LOC110493762 (LOC106564986)


Basic Information

Item Value
gene id LOC110493762
gene name LOC106564986
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 33243976 ~ 33245965 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021568225.2
ATTGCCTAGCATGTCTTACCATGAGAATGGGCCTTTGGTCTTACAGAATGGGTCTTATAGAATGGGCCTTTGGTCTTAAGATATGGAATAGCATGAATACAAGAATGAGGGATTCTGTGTACACCACTCTAAAATGAAGGTGAATGTGATCTCTAAAGCAAACCGGATATTGTTTGAAGAGATTCTATTGGGTGGGATCTCCATGAATGCCACTCAAGGAAGCAGAGTTGAGCTGAAAAATCGAAAGTGAAACTATCTGAGAAACACTAGAAAAGCAGAGCCATGCCAGCGAAGTTGGTGCAGTTCAGCGGTTGGGAGGCTGTGGTTGAGAAGCAGATTGTCCTGAAACCTGGTCAGGCACCACGGGGCAGACAAGGCTACACCATGTACCATGGCACCCACCGTGACAGCGCTCGAGCCATCATCACAGGGGGTTTCCGGCCCTCTGCGGGGGGCACGTTGGGCCCGGGGGTCTATTGCAGCCGGGACATAGCCAAGGCGCGGGGCTACCCTAGTCGGTGCCCCCCTGGGGAACACGTGGTACTGCAGCTGAAAGTCCGGGTGGGCCGCGTGAAGAAGATGGATGGACAGAATTTAGCAATGTGGCACTCGTGGCAACAGAGCGGCTATGATACTGCCTGGCTGCCCTCCACCGTCATTGGGCATGAGGAGGACTGCGTTAAAGACCCCAAGCGGGTGGCGGTGAAAGGCATTGCACACTGTGCCGACACGGCCACGAAGCAAGCCCTCGAGAAGCTCATCAGTCAGCAGAGACAGGGGGGGGAGTCAAGTGGACAGGGAAACGAGCAGGGGGTTGTGGGCAGGTGTAAGGTGTGCAAGATGCAGACACCGATTGGCCACtctctggaggtgtgttgggggtGTGACGCCACTGTATGCCCTTTTATGGACAAACATGTCTGCAAAAGGAGCAGTTGAAAGCGACAGATTTGACATACTGGATACTATATGATTATGACATTATTGGTTAATTCGACAATAAAAAAAAGTTTGTGTGGAAA
>XM_021568224.2
TTGCCTAGCATGTCTTACCATGAGAATGGGCCTTTGGTCTTACAGAATGGGTCTTATAGAATGGGCCTTTGGTCTTAAGATATGGAATAGCATGAATACAAGAATGAGGGATTCTGTGTACACCACTCTAAAATGAAGGTGAATGTGATCTCTAAAGCAAACCGGATATTGTTTGAAGAGATTCTATTGGGTGGGATCTCCATGAATGCCACTCAAGGAAGCAGAGTTGAGCTGAAAAATCGAAAGTGAAACTATCTGAGAAACACTAGAAAAGAGCCATGCCAGCGAAGTTGGTGCAGTTCAGCGGTTGGGAGGCTGTGGTTGAGAAGCAGATTGTCCTGAAACCTGGTCAGGCACCACGGGGCAGACAAGGCTACACCATGTACCATGGCACCCACCGTGACAGCGCTCGAGCCATCATCACAGGGGGTTTCCGGCCCTCTGCGGGGGGCACGTTGGGCCCGGGGGTCTATTGCAGCCGGGACATAGCCAAGGCGCGGGGCTACCCTAGTCGGTGCCCCCCTGGGGAACACGTGGTACTGCAGCTGAAAGTCCGGGTGGGCCGCGTGAAGAAGATGGATGGACAGAATTTAGCAATGTGGCACTCGTGGCAACAGAGCGGCTATGATACTGCCTGGCTGCCCTCCACCGTCATTGGGCATGAGGAGGACTGCGTTAAAGACCCCAAGCGGGTGGCGGTGAAAGGCATTGCACACTGTGCCGACACGGCCACGAAGCAAGCCCTCGAGAAGCTCATCAGTCAGCAGAGACAGGGGGGGGAGTCAAGTGGACAGGGAAACGAGCAGGGGGTTGTGGGCAGGTGTAAGGTGTGCAAGATGCAGACACCGATTGGCCACtctctggaggtgtgttgggggtGTGACGCCACTGTATGCCCTTTTATGGACAAACATGTCTGCAAAAGGAGCAGTTGAAAGCGACAGATTTGACATACTGGATACTATATGATTATGACATTATTGGTTAATTCGACAATAAAAAAAAGTTTGTGTGGAAA
