LOC110493772 (LOC106564803)


Basic Information

Item Value
gene id LOC110493772
gene name LOC106564803
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 34129926 ~ 34132623 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021568245.2
aaagaaaaaaaaactcctCCTAAAACTCTGTGAAATTTGTTTAGGGCTGCTTGtaatcttcactctctctccatctgactGAAAAAGCAACACAGGAATTATTGGTAGAAACAAAAGGAGTATTAAGAGAGAACATCCAAAACTGTGACTTCCAAGGGCAACTGTTAAATGTGAAAGTTAAACAAAGTTGTACGTTTCACTACCTAGTGCAGTGTATCTAGTGTTCTACAATGGCAGCATCTGTCTCTGAATTGTTGCTGACCATTCTGGAGAAACTGAACaacaaagagatggagagatttaACTGGGAGCTGTGCAATAGCAATCTGAAAGATTTTCCTAACATTTCAAAGGCTCATCTGGAGAATGTCACAAGGCATGCCACTGTGGATAGGATGGTGGAGACCTACTGCGATGAGGGAGCTGTGAACGTCACAATCATGATCCTAAGCAACATGAACCGTAACAAACTTGCTATGTCTTTAAAGAGAGATCTTCCAGAAGAGGAATCAACACAGAAAAAAAGAAGGGAAGAGGGGAAATCGGTGAGTGGACGACCTGAGGACGACCTGAGATCTGACTTAACACGTCTGGAAGAAAAGCTGGAGAAATGTATAAATGCCCGAGAGAGCTACAATAGCATGACTCAGCACACCAAGGACCAGGAGGTGGACACAACGAGGAGGATCAGGGAAGAGTTTGTGAAGCTCCACCAGTtcctgagagaggaagaggatgccagactggctgctctgagggaggaggagaaagaaaagGGAATGTTAATTGAGAAAGgcatggacagtattgatgagCAGATCTCCTCTCTCACAAATGCCATTAAGGCTGTGAAAGAGGACCTGAACAAAGGCAGTGAAAACTTCCTTGTGAATTACAAGCAGAGAAGAGCCCAACTTGATCTTCCGGATCCACAGCTCGTCTCCGGAGCGCTGATCGACATCGCCAAACACCTGGGAAACCTGCAGTTCCAAGTCTGGGAGCAGATGCAGGCGATAGTCAAACACTCGCCCATAATTTTGGACCCCAACACGGCTCCCTCTACTATGACTTTGTCTGATGACCTCACCAGCGTGCGACACACAGCCGTAGAGAAGCAGCATTTTCCGGACAACCCAGAGCGGTTCACGCGGTGGGCAAAGGTCATTGGCTCCACAGGCTTTATGAAGGGTTCAGAGCATAgctgggaggtggaggtgggcgACCAACCTGAGTGGAATCTAGGCGTGGCTGCAGAGTCCGTCGATCGGAAGGGAGAAGATCTTCTTGCGTCACCAGAATACGGAATCTGGGCTATACTGAAAAGGGGGCGCAAGTATACAAATGGAGCTGGTAAAACGCTCACTCTGAAGAGGATACCCCAGAGGATCAGAGTTCAGCTGAACTACGACAGGGGGGAAGTGGCTTTCTATGACCCCAaagacaatacacacatctacactCATAAACATAGGTTTACTGAGACGGTCTACCCATACATCTCTGTTTGGAAGATGAAAGACGCCATCAACCGTGATATACATATCTGCCCATCAGAGGTGTCTGTGACAGTAAAATCAAATCAATGAGGTATGTGCGAGTGTTCGTGGGTGTATCGATCCAATCTTCTCTGACAGGCTTATACGACTTTTCTGTAAACCATCCCAAACTATTATTGTTCTGTATAAGATGTCTGCCCTGTTACATTTCAAATATTGTTGTAGTTTAATAATTGTGCACgtttcatgtccaaatcatcctaaAGTGTCTGAAATTCCTAATGTAGATCAATTAAGTTATACTTTAAGATGCTAATATACGGGATATATAATTGGTGTTGGGTGACAAATGCTAAAAAGTTAGCATTTGGAGACAGTGGCCAGCGAAACTAAACCAAATCAGGATTGCTGTCTGACGTTGTCTGTAGACTGCTTAAAAGATAAGGGAATCTATCATTAGTTTCAACTCTCCCTTTAAAGGGGAAGTCCACagctgaaacaataacaaagcagtcTCCCTGGAGAAATTTAACCACTCAATAGACAGAGCTACGGATGCAAGGACAGATCATCCAAGATAACAAAACATTGGCAGACTTCTATATTCGTGATATATATACAtgttgattcttgaagaatataacgtaTAAATGCCATGAGCTTAGATAAACTGTCGTACCCAATCAGAACCCATAtaaaagcttatattttgggttctgatggggtacgacagttcaACTAAAAGTTCatggcatttataagttatattcttcaagaatcaacagGTAAATATCCCTTACAATATAATTCCAAATTTGATGTAGCAACTGCAACTTTTAAGTTTATTAGGTATATGTTGATAGTTCAACACTTTGTTTTAGTAAACCACAAGATCTGTGTGCCATGTCTACTTGTACCTTTTGCTAAACATTTACTTTGACTTCCAGCACCTGTTGAAAGTTACTGGATGTGCCTGTCATCGTTTTTCCCCCCCCAAATGTTCCAATCTGCTGTGCTGAACTTTCTGTATGAGATGTAAGGGGTTTacatacatgtttatatatttgCCTTCTTTAAAGTGGAACCACGTGTTTCTGCAGTCAGACAGAATGACATGGCTGCAAAAAGAAAGTGTCATTTTGACAAGACTACGGTCGAAATGTGTCGTCTTTTTGAATAAACTAGCACCATGGATTCATAAA

