LOC110493759 (LOC106564822)


Basic Information

Item Value
gene id LOC110493759
gene name LOC106564822
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 33035998 ~ 33037993 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021568219.2
AGAGAGGAGGGGCACGCTCAGTCTTGTCCTATCATAGACAGTACGTAACTGCAAACAAGATTTTACGTAGAAATCACGCACATTGCGTAAATACTAACAACAAACATGGCGGACGATCACACGGACGCAGACCAATCTATGGAGGTGCACACTCCAACAGCTGAAAACCCCCATTCTGAATATGGACTGACGGACAACATCCAGAGAATAGTGGAAAACGAGAAAGCCAACACAGAGAAGGTCTCCAAACAGAAGGTGGATCTGCAGTCGCTCCCCACGAGGGCATATTTGGATCAGACAGTGGTGCCCATCCTTCTTCAAGGCTTATCTGTGCTGGCCAAGGAAAGACCTGCAAATCCTATTGAATTCTTAGCAGCCTTCCTTCTCAAGAACAAATCACAGTTTGAAGATCGAAATTAAGCTCCAGACGGATGGAAATGTGCACTTTGAGCCCATCTATTTAAAATCAAGGAAATGGTTGTTTCTGTCATGTTTgcagttttttttaaaccagaataaagatGGTGTTGCAGGGAAATATGGTACTCTTTTAGGACAAATGTCAGA
>XM_036949749.1
CGTATACCCCAACAATTTGTTTAATCCAGTCTGTTCTGTCGGTAACAGTCCTTGGTTCACGGTGGAAGGTCGTTGCTAACATAACGTTAACTAGCCAACGAGCTAAAGTAACGTTAGTTTACCCGCCACTAGAATTCATATATTCATTCGATATTACTGTAGCTAGCCTGCCTGTAGGGTACCTTCTTTGGCTTGTAGGAATGGATGGTACTCCTATGTCGTTATCTACCTGAATTTAATCTGGAATCACACGGACGCAGACCAATCTATGGAGGTGCACACTCCAACAGCTGAAAACCCCCATTCTGAATATGGACTGACGGACAACATCCAGAGAATAGTGGAAAACGAGAAAGCCAACACAGAGAAGGTCTCCAAACAGAAGGTGGATCTGCAGTCGCTCCCCACGAGGGCATATTTGGATCAGACAGTGGTGCCCATCCTTCTTCAAGGCTTATCTGTGCTGGCCAAGGAAAGACCTGCAAATCCTATTGAATTCTTAGCAGCCTTCCTTCTCAAGAACAAATCACAGTTTGAAGATCGAAATTAAGCTCCAGACGGATGGAAATGTGCACTTTGAGCCCATCTATTTAAAATCAAGGAAATGGTTGTTTCTGTCATGTTTgcagttttttttaaaccagaataaagatGGTGTTGCAGGGAAATATGGTACTCTTTTAGGACAAATGTCAGAGGTAAACTAATATATACAAAAGACACCAACTACGTTGCACCTCAAGTTCCCTTGCATCATGGTCCCCTCCAGGGCAAAATATTCCAGATTCAGTCCATTTACCAAAATGCTTACAAGAGAACATTTGCGTTTTAATTAACAATGTCATGTTTTCATATTGCCAAATGACACACGTATCATTCTAGTGTCATGTTTTATTCTACCACTAGTTGAGCTACAGAGTTGGTGATGAACCCCTTTGATAAAAGGGTCAATCTGATGCCCCAAACTCCATTCTATTAA

Function

NR:

description
unnamed protein product

GO: NA

KEGG:

id description
K14965 DPY30; protein dpy-30

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021568219.2 False 567 mRNA 0.44 5 33035998 33037711
XM_036949749.1 True 979 mRNA 0.42 5 33036194 33037993

Neighbor

gene id symbol gene type direction distance location
iip2 iip2 coding upstream 47984 32986676 ~ 32988014 (+)
LOC110493756 LOC106564824 coding upstream 51094 32974838 ~ 32984904 (+)
strn LOC106564825 coding upstream 102815 32846220 ~ 32933183 (+)
rbm34 LOC106564828 coding upstream 374236 32562173 ~ 32662021 (+)
LOC110493748 LOC106564832 coding upstream 475488 32499046 ~ 32560510 (+)
LOC110493760 LOC106564819 coding downstream 31763 33069756 ~ 33076669 (+)
LOC110493762 LOC106564986 coding downstream 205983 33243976 ~ 33245965 (+)
LOC118940095 NA coding downstream 545382 33583355 ~ 33584984 (+)
LOC118940096 NA coding downstream 556283 33593813 ~ 33596307 (+)
LOC118940097 NA coding downstream 729242 33767235 ~ 33768659 (+)
G1440191 LOC106564821 non-coding upstream 19135 33011002 ~ 33016863 (+)
G1440168 NA non-coding upstream 67822 32967976 ~ 32968176 (+)
G1440155 NA non-coding upstream 96238 32939343 ~ 32939760 (+)
G1440138 NA non-coding upstream 97236 32900576 ~ 32938762 (+)
G1440105 NA non-coding upstream 198486 32836650 ~ 32837512 (+)
G1440223 NA non-coding downstream 31233 33069226 ~ 33069456 (+)
G1440234 NA non-coding downstream 51147 33089140 ~ 33090626 (+)
G1440278 NA non-coding downstream 124880 33162873 ~ 33163131 (+)
G1440531 NA non-coding downstream 134223 33172216 ~ 33172560 (+)
G1440670 NA non-coding downstream 329261 33367254 ~ 33369171 (+)
G1440162 NA other upstream 79941 32951800 ~ 32956057 (+)
G1440066 NA other upstream 238566 32797098 ~ 32797432 (+)
G1439962 LOC106564826 other upstream 269291 32712860 ~ 32766707 (+)
ero1b LOC106586106 other upstream 657690 32352949 ~ 32378308 (+)
G1440890 LOC106564813 other downstream 486206 33524199 ~ 33524534 (+)
G1441315 NA other downstream 938200 33976193 ~ 33976475 (+)
LOC110493778 LOC106564798 other downstream 1252048 34290017 ~ 34317682 (+)
LOC110493802 LOC106564779 other downstream 2130905 35120694 ~ 35184540 (+)
G1443221 NA other downstream 2635971 35673964 ~ 35744642 (+)

Expression


Co-expression Network