pex6 (LOC106564799)


Basic Information

Item Value
gene id pex6
gene name LOC106564799
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 34254192 ~ 34270050 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021568249.2
AAAATATTGCCCAATGCGCATGCGCTTTCCCCAACATGGCAGCTCAGGTAGAACTGTCATGTTTAGATACATTTCCAACGCACTTAAATCCTTTACACGTGCTTGTTATCAAGTCACAATTTAGATATGCGTTTCCAAGTTGCAATGAGCCTACTTCGACCCTTTTATTCACCTCACGGAAGCTTCAGACACTCGGGAAAACTGCCGTTTTGCTCTGCGCGCACTCAACAGAGGAGGCGTCAGGTTGTGGATCGGATGGAAACGACACAACTTTAAAACTGTACACAAGTAAGATCTTTCTCAAACACTATGGTCTCCAGGATGATATAAGGGGAGTTGTACGCTCACTGTCACCGTTTTCCCTTAGAAAAGTTGTTATAGGGGCACGAACAAGACAGAGTTTCAAGTGGGCAAACTCGGAAAAGTTTTCCAATGGACTTCTCGTACTGGCTTCGTGCCAAGGTCAACCACTATTGGCACGACAAGGGGACTCGCTATCACTTCCCTATCACCCTTTACTTGGAGATGATATATCTCAAGTGCAACACTCTCTGTTCGACTTAGTTGTGTTGGAGTGCACACCTATAACGCAGGGGATGATAACAATCAACACAACAGTGGTGGTCACCGACTGCAGAGACATTGCGCAACATGGTGCACTGGAGACCTCGAATGCTTTGGCTACTAGAAATTTGACCTCGCTATTTGTCTCTGATTTTGCACACTACGCGAATAGTCTTGGCGGGGGAAGCTCCTTACTTGACAACAGGCAAGTATTGGACTCGAATTTATCCGCTTTTTTGCAAGCACTGGAGTGTAGGCTGGATGTCAGAATCGTGGATATTCGTCGCTTGTACCGTCAAGGGAGAATTGTACTAGTGGATAAGCGCGATGCTAAAATCGATTTAGACAGTACTGTTTTCGTAAGCAAACAGTTGCTGCTCAAACTCGGGTTATTCAACCGTGAGTGGGTAGTGGTGTCTAGGTTTAACTGCTCATCAGATATGACAAAGACGTCCTACAGAGGCGAGTCCCATCCAAGTCTCGGGCAAGCGGATGATAACGCACCTGGCAAAGAGCCATCTAAGGGCACCGAAATGGTCCACCTCGGCTCGGTTGTTGTGGCAGATTTCAGCAAGTGTGCAGAGTTGGACCTTCAAGACAACGTTGGCTTCATATCGCCGACTCATTGGTTCAACTTGTCGAACGGAGAGCCAGTGCCAGTCAGTAGCAGAGCTGTGAAAATAAAGAGATGGAACCGGGTCGTTTCTCAGTCAGGTCTTCAGCTTTCTGAGAGCCTCTCTCGATCAGCATCACCGCTGTTAGCCAAAGAACTCCACATTGATGCTGTCATCTCCCCAGAATACAGTTCTCATGGTCCCTTTGACAGTATCCTCTGTGAGCACTTTACCATACCAAGACTTGTGCAGCTGGGTGGTGTTTTGGGCATCCCATCTGAAGGGCATCCTGAAGTCTTGGAGAGCAACTCTGAGGGAATCACAAGGTGGCCGGTTGTGTATTTCAAAGTGAAAAAGGTTTGTGGCTCTACAGAGGAGGAAGACCAAGGTCCTTACCTTGCAGACACTGTCCACACATCTCTATACATGGGCGGCTCCACCAATAGCCTGGCTCCCTGTTCCCTTGTTGGCGAGGAGCCTTCCCTCTGGACTAGCCTGTCTCCTCCTGGGCTCTCCAGCACCGTGGACCAATTCTCCACTATCATCCAGCCCCACATGAATGAAAGCTCTGCTGCTCTGATGAGCGGCTGCACCATCCTCCTCCTGGGACCGAGTGGCAGTGGAAAATTCACCTCTGTCAGAGCTGCATGCCGTAGACTCCATCTGCACTTAGTGAAGGTGGACTGCGTGACCCTCTGCGCCGACACAGCCGCCTCCTGTGAGGCGAAGATGAAGTCTGTCTTCCAGCGAGCTGAGGCCCACCGGCCGTGCATCCTGCTGCTCAGGAACCTGCAGTTGCTGGGCCAGCCCAGGGATGGCGCCGAGGAGGATGCCAGGGTCATAGCCGCCCTGTGCCAGTTCATTGCCCAGGCCCCTGCCAGCGTGGTCGTGGTGGCGGCGGTGAGTAAACCCCGGGAGCTGTCGTCTGACGTGATGGCAGCCTTTATCCACCAGGTGTCGATAGAGAGCCCCAGTGAGGAGCAGCGCCGGGCCATGCTGGCCAGCCTCAGCGAAGGCATGCCCCTGGGAAGGGACGTCAACCTGGCCAGGCTGGCCAAGCACACTGCAGGCTTTTTATTGGGGGACCTCAGTGCACTGCTGACTCAGGCTGGTAAATCTGCCCACGCAAGGATACTCCAATCCTGTTTCCCAGAGGGGGCCAGTGTGCAGGAGGAAGAGGACCTCTGTