621869 (-)
XLOC_033255 itcha coding downstream 248579 57491794 ~ 57539141 (-)
XLOC_033261 tox2 coding upstream 110212 57900237 ~ 58149165 (-)
XLOC_033262 NA coding upstream 291610 58081635 ~ 58082635 (-)
XLOC_033263 NA coding upstream 880680 58670705 ~ 58672580 (-)
XLOC_033264 NA coding upstream 941273 58731298 ~ 58733557 (-)
XLOC_033265 soat2 coding upstream 947143 58737168 ~ 58764672 (-)
XLOC_033251 CABZ01034962.1 non-coding downstream 524075 57263510 ~ 57263645 (-)
XLOC_033250 NA non-coding downstream 664810 57108325 ~ 57122910 (-)
XLOC_033269 NA non-coding upstream 1257882 59047907 ~ 59050828 (-)
XLOC_033270 NA non-coding upstream 1260961 59050986 ~ 59053205 (-)

Expression


Co-expression Network