>XM_036949750.1
AGAGAAAGttataaacactgtaataatatTTTAGAAACTTATCCACAGCCAGTGAGTGGCACAACATTGGGATCTATAAGGCATAGATTTGAGATTTTCTATGGTGAGCCATGCCAGCGAAGTTGGTGCAGTTCAGCGGTTGGGAGGCTGTGGTTGAGAAGCAGATTGTCCTGAAACCTGGTCAGGCACCACGGGGCAGACAAGGCTACACCATGTACCATGGCACCCACCGTGACAGCGCTCGAGCCATCATCACAGGGGGTTTCCGGCCCTCTGCGGGGGGCACGTTGGGCCCGGGGGTCTATTGCAGCCGGGACATAGCCAAGGCGCGGGGCTACCCTAGTCGGTGCCCCCCTGGGGAACACGTGGTACTGCAGCTGAAAGTCCGGGTGGGCCGCGTGAAGAAGATGGATGGACAGAATTTAGCAATGTGGCACTCGTGGCAACAGAGCGGCTATGATACTGCCTGGCTGCCCTCCACCGTCATTGGGCATGAGGAGGACTGCGTTAAAGACCCCAAGCGGGTGGCGGTGAAAGGCATTGCACACTGTGCCGACACGGCCACGAAGCAAGCCCTCGAGAAGCTCATCAGTCAGCAGAGACAGGGGGGGGAGTCAAGTGGACAGGGAAACGAGCAGGGGGTTGTGGGCAGGTGTAAGGTGTGCAAGATGCAGACACCGATTGGCCACtctctggaggtgtgttgggggtGTGACGCCACTGTATGCCCTTTTATGGACAAACATGTCTGCAAAAGGAGCAGTTGAAAGCGACAGATTTGACATACTGGATACTATATGATTATGACATTATTGGTTAATTCGACAATAAAAAAAAGTTTGTGTGGAAA
>XM_036949751.1
AGAGAAAGttataaacactgtaataatatTTTAGAAACTTATCCACAGCCAGTGAGTGGCACAACATTGGGATCTATAAGGCATAGATTTGAGATTTTCTATGAGCCATGCCAGCGAAGTTGGTGCAGTTCAGCGGTTGGGAGGCTGTGGTTGAGAAGCAGATTGTCCTGAAACCTGGTCAGGCACCACGGGGCAGACAAGGCTACACCATGTACCATGGCACCCACCGTGACAGCGCTCGAGCCATCATCACAGGGGGTTTCCGGCCCTCTGCGGGGGGCACGTTGGGCCCGGGGGTCTATTGCAGCCGGGACATAGCCAAGGCGCGGGGCTACCCTAGTCGGTGCCCCCCTGGGGAACACGTGGTACTGCAGCTGAAAGTCCGGGTGGGCCGCGTGAAGAAGATGGATGGACAGAATTTAGCAATGTGGCACTCGTGGCAACAGAGCGGCTATGATACTGCCTGGCTGCCCTCCACCGTCATTGGGCATGAGGAGGACTGCGTTAAAGACCCCAAGCGGGTGGCGGTGAAAGGCATTGCACACTGTGCCGACACGGCCACGAAGCAAGCCCTCGAGAAGCTCATCAGTCAGCAGAGACAGGGGGGGGAGTCAAGTGGACAGGGAAACGAGCAGGGGGTTGTGGGCAGGTGTAAGGTGTGCAAGATGCAGACACCGATTGGCCACtctctggaggtgtgttgggggtGTGACGCCACTGTATGCCCTTTTATGGACAAACATGTCTGCAAAAGGAGCAGTTGAAAGCGACAGATTTGACATACTGGATACTATATGATTATGACATTATTGGTTAATTCGACAATAAAAAAAAGTTTGTGTGGAAA

