LOC110493760 (LOC106564819)


Basic Information

Item Value
gene id LOC110493760
gene name LOC106564819
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 33069756 ~ 33076669 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021568220.2
TAAGTGTGCCTCTCCCATTCACACACGTCTCACACCAGCATACACAGATGGAGGCTACTCGATCTTGACAGAGTGGAGACCGTGGAAGCGTTGCTGAACACGAGGACCTGAAGGAAGAGAAAGataagaaaggagagaaggagagggggataatAATGGAGTGCAAGGAGAATGTGATCCACTTCCTCAGCTGGGGGTTCATCGTTGGTGCAGTGGCGTATCTCCTTCAGCAGACCAGGACCCAGACCCCGTATGGACGCTACGTGACCTCGGATGGGACCCCAGGGAGGACCTGTCCTGCCAAGCTGGCCTGGTTCCTCCAGGAACTGCCTTCTTTCCTGGTGCCCATGCTCCTTCTGCTCTCCACTGACACACAGCCCAGCCTGGGCAAAGACCTTCTTCTCTGGACCTTCTGTCTGCACTACTTCCAAAGAACGTTCATCTACTCCTTGCTGACCAAAGGCCGCCCTTCCCCTCTCTACATTGTCTTCTCTGCGTTAGTCTTCTGTTCCGTCAACGGTTTTCTCCAAGGCCACTACATGCTCCACTGTGCCACGTACGATGACACGTGGCAGACCGACATTCGTCTAGGCACCGGTTTGCTGATGTTTTTCCTGGGAATGGCCATCAACATTCACAGCGACCACATTCTTCTAAATTTGAGAAAACCCGGAGAGGTTGTTTACAAGATTCCAAAAGGGGGAATGTTTGAGTATGTCTCCGGAGCAAACTTCTTTGGAGAGATTCTGGAGTGGTGCGGGTATGCCCTAGCAACGTGGTCCCTAACGACGTTCTCCTTTGCCCTTTTCACCATGTGCTCGATTGGACCGCGGGCCTACCACCACCACAGGTACTACCAAGAGAAGTTTGAAGACTACCCTCGGTCGAGGAAAGCTGTGATACCTTTCATATTATAAGAAGAACAGCAAACCAGAGAAGCCTTAATAAATGGACTGACCTAGCTAAAATCATTAGTCATAGCCATGATATTGGCATTTACTGAACTCTGAAATCaactgtatttatatagcccttcttacatcagcggatatctcaaagtgctgtacagaaacccagcctaaaaccccaaacagcaagcaatgcaggtgtagacgcacggtgtctaggaaaaactccatagaaaggccagaacctaggaagaaacctagagaggaaccaggctatgaggggtggtcagtcctcttctggctgtgccgggtggagattataacagaacatggccaagatgttcatatatgaccagcatggtcaaataataataatcacagtagttgtcgagggtgcaacaagtcagcacctcaggagtaaatgtctgttggcttttcatagccgatcattaagagtatctctaccgctcctgctgtctctagagttgaaaacaggtcagggttccaaagCCGCTTGTCCTATATTGCTCTTTTCTGTGGAGCCCATTTGACCAAGCTTTAGCTTTCAGTAACTAGACATATTGAACCTATCATCTCATTGTACTCAGAGCTATCATATTCCACCCTTGCAGCAACACATCTGTAATGCCATACTCCAAAATACCTGGGAGGAATGAATTATGTGGCAGCATTTATCATGGTCAAAGCTCATTGAAGGATAAATAATTCAAGGTGAAGAGAAAGGGGGGTGGTGGGTAGGTCTTGAAAGAATAACATATTTTATGTTGAAAGGGATGACTGACAGCCTTTTCTTCTCTGTGCAAAAAGGTATCTCGTGGACAGATGAGCTACTTCACTTTTGGAAAGGCTCATTAAATCTCTGCTTATTTACCTTGGGTCTGAAAAAAAACCttggtctgtttgtttttcttatGCAGTTTATCAAATAATATGCGATTAATAACTGCTGCATATGCGATTACACTTTTTAATTTCATGCTTGCTTGGTTAGATATATCCAAAGGCAATGTTATCCTTCATTAGGTGGGACAAAGGCTCAGCTTACTTGGAAAGCATGTAACTTGAATGTCTGGCTGCGCAGTGACATTCACCAATCAAATTCCAGAGAGATGGCAAACATTGCCACCCTCGGAAACTAGTCGAGCTAGTGCATCACTGAGGTTCTTGACAGACAAGCTTAAAAGTACGTGTTATGACATGACAGTAGTTGTAATCCTCTTATTCTAACCCTAGAGGGCAGTATAAGCTTTTTCATGTGGGTATCATGTTTTAGAGAGCGCAACAACATGATAGTCCACTAAAAGCAGACATTGGCCACATTAAAATTTCAATCCAAGGTGGCTTTTTAATTTCCTTCATTGGCACTGATCTGGAGAAAGAGCAGTGCTGATGACGGAAAATATTAAACTCTTTCCACCTTACTGAGCCAGCCGAGCTGTGTTGCGCTGGCCTGGTTACGCATTCACCATCGTTTTCTGGAACCATGCTGGAAAGGAGCATGTGAAAATAAAATCTCTGAACCAGCACAGTACAGTTTGGGTCAGCACGATAAAGTGAAAACAGCTTTAAAGATGTTGAAGATGGAACATGTTAAGAATGGAGGTCCCAATattgacttgcttagttaaaggttaaataaaaaaatattgcaCTCAATTGCGATGGTACTTAAGCCCACTCCTTGGTCTAATTTAATATAATCTCAAATTTTGTTTCAATGGAAAGAATCAAATGTTTGCTTTCATGACtgacattttaaatgtaaccGATTAT

