LOC110493775 (LOC106564801)


Basic Information

Item Value
gene id LOC110493775
gene name LOC106564801
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 34173076 ~ 34233684 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021568248.2
GTTATTTTCCACTgcgcaaaaaaaaaatctaatttccaGTCAGTTTTCAATTTTTGGGTTCCAGGTGAAAGCCTAACCTGTGCTTCATAGCCCAAACGCAGGATTGTGGGGGTGAGGGTACCCGGTTGGGGTATCCATGTGCAAAGATGTCAGACGAGAGACAGGTGATGCGCTCTCTGCATGCATCCCGTCTTCAACAGGGGGAGCACAGCCACGGAACGTGCCGTCGAACAGCATGAGGTGAGGGATTCTTCCGCTCATCATTTCTAAGCAGAACAGGGACCGTGAAAGCAGCAGAGCGGAGATTTGAGCAGCTGTATCGTCCTACGGACACTTCAGACATCCTTTCACTCTAAAAGCGTTCTCTTCTTACCGACGTTGAATGACAAGACGGAATGGCAGGTGGACGTCGAGGACTTGTGGCCCCACAAAACACTTTTCTCGAGAACATCGTCCGACGATCCAATGATACCAACTTTGTTCTGGGCAATGCCCAGATTGTGGACTGGCCCATTGTGTACAGCAACGACGGCTTCTGCAAGCTCTCCGGTTACCACCGTGCTGAGGTCATGCAGAAAAGTAGCACCTGCAGTTTCATGTATGGGGAGCTCACAGACAAGGAGACGGGTGGGAAAGTGCAACAGACCTTTGAGAATTATGAGATGAATTCGTTCGAAATCCTCATGTATAAGAAGAATCGGATGCCGGTGTGGTTCTTTGTAAAGATTGCTCCTATCAGGAATGAGCAGGACAAGGTGGTGTTGTTTCTGTGCACCTTCAGTGACATCACTGCGTTCAAACAGCCCATTGAGGATGACTCTGTGAAAGGATGGGGTAAATTCGCTCGACTCACACGGGCTCTGACCAGCAGCCGGGGAGTGTTGCAGCAGCTGGCGCCCACCGTCCACAAGGGCGAGAACGTCCACAAGCACTCTCGTCTGGCTGAGGTCCTCCAGCTGGGCTCAGACATCCTCCCGCAGTACAAGCAGGAGACGCCTAAAACTCCTCCCCACATCATCCTCCACTACTGCGCCTTCAAGACCACCTGGGACTGGGTCATCCTCATCCTGACCTTCTACACAGCCATCATGGTGCCCTACAACGTCTCATTCAAGACCAAGCAGAACAACGTCACCTGGCTGGTGGTGGACAGCATCGTGGATGTCATCTTTCTGGTGGACATCGTGCTCAACTTCCATACCACGTTTGTGGGGCCAGCCGGAGAGGTCATCTCGGACCCCAAACTGATCCGGATGAACTACGTCAAGACATGGTTCGTCATCGACCTGCTCTCCTGCCTGCCGTACGACGTCATCAATGCCTTCGAGAATGTTGACGAGGGCATCAGCAGTCTCTTCAGCTCCCTCAAAGTGGTCCGTCTGCTCCGCTTGGGCCGGGTGGCCCGTAAACTGGACCACTACATTGAGTACGGGGCCGCTGTCCTGGTCCTGCTGGTGTGCGTCTTTGGCCTGGCTGCCCACTGGTTGGCCTGCATCTGGTACAGCATCGGCGACTACGAGGTCATCGACGAGAACACCAACAGTGTGAGGATGGACAGCTGGCTCTACATATTGAGCGAATCGGTGGGGACACCGTACCGCTTCAACGCCAGTGGCTCTGGGAGGTGGGAGGGCGGGCCTAGCAAGGACTCAGTCTACATCACTTCCCTCTACTTCACCATGACCAGCCTGACCAGCATCGGCTTCGGCAACATCGCCCCCACCACCGACGGAGAAAAACTCTTCGCTGTGGCAATGATGATGATCGGATCACTCCTGTATGCCACCATCTTCGGTAACGTGACTACCATCTTCCAGCAGATGTACGCCAACACCAACCGCTACCACGAGATGCTCAACAGCGTCCGCGACTTCCTTAAGCTCTACCAGGTGCCCAAGGGCCTCAGCGAACGCGTCATGGACTACATTGTCTCCACGTGGTCCATGTCTAGAGGCATCGATACAGACAAGGTGTTGCAGATCTGCCCCAAGGACATGCGGGCGGACATTTGCGTCCATCTTAACAGAAAGGTGTTCAAGGAGCACCCAGCCTTCCGACTCGCGAGCGACGGGTGCCTACGGGCCCTGGCCATGGAGTTCCAGACCATCCACAGTGCCCCCGGAGACCTCATCTACCACGCGGGCGAAAGCGTAGACAGCCTCTGCTTTGTGGTGTCCGGGTCCTTGGAGGTCATCCAGGACGATGAGGTTGTGGCCATATTAGGAAAGGGAGACGTGTTTGGGGACATCTTCTGGAAGGAGGTGACCCTAGCCCAGGCTTGCGCCAACGTCCGGGCCTTGACTTACTGCGACCTCCACGTCATCAAGCGTGAAGCTCTGCAGAAAGTTCTGGAGTTCTACACGGCCTTCTCTAACCACTTCTCCCGCAACCTGCTGCTCACCTATAACCTCAGAAAGAGGATAGTGTTCCGGAAGATCAGTGATGTGAAACGTGAGGAAGAGGAGATGCTCAAGAGGAATAATGAGGCCCCTCTGAACCTTCCTCCGGACCACCCCGTCCGTCGCCTCTTCCAGCGCTTCCGGCAGCAGAGGGAGGCGCGACTGGCAGCAGAGCGAGCTAGTCAGGGGGAGCCACCAGACGTGGAGAAGGGCACCATCCACCTGGAGCAAACCAAGATCCACGAGGTACTCGCCTCCACCAGCATCATCATGGTGACCGAGAGCCCTGCCACTCCCACAGCTTCGTCCACATTGTCATCTTTGTCCTCCAGGCCCTCTGGCCGAGTCATGCTTCATGCCCCTGCCATCCAAAATGGCAACCTCGTAGGCTGCAAGTCCGCAGAGCCAGCGCCAAAGACCAAAAAGGGCTGGGGTCGTTTCAAGGAATCCGTTGTGAAAGCAGAGTCATGGAGCAGCGTTTCTAAGGCCGAGTCCATGGAGACCTTGCCGGACAGGACTAAGTCCCATAACAAGATGTCTCTCAAGAAGACAGACTCTTGTGACAGCGGTATTACCAAGAGCGACCTGCGCTTAGATAACGTGGGTGATGCCCGCACTCCGCAGGACCGGAGCCCTGTGCAGTCAGAAGGGAAGCTGGTTGTCTGTcctatacccatacagaccatgCACGCCTCTTTCCTGGAGCTGAAGCAGGAACTTAGGGGAGACATTGGGTCTCTTAATGGCCGCATGGCGGTGGTGGAGGCACAGCTGGCCGAGATGCTTCAACTGCTAAAATCGAAAAAGACCTCTAGTTCGAGAAAGGCCTCTCGCTCATCCAGTTTCTTTGAGATGTCACGACCGGCATCCCCCGATTCCGATAAGGACGACAGCTTCTCACAATCTTGACACTGCATGTTTTAGCAGGCTATGCAATATTACCCCCAACagtacaatttttttttgttgtagccccggacaagcacacctgattcaacttgttaattatcaagccctcaatgagttgaatcaggtgagtttgtcCGGTGCTACaccaaaaatgtgtgctgttggcgGTACTCAAACTGGAGTTGTGAAACATTGGTCTATGGGACATGAAGTGAATACATCCTAGAGTTCATCCAGGAGCTGGCTGAGGTGTCGCAAAAATCTGAGAGGTTTTGTGAAGACTTGGGCAATAAGATGTTCCCAAATTAGTTCAGATGAGTAATAAGGGATTATTTGAcccttttattattattattattagatatAGGGGTAATCTGGATAAAAAGATGCACATCTGGATAATCTCTGCACCTTGAGGCACATACTGTGTGATATTCCATGGATCTACTTTTGTGGGGGTTCAAACTGTAAACAgcataaataataatttatttaatttatttattaatttatttcttTTCAATTGGACTCGTTTTAGTTTTAACTTGGTCACACATTTGTCATGGTAAAACTAAACCCTTAAGGAGGTTTTCATCAAATCTGTGCACTCAATTGAAATTAGCAATAATATTTTATTGCATTTATATAGTTTTTCACCAGGTCTCTAAGCACTTCATTTGCAGGGGGTGATGTGGTCATGATAACATGAACACTGTGGAGCAACAGCGAAGATGCACATATCTAAAATGGCATTGTCCATGAATGGATTTGCTTTCGTTATAGTTTGTCAATGCATTACTGGGATAAAGTACAATCTTGTAAATAATGATAGATTGTTATGTTGGATATCCATCACTGCCCAATGGCAGCaggtacatgtacagtacatgagCACAGTTGCACAATATGAAAGTGTACCATGTGTGGTATAATTTCAGTGGGAAAGCTGGATATTTAGAATTTTTGTGTGTGTTAAATGTCCTCGCATGATAACATGTTTGGTCATTATAATACGGTATGTTGCAAAATTTAAGTTACACCAAAAATACATGTTTGAGCCATTTCTAAAATAGCTGTTTTCACCCCATCCAACCGTTATGTTATTTGGTTTTGTCCAGTCAACCAAACAAATGTTGCTATGCTAGCTCAAAGCACGCATTGGGAACAACTGTAAACCTGTTTAGTAATGCAAATTTATAGAAAAATACCTTGAAAGCAGTGTGGCTTGTTATTTACGCCATTGCTCTCTCTTTGTATTAAAATGAGGGGAAAATCATGATTGTGAACTTTCAATGTATGGTGGAAACCATGGCACCTTTTCAACCAACGTCCATCCTGAATTGTCATGGGAAGAAGTCAATCTCGACTATGAAACCTTTGTGCATTTCTGGTCATCACTGTTGATATAATATGCAAAGTGTTGACATTTATATTGTGTCTCTAGCATTTGTGTTGCAATGTTGAAGGACTAAAATGAGATACTTGCACAGACAGGTCCAGAGTTATTGGTACCCTTGATAAATatgaggaaaaataaataatgcaTACTGAGATATattgtatgccaaacaaaattTGGGAAAATGATATatgttatactaatacaattgctcagagaaagagattttgtttgaCAAGTAATAATTGTTTTCTCTAaaaaaagataggggtcaaaattattggcacccctgtttttaATACTCTGGCACCCTCCCCTTTGTGAGGATAATGGCACGGAgccttttctgaatttttttatgagattggagaacacattgggagggatcgtagaccattcctccatacggaatctttccagatccttgatatcctttgtctgcgcttatggactgccgGCTTCAATTCAAACTACAGGTTTTTATTGGGGTTCAAGTCCATAgacagatggccattgcaaaatatTGATTTTGTGGTCACTTAACCatttcctgtgtgtattttgATATGCGCTTGGGGttgttgtcttgctggaagagcaacttgcggccaagtttcatCCTCttggcaaccaggtttttgggaTAAAATACCCTAgtacttggtaaagttcatgatgccgttgacatTAAcaggggccccaggaccagtggaagtaAAATAGCTCAATAACATcaaaagatccaccaccataaaGTAGGTATGAGGTTATTTTCTGCATATGCTTTCTTCTTTTGATGCCAAACCCACCACACTCAtgtgcatggccaaagagctctactTATGTCATCTGACCATGTTcaggttccaatccaagtgccaatgcaaACTCCCAAGCGGTTCCCTTCTGGGTTGCTCTCAATTATGTttttctggcaacccttccaaaaaGCCTATTGGCATGGTGTCTAATTATAGATATAAAGTCTTACTTGGTGACCCGAAGGTGTTCTGTAATTCTCCAAATGTGGCTCTTAGATGTTTCTttacatcccaaaccatcttccTTACTGTGTGGGGGACAAGATACACATACGTCCAATATCAGGCAGGTTTACCACTGTTCCAGAAGTTTTAAACCTCCTAATTGTTGGCATAATAGTGGTAAATGGGAATTTTTTTGTACCCGTTGCCTGATTTATGAAGGTCCACAACCATCTCTTTTCATTGTGAGTTCTTCGCCTTTCCCCATGGTGATGGATGATACATTTACATGTGTGTTACCTCATTTCTTTACCCCAGTAAAACAGGGAGCCATGGAAGACCACAATGCAGTTATTTAAGGTGAGATTCATTTTAAAAAGTAGAATGTTAATGCAGATTGTTTTCATAAGAATCTTTAGGGGTGCCATTAAACATTTTgagatatatttttttctctgggcaattgtattagtataaaataatgtaaacatttgagcatacaatatagctcaggatttgttcggaaagtattcagacccttt
>TU1650278
GTGATGTGGTCATGATAACATGAACACTGTGGAGCAACAGCGAAGATGCACATATCTAAAATGGCATTGTCCATGAATGGATTTGCTTTCGTTATAGTTTGTCAATGCATTACTGGGATAAAGTACAATCTTGTAAATAATGATAGATTGTTATGTTGGATATCCATCACTGCCCAATGGCAGCaggtacatgtacagtacatgagCACAGTTGCACAATATGAAAGTGTACCATGTGTGGTATAATTTCAGTGGGAAAGCTGGATATTTAGAATTTTTGTGTGTGTTAAATGTCCTCGCATGATAACATGTTTGGTCATTATAATACGGTATGTTGCAAAATTTAAGTTACACCAAAAATACATGTTTGAGCCATTTCTAAAATAGCTGTTTTCACCCCATCCAACCGTTATGTTATTTGGTTTTGTCCAGTCAACCAAACAAATGTTGCTATGCTAGCTCAAAGCACGCATTGGGAACAACTGTAAACCTGTTTAGTAATGCAAATTTATAGAAAAATACCTTGAAAGCAGTGTGGCTTGTTATTTACGCCATTGCTCTCTCTTTGTATTAAAATGAGGGGAAAATCATGATTGTGAACTTTCAATGTATGGTGGAAACCATGGCACCTTTTCAACCAACGTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021568248.2 False 6232 mRNA 0.47 12 34173076 34233684