Function

NR:

description
tripartite motif-containing protein 35-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021568245.2 True 2698 mRNA 0.42 1 34129926 34132623

Neighbor

gene id symbol gene type direction distance location
LOC110493770 LOC106585018 coding upstream 8703 34040261 ~ 34121223 (+)
LOC110493769 LOC106564807 coding upstream 95803 33996168 ~ 34034123 (+)
LOC110493768 hebp1 coding upstream 134210 33983660 ~ 33995716 (+)
LOC110493767 LOC106564808 coding upstream 159826 33937534 ~ 33970100 (+)
LOC110493766 LOC106564809 coding upstream 203472 33842338 ~ 33926454 (+)
LOC110493775 LOC106564801 coding downstream 40453 34173076 ~ 34233684 (+)
LOC110493777 NA coding downstream 109290 34241913 ~ 34254653 (+)
LOC110493778 LOC106564798 coding downstream 157394 34290017 ~ 34317682 (+)
LOC110493783 LOC106564979 coding downstream 298264 34430887 ~ 34443032 (+)
LOC110493785 mal coding downstream 327467 34460090 ~ 34468487 (+)
G1441580 NA non-coding upstream 1700 34127721 ~ 34128226 (+)
G1441576 NA non-coding upstream 3293 34126320 ~ 34126633 (+)
G1441593 NA non-coding upstream 5779 34123923 ~ 34124147 (+)
G1441541 NA non-coding upstream 6431 34123168 ~ 34123495 (+)
G1441536 NA non-coding upstream 91775 34037940 ~ 34038151 (+)
G1441581 NA non-coding downstream 3881 34136504 ~ 34136795 (+)
G1441595 NA non-coding downstream 5503 34138126 ~ 34138580 (+)
G1441582 LOC106585043 non-coding downstream 7337 34139960 ~ 34141267 (+)
G1441578 NA non-coding downstream 11014 34143637 ~ 34214105 (+)
G1441641 NA non-coding downstream 84285 34216908 ~ 34217213 (+)
G1441315 NA other upstream 153451 33976193 ~ 33976475 (+)
G1440890 LOC106564813 other upstream 605392 33524199 ~ 33524534 (+)
G1440162 NA other upstream 1173869 32951800 ~ 32956057 (+)
G1440066 NA other upstream 1332494 32797098 ~ 32797432 (+)
G1439962 LOC106564826 other upstream 1363219 32712860 ~ 32766707 (+)
LOC110493802 LOC106564779 other downstream 1036275 35120694 ~ 35184540 (+)
G1443221 NA other downstream 1541341 35673964 ~ 35744642 (+)
G1443251 NA other downstream 1614249 35746872 ~ 35751790 (+)
LOC118940407 NA other downstream 2106321 36234292 ~ 36242642 (+)

Expression


Co-expression Network