LOC110493170 (LOC108247247)


Basic Information

Item Value
gene id LOC110493170
gene name LOC108247247
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 33823650 ~ 33825084 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110493170
atggcagcacaaaatgtcataaggatgaccccatggcccacaagacatgcagttgCCCATGCCCAGTCCATCGCCTCAACGTTCTACATGTTCATCACACCAGCCATCGAAAAAATCATCCTGGAGATGACAAATTTGGAGGGGTTCCGTAAAtatggagacaactggaaaaGGATGGATGAGATTGACCTGCGAGCCTGcatagggctgctaatcttagcGGGTGTCTGTAGGTCCCGAGGCGAAgctacatgtagtctctgggaTGCAGAGAGTGGATTTTCCGTGCCACGATGCCATTGAAAgtctttcacactttctcaagAATGCTACGATTTGATAACCATGAGTCAAGACCTGCAAGAAGTGTGAAAGACAAACTGGCggccataagagaggtctgggagaagtgggtggagcgtctgccatacctctacaaccctgggcctgaagtaacagtgaatgagcaactggttccattcatttgtcgctgtcctttccggcagtatatgcccagcaagccagcaaagtatggcatcaagatatgggtggcctgtgacgcacaatccagctatgcttggaagatgcaagtctacacTGGGAAGCTGAGCAATGGAGGCCCAGAGAAGAACCATGGGATGCGggttgtgcttgatgtgacagatggactgagggggcatgtcacgtgtgacaatttttcacctcttatgaactcagccagcagctcctgaagaggaagatcaccattgttggcacagttagaaagaacaagcctgagctctcCCCTGGACTCCTTGcaacaagagggagagaggccttctcatcaaagtttgccttcacccccaccaccactctagtttcttatcttccaaagaggaacaagaatgtggtcctcctgagcacactgcacaaaacagctgagatcagtgatcgtgaAGACAGGAaaccagccatcatcctggactacaagcacaacaaaggaggcgtgtacaacctggacaaggtgattggaacttacagctgcagaaGGATGACTGCccactggcccctggtcatcttccattacatcattgatgtgtcctcatacaattcATGATAAGGAACAAGGTCAACCCTACTTGGATGCCTGAGAAGCGGAACAAAAAGTGTTCCTGgggcagctgggaaaggcacttgtaaccccatacattcaaagaagggagcgcctCCCCCACACAGCAGCCTatgcagcgcttgtgaaagctgttcaggggggctgaatcttgtcctgatccacctgaggctgcagctggggcaggcaag

Function

NR:

description
PREDICTED: piggyBac transposable element-derived protein 4-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110493170 True 1302 mRNA 0.50 2 33823650 33825084

Neighbor

gene id symbol gene type direction distance location
LOC118940097 NA coding upstream 54991 33767235 ~ 33768659 (+)
LOC118940096 NA coding upstream 227348 33593813 ~ 33596307 (+)
LOC118940095 NA coding upstream 238970 33583355 ~ 33584984 (+)
LOC110493762 LOC106564986 coding upstream 577685 33243976 ~ 33245965 (+)
LOC110493760 LOC106564819 coding upstream 746981 33069756 ~ 33076669 (+)
LOC110493766 LOC106564809 coding downstream 17254 33842338 ~ 33926454 (+)
LOC110493767 LOC106564808 coding downstream 112450 33937534 ~ 33970100 (+)
LOC110493768 hebp1 coding downstream 158576 33983660 ~ 33995716 (+)
LOC110493769 LOC106564807 coding downstream 171084 33996168 ~ 34034123 (+)
LOC110493770 LOC106585018 coding downstream 215177 34040261 ~ 34121223 (+)
G1441225 NA non-coding upstream 23254 33798975 ~ 33800396 (+)
G1441224 NA non-coding upstream 24982 33798433 ~ 33798668 (+)
G1441218 NA non-coding upstream 32759 33790663 ~ 33790891 (+)
G1441216 NA non-coding upstream 34070 33789341 ~ 33789580 (+)
G1441204 NA non-coding upstream 50156 33773279 ~ 33773494 (+)
G1441188 NA non-coding downstream 57428 33882512 ~ 33931224 (+)
G1441281 NA non-coding downstream 57781 33882865 ~ 33883147 (+)
G1441286 NA non-coding downstream 65659 33890743 ~ 33891492 (+)
G1441536 NA non-coding downstream 212856 34037940 ~ 34038151 (+)
G1441541 NA non-coding downstream 298084 34123168 ~ 34123495 (+)
G1440890 LOC106564813 other upstream 299116 33524199 ~ 33524534 (+)
G1440162 NA other upstream 867593 32951800 ~ 32956057 (+)
G1440066 NA other upstream 1026218 32797098 ~ 32797432 (+)
G1439962 LOC106564826 other upstream 1056943 32712860 ~ 32766707 (+)
rbm34 LOC106564828 other upstream 1213309 32562173 ~ 32662021 (+)
G1441315 NA other downstream 151109 33976193 ~ 33976475 (+)
LOC110493778 LOC106564798 other downstream 464957 34290017 ~ 34317682 (+)
LOC110493802 LOC106564779 other downstream 1343814 35120694 ~ 35184540 (+)
G1443221 NA other downstream 1848880 35673964 ~ 35744642 (+)
G1443251 NA other downstream 1921788 35746872 ~ 35751790 (+)

Expression


Co-expression Network