TU1650278 True 645 lncRNA 0.37 1 34231447 34232091

Neighbor

gene id symbol gene type direction distance location
LOC110493772 LOC106564803 coding upstream 40453 34129926 ~ 34132623 (+)
LOC110493770 LOC106585018 coding upstream 51853 34040261 ~ 34121223 (+)
LOC110493769 LOC106564807 coding upstream 138953 33996168 ~ 34034123 (+)
LOC110493768 hebp1 coding upstream 177360 33983660 ~ 33995716 (+)
LOC110493767 LOC106564808 coding upstream 202976 33937534 ~ 33970100 (+)
LOC110493777 NA coding downstream 8229 34241913 ~ 34254653 (+)
LOC110493778 LOC106564798 coding downstream 56333 34290017 ~ 34317682 (+)
LOC110493783 LOC106564979 coding downstream 197203 34430887 ~ 34443032 (+)
LOC110493785 mal coding downstream 226406 34460090 ~ 34468487 (+)
slc8a1a LOC106564793 coding downstream 276923 34510607 ~ 34560437 (+)
G1441582 LOC106585043 non-coding upstream 31809 34139960 ~ 34141267 (+)
G1441595 NA non-coding upstream 34496 34138126 ~ 34138580 (+)
G1441581 NA non-coding upstream 36281 34136504 ~ 34136795 (+)
G1441580 NA non-coding upstream 44850 34127721 ~ 34128226 (+)
G1441576 NA non-coding upstream 46443 34126320 ~ 34126633 (+)
G1441614 NA non-coding downstream 1514 34235198 ~ 34237791 (+)
G1441844 NA non-coding downstream 84560 34318244 ~ 34319132 (+)
G1441867 NA non-coding downstream 112899 34346583 ~ 34346878 (+)
G1441315 NA other upstream 196601 33976193 ~ 33976475 (+)
G1440890 LOC106564813 other upstream 648542 33524199 ~ 33524534 (+)
G1440162 NA other upstream 1217019 32951800 ~ 32956057 (+)
G1440066 NA other upstream 1375644 32797098 ~ 32797432 (+)
G1439962 LOC106564826 other upstream 1406369 32712860 ~ 32766707 (+)
LOC110493802 LOC106564779 other downstream 935214 35120694 ~ 35184540 (+)
G1443221 NA other downstream 1440280 35673964 ~ 35744642 (+)
G1443251 NA other downstream 1513188 35746872 ~ 35751790 (+)
LOC118940407 NA other downstream 2005260 36234292 ~ 36242642 (+)
G1441652 NA non-coding upstream 2732 34228375 ~ 34228715 (+)
G1441641 NA non-coding upstream 14234 34216908 ~ 34217213 (+)
G1441578 NA non-coding upstream 17342 34143637 ~ 34214105 (+)

Expression


Co-expression Network