catl (catl)


Basic Information

Item Value
gene id catl
gene name catl
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 33798978 ~ 33811605 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>NM_001165112.1
GAGGCAGGAGCAGTCAAACCCAGgaTGCAGATGAAACTCCTACTAATGGCATTGTGTGCAGTGGTGTCCTCTTTCAAACAACCACTGAGCACTGAGCTGGATGCTATCTGGGAGGAGTGGAAAACCCAACACAGCAAACAGTATTCCAAGGTGGATGAGGGCTTCAGAAGGATGATCTGGGAGACAAACCAACGCCTCATCCGTCAACACAACCTGGAGGCAGAAATAGGAAAGCACACCTTCACCCTGGGAATGAACCAGTTTGGAGACATGATGAATAAAGAGTACAACGCCTTGTTGACTGCTAATGATGCTGAAGAGGTGAAAAGCCTGGATGGGATCCCCCTGTCTAAGTGGAACTGCAGTCTCTCAGCAGCTCCTGAGACATGGGACTGGCGTCAATATGGATATGTGACTCCAGTGAAGAACCAGGGGTCTTGTGGATCTTGCTATGCATTTGCTGCAGTCGGAGCCCTGGAGGGCCAGTTGTTCAAGCAGACAGGCACACTGTTGCCTCTGAGTGAGCAGAACCTGGTAGACTGCAGTGGAGACTATCACAATAATGGCTGTGACGGTGGCTTGGCCATGAGGTGTTTTAGTTACGTCTCAGATCATGGGATTATGTCGGAGAGGAATTATCCTTACACTGCAGAGGTGGGCCCTTGTGAATACCAGAATGCAACAAAGGAAGCCTGGTGCAAGGGCTTCAACAGAGTTCCTTCTCTGGATGAAAAAGTGTTTTGAGACACTTTGTATGAGGTTGGCCCTATCGCTGTGTCTGTGAACGCCACACATCCCTCCTTCAAGTTCTACAAAGATGGAGTCCTCTACGAGCCAGACTGTTCAACAAGAACAAACCATGCTGTACTGGCTGTCGGGTATGGTAGTTCTTACCTGGACTACTGGATTGTGAAAAACAGCTGGGGTACTGGTTGGGGAAGAGACGGGTACATTCTCATGGCCAGAGGATACAACCAGTGTGGTATTGCCAGACGCCCAGTCTACCCTATTATGTGATTTGTGCATGTTGACACACTTGGAATCCTAGCtagagatacagtgcattcagaaaaaattcagaccccttgactttttcaacgttttgttacgttacagacttattctaaaatgtattacatttttgtgttctcaccaatctacacacaatacccggaAATTACAAAGTGTAAACaggtttgaaaatgtattatcaataaaaaacagaagtat

Function

NR:

description
Cathepsin L precursor

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0008234 cysteine-type peptidase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
NM_001165112.1 True 1230 mRNA 0.47 8 33798978 33811605

Neighbor

gene id symbol gene type direction distance location
LOC110493765 LOC106564810 coding downstream 16801 33778695 ~ 33782177 (-)
LOC110495170 NA coding downstream 43207 33754737 ~ 33756106 (-)
LOC118940399 NA coding downstream 136508 33660413 ~ 33662470 (-)
LOC118940400 NA coding downstream 146770 33650286 ~ 33652208 (-)
LOC118940402 NA coding downstream 170947 33627500 ~ 33628031 (-)
LOC110493171 NA coding upstream 13660 33825265 ~ 33833964 (-)
LOC110493773 NA coding upstream 311412 34123017 ~ 34128257 (-)
LOC110493771 LOC106564804 coding upstream 321442 34133047 ~ 34144263 (-)
LOC110493774 LOC106564802 coding upstream 334470 34146075 ~ 34166122 (-)
pex6 LOC106564799 coding upstream 442587 34254192 ~ 34270050 (-)
G1441361 NA non-coding downstream 20839 33777836 ~ 33778139 (-)
G1441355 NA non-coding downstream 26692 33771928 ~ 33772286 (-)
G1441353 NA non-coding downstream 28066 33770659 ~ 33770912 (-)
G1441400 NA non-coding upstream 23703 33835308 ~ 33837637 (-)
G1441438 NA non-coding upstream 70903 33882508 ~ 33931334 (-)
G1441477 NA non-coding upstream 139725 33951330 ~ 33952248 (-)
G1441488 NA non-coding upstream 148980 33960585 ~ 33963221 (-)
G1441499 NA non-coding upstream 170176 33981781 ~ 33981988 (-)
LOC110493763 LOC106564812 other downstream 382625 33413110 ~ 33515866 (-)
G1440786 NA other downstream 412450 33385937 ~ 33386528 (-)
G1440781 NA other downstream 416259 33381901 ~ 33382719 (-)
G1440711 NA other downstream 546599 33238621 ~ 33252379 (-)
G1440683 LOC106606817 other downstream 604703 33189835 ~ 33194275 (-)
G1442139 NA other upstream 548497 34360102 ~ 34361306 (-)
G1442336 LOC106564790 other upstream 908822 34720427 ~ 34720792 (-)
G1442443 NA other upstream 1092477 34904082 ~ 34904616 (-)
LOC110493800 LOC106564782 other upstream 1248594 35023723 ~ 35061975 (-)
G1442932 rbbp9 other upstream 1417149 35228754 ~ 35232154 (-)

Expression

catl(catl) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 3.
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catl(catl) Expression in each Bioproject

Bar chart with 20 bars.
catl(catl) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 100.
End of interactive chart.

Co-expression Network