Function

NR:

description
3-oxo-5-alpha-steroid 4-dehydrogenase 2-like

GO:

id name namespace
GO:0008202 steroid metabolic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003865 3-oxo-5-alpha-steroid 4-dehydrogenase activity molecular_function

KEGG:

id description
K12344 SRD5A2; 3-oxo-5-alpha-steroid 4-dehydrogenase 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021568220.2 True 2702 mRNA 0.44 5 33069756 33076669

Neighbor

gene id symbol gene type direction distance location
LOC110493759 LOC106564822 coding upstream 31763 33035998 ~ 33037993 (+)
iip2 iip2 coding upstream 81742 32986676 ~ 32988014 (+)
LOC110493756 LOC106564824 coding upstream 84852 32974838 ~ 32984904 (+)
strn LOC106564825 coding upstream 136573 32846220 ~ 32933183 (+)
rbm34 LOC106564828 coding upstream 407994 32562173 ~ 32662021 (+)
LOC110493762 LOC106564986 coding downstream 167307 33243976 ~ 33245965 (+)
LOC118940095 NA coding downstream 506706 33583355 ~ 33584984 (+)
LOC118940096 NA coding downstream 517607 33593813 ~ 33596307 (+)
LOC118940097 NA coding downstream 690566 33767235 ~ 33768659 (+)
LOC110493170 LOC108247247 coding downstream 746981 33823650 ~ 33825084 (+)
G1440223 NA non-coding upstream 300 33069226 ~ 33069456 (+)
G1440200 NA non-coding upstream 12315 33024755 ~ 33057441 (+)
G1440191 LOC106564821 non-coding upstream 52893 33011002 ~ 33016863 (+)
G1440168 NA non-coding upstream 101580 32967976 ~ 32968176 (+)
G1440155 NA non-coding upstream 129996 32939343 ~ 32939760 (+)
G1440234 NA non-coding downstream 12471 33089140 ~ 33090626 (+)
G1440278 NA non-coding downstream 86204 33162873 ~ 33163131 (+)
G1440531 NA non-coding downstream 95547 33172216 ~ 33172560 (+)
G1440670 NA non-coding downstream 290585 33367254 ~ 33369171 (+)
G1440785 NA non-coding downstream 308608 33385277 ~ 33386802 (+)
G1440162 NA other upstream 113699 32951800 ~ 32956057 (+)
G1440066 NA other upstream 272324 32797098 ~ 32797432 (+)
G1439962 LOC106564826 other upstream 303049 32712860 ~ 32766707 (+)
ero1b LOC106586106 other upstream 691448 32352949 ~ 32378308 (+)
G1440890 LOC106564813 other downstream 447530 33524199 ~ 33524534 (+)
G1441315 NA other downstream 899524 33976193 ~ 33976475 (+)
LOC110493778 LOC106564798 other downstream 1213372 34290017 ~ 34317682 (+)
LOC110493802 LOC106564779 other downstream 2092229 35120694 ~ 35184540 (+)
G1443221 NA other downstream 2597295 35673964 ~ 35744642 (+)

Expression


Co-expression Network