Function

NR:

description
uncharacterized protein LOC110493762

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021568225.2 False 1022 mRNA 0.52 2 33243976 33245965
XM_021568224.2 False 1018 mRNA 0.52 2 33243977 33245965
XM_036949750.1 False 850 mRNA 0.54 2 33244265 33245965
XM_036949751.1 True 847 mRNA 0.53 2 33244265 33245965

Neighbor

gene id symbol gene type direction distance location
LOC110493760 LOC106564819 coding upstream 167307 33069756 ~ 33076669 (+)
LOC110493759 LOC106564822 coding upstream 205983 33035998 ~ 33037993 (+)
iip2 iip2 coding upstream 255962 32986676 ~ 32988014 (+)
LOC110493756 LOC106564824 coding upstream 259072 32974838 ~ 32984904 (+)
strn LOC106564825 coding upstream 310793 32846220 ~ 32933183 (+)
LOC118940095 NA coding downstream 337410 33583355 ~ 33584984 (+)
LOC118940096 NA coding downstream 348311 33593813 ~ 33596307 (+)
LOC118940097 NA coding downstream 521270 33767235 ~ 33768659 (+)
LOC110493170 LOC108247247 coding downstream 577685 33823650 ~ 33825084 (+)
LOC110493766 LOC106564809 coding downstream 596373 33842338 ~ 33926454 (+)
G1440531 NA non-coding upstream 71416 33172216 ~ 33172560 (+)
G1440278 NA non-coding upstream 80845 33162873 ~ 33163131 (+)
G1440234 NA non-coding upstream 153350 33089140 ~ 33090626 (+)
G1440223 NA non-coding upstream 174520 33069226 ~ 33069456 (+)
G1440200 NA non-coding upstream 186535 33024755 ~ 33057441 (+)
G1440670 NA non-coding downstream 121289 33367254 ~ 33369171 (+)
G1440785 NA non-coding downstream 139312 33385277 ~ 33386802 (+)
G1440787 NA non-coding downstream 141311 33387276 ~ 33387602 (+)
G1440789 NA non-coding downstream 143039 33389004 ~ 33389237 (+)
G1440887 NA non-coding downstream 270459 33516424 ~ 33517380 (+)
G1440162 NA other upstream 287919 32951800 ~ 32956057 (+)
G1440066 NA other upstream 446544 32797098 ~ 32797432 (+)
G1439962 LOC106564826 other upstream 477269 32712860 ~ 32766707 (+)
rbm34 LOC106564828 other upstream 633635 32562173 ~ 32662021 (+)
ero1b LOC106586106 other upstream 865668 32352949 ~ 32378308 (+)
G1440890 LOC106564813 other downstream 278234 33524199 ~ 33524534 (+)
G1441315 NA other downstream 730228 33976193 ~ 33976475 (+)
LOC110493778 LOC106564798 other downstream 1044076 34290017 ~ 34317682 (+)
LOC110493802 LOC106564779 other downstream 1922933 35120694 ~ 35184540 (+)
G1443221 NA other downstream 2427999 35673964 ~ 35744642 (+)

Expression


Co-expression Network