Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC118940096 |
| gene name | NA |
| gene type | misc |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048581.1 |
| NCBI id | CM023235.2 |
| chromosome length | 95212422 |
| location | 33593813 ~ 33596307 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XR_005036698.1 | False | 474 | mRNA | 0.39 | 2 | 33594276 | 33596302 |
| TU1649486 | True | 648 | lncRNA | 0.40 | 4 | 33593813 | 33596307 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC118940095 | NA | coding | upstream | 9596 | 33583355 ~ 33584984 (+) |
| LOC110493762 | LOC106564986 | coding | upstream | 348311 | 33243976 ~ 33245965 (+) |
| LOC110493760 | LOC106564819 | coding | upstream | 517607 | 33069756 ~ 33076669 (+) |
| LOC110493759 | LOC106564822 | coding | upstream | 556283 | 33035998 ~ 33037993 (+) |
| iip2 | iip2 | coding | upstream | 606262 | 32986676 ~ 32988014 (+) |
| LOC118940097 | NA | coding | downstream | 170933 | 33767235 ~ 33768659 (+) |
| LOC110493170 | LOC108247247 | coding | downstream | 227348 | 33823650 ~ 33825084 (+) |
| LOC110493766 | LOC106564809 | coding | downstream | 246036 | 33842338 ~ 33926454 (+) |
| LOC110493767 | LOC106564808 | coding | downstream | 341232 | 33937534 ~ 33970100 (+) |
| LOC110493768 | hebp1 | coding | downstream | 387358 | 33983660 ~ 33995716 (+) |
| G1440904 | NA | non-coding | upstream | 54558 | 33539434 ~ 33539718 (+) |
| G1440901 | LOC106564813 | non-coding | upstream | 58080 | 33535888 ~ 33536196 (+) |
| G1440892 | NA | non-coding | upstream | 68416 | 33525649 ~ 33525860 (+) |
| G1440891 | NA | non-coding | upstream | 68725 | 33525157 ~ 33525551 (+) |
| G1440966 | NA | non-coding | downstream | 33619 | 33629921 ~ 33640039 (+) |
| G1440967 | NA | non-coding | downstream | 37288 | 33633590 ~ 33641456 (+) |
| G1441004 | NA | non-coding | downstream | 127775 | 33724077 ~ 33724950 (+) |
| G1441203 | NA | non-coding | downstream | 175460 | 33771762 ~ 33772286 (+) |
| G1441204 | NA | non-coding | downstream | 176977 | 33773279 ~ 33773494 (+) |
| G1440890 | LOC106564813 | other | upstream | 69742 | 33524199 ~ 33524534 (+) |
| G1440162 | NA | other | upstream | 638219 | 32951800 ~ 32956057 (+) |
| G1440066 | NA | other | upstream | 796844 | 32797098 ~ 32797432 (+) |
| G1439962 | LOC106564826 | other | upstream | 827569 | 32712860 ~ 32766707 (+) |
| rbm34 | LOC106564828 | other | upstream | 983935 | 32562173 ~ 32662021 (+) |
| G1441315 | NA | other | downstream | 379891 | 33976193 ~ 33976475 (+) |
| LOC110493778 | LOC106564798 | other | downstream | 693739 | 34290017 ~ 34317682 (+) |
| LOC110493802 | LOC106564779 | other | downstream | 1572596 | 35120694 ~ 35184540 (+) |
| G1443221 | NA | other | downstream | 2077662 | 35673964 ~ 35744642 (+) |
| G1443251 | NA | other | downstream | 2150570 | 35746872 ~ 35751790 (+) |
