LOC118940095


Basic Information

Item Value
gene id LOC118940095
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 33583355 ~ 33584984 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005036697.1
GAAGACCAGAAGACATCATCCAGATAAACAGCCATCAATCAGACAGCATCGTCCAACTGTAAGAGTAAAGGATGAAGATCCAgagtatgttactgctgttcgcTCTAGTGGGTGTCCTGTTAGCAAGCTCCCTCAATGAAGATAACTCTGAGGATGCTCTCCTGCAGGAGGATGATGTAACAAATGGAAAGGCTGCCTTTTTGGCAAAGTTGGCTACTCTGAAGACCCTCCCCTCTGAAGATGAAGCAGCATTTTGGGGCGAGCTTTGGAACGTAGCCAAGGACCTTGTTGGGTGAGAAGCGACCAGCATGGGATGCCAAGGATCCTTTTCAGTCTCCATATGGAATCAGCTATCACCTCTGAAGTCATCACTAACATTACCTCAGTGAATCATTCcaacatccatccatcaatcaatGATTGTCAAAAAACAACATCAGTAATACAGTTAATTGGTACTTTGGTACTGAGAAGAACTCATCAACATTCTGAAGAATATATGTTTTATCCATGAAcatgtactttatgtcctgacACAGGATAGTTGGTTGGTCAAGTTAGTGGATAAATAATTGCATGGTTGTATGGTTGACTTGACATATTGTGATCCTCCAATAAACTA
>TU1649484
AGAGACGCCACACTACTACTGAAGACCAGAAGACATCATCCAGATAAACAGCCATCAATCAGACAGCATCGTCCAACTGTAAGAGTAAAGGATGAAGATCCAgagtatgttactgctgttcgcTCTAGTGGGTGTCCTGTTAGCAAGCTCCCTCAATGAAGATAACTCTGAGGATGCTCTCCTGCAGGAGGATGATGTAACAAATGGAAAGGCTGCCTTTTTGGCAAAGTTGGCTACTCTGAAGACCCTCCCCTCTGAAGATGAAGCAGCATTTTGGGGCGAGCTTTGGAACGTAGCCAAGGACCTTGTTGGGTGAGAAGCGACCAGCATGGGATGCCAAGGATCCTTTTCAGTCTCCATATGGAATCAGCTATCACCTCTGAAGTCATCACTAACATTACCTCAGTGAATCATTCcaacatccatccatcaatcaatGATTGTCAAAAAACAACATCAGTAATACAGTTAATTGGTACTTTGGTACTGAGAAGAACTCATCAACATTCTGAAGAATATATGTTTTATCCATGAAcatgtactttatgtcctgacACAGGATAGTTGGTTGGTCAAGTTAGTGGATAAATAATTGCATGGTTGTATGGTTGACTTGACATATTGTGATCCTCCAATAAACTATCAAGCATAAGACATGTTTAGTCGTTTTTTATTAATCTTACATGTTTAGCAGTGTTTCAATTACATCATACATGTTTCATAATATTGTTTTATTTCGTGTTTCTATTCAGTGTGAACAATGTGAACTTGACCATAATACAGATGCAGTGCATGCAGAGCAAATTACATCAGATTACACTgagcagtaatagtagtacacatgtccacacacacacactagacgtACCGTCGTGAGAGTGAGCTTGATAACAGCAGTAAGATATCCTGGATCTTCTAATAAACTACATCCTGTATTCAAAATGGG
>TU1649485
AGAGACGCCACACTACTACTGAAGACCAGAAGACATCATCCAGATAAACAGCCATCAATCAGACAGCATCGTCCAACTGTAAGAGTAAAGGATGAAGATCCAgagtatgttactgctgttcgcTCTAGTGGGTGTCCTGTTAGCAAGCTCCCTCAATGAAGATAACTCTGAGGATGCTCTCCTGCAGGAGGATGATGTAACAAATGGAAAGGCTGCCTTTTTGGCAAAGTTGGCTACTCTGAAGACCCTCCCCTCTGAAGATGAAGCAGCATTTTGGGGCGAGCTTTGGAACGTAGCCAAGGACCTTGTTGGGTGAGAAGCGACCAGCATGGGATGCCAAGGATCCTTTTCAGTCTCCATATGGAATCAGCTATCACCTCTGAAGTCATCACTAACATTACCTCAGTGAATCATTCcaacatccatccatcaatcaatGATTGTCAAAAAACAACATCAGTAATACAGTTAATTGGTACTTTGGTACTGAGAAGAACTCATCAACATTCTGAAGAATATATGTTTTATCCATGAAcatgtactttatgtcctgacACAGGATAGTTGGTTGGTCAAGTTAGTGGATAAATAATTGCATGGTTGTATGGTTGACTTGACATATTGTGATCCTCCAATATTTTTTATTAATCTTACATGTTTAGCAGTGTTTCAATTACATCATACATGTTTCATAATATTGTTTTATTTCGTGTTTCTATTCAGTGTGAACAATGTGAACTTGACCATAATACAGATGCAGTGCATGCAGAGCAAATTACATCAGATTACACTgagcagtaatagtagtacacatgtccacacacacacactagacgtACCGTCGTGAGAGTGAGCTTGATAACAGCAGTAAGATATCCTGGATCTTCTAATAAACTACATCCTGTATTCAAAATGGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005036697.1 False 622 mRNA 0.42 4 33583375 33584680
TU1649484 False 946 lncRNA 0.40 4 33583355 33584984
TU1649485 True 917 lncRNA 0.40 5 33583355 33584984

Neighbor

gene id symbol gene type direction distance location
LOC110493762 LOC106564986 coding upstream 337410 33243976 ~ 33245965 (+)
LOC110493760 LOC106564819 coding upstream 506706 33069756 ~ 33076669 (+)
LOC110493759 LOC106564822 coding upstream 545382 33035998 ~ 33037993 (+)
iip2 iip2 coding upstream 595361 32986676 ~ 32988014 (+)
LOC110493756 LOC106564824 coding upstream 598471 32974838 ~ 32984904 (+)
LOC118940096 NA coding downstream 9596 33593813 ~ 33596307 (+)
LOC118940097 NA coding downstream 182555 33767235 ~ 33768659 (+)
LOC110493170 LOC108247247 coding downstream 238970 33823650 ~ 33825084 (+)
LOC110493766 LOC106564809 coding downstream 257658 33842338 ~ 33926454 (+)
LOC110493767 LOC106564808 coding downstream 352854 33937534 ~ 33970100 (+)
G1440904 NA non-coding upstream 43657 33539434 ~ 33539718 (+)
G1440901 LOC106564813 non-coding upstream 47179 33535888 ~ 33536196 (+)
G1440892 NA non-coding upstream 57515 33525649 ~ 33525860 (+)
G1440891 NA non-coding upstream 57824 33525157 ~ 33525551 (+)
G1440887 NA non-coding upstream 65995 33516424 ~ 33517380 (+)
G1440966 NA non-coding downstream 45241 33629921 ~ 33640039 (+)
G1440967 NA non-coding downstream 48910 33633590 ~ 33641456 (+)
G1441004 NA non-coding downstream 139397 33724077 ~ 33724950 (+)
G1441203 NA non-coding downstream 187082 33771762 ~ 33772286 (+)
G1440890 LOC106564813 other upstream 58841 33524199 ~ 33524534 (+)
G1440162 NA other upstream 627318 32951800 ~ 32956057 (+)
G1440066 NA other upstream 785943 32797098 ~ 32797432 (+)
G1439962 LOC106564826 other upstream 816668 32712860 ~ 32766707 (+)
rbm34 LOC106564828 other upstream 973034 32562173 ~ 32662021 (+)
G1441315 NA other downstream 391513 33976193 ~ 33976475 (+)
LOC110493778 LOC106564798 other downstream 705361 34290017 ~ 34317682 (+)
LOC110493802 LOC106564779 other downstream 1584218 35120694 ~ 35184540 (+)
G1443221 NA other downstream 2089284 35673964 ~ 35744642 (+)
G1443251 NA other downstream 2162192 35746872 ~ 35751790 (+)

Expression


Co-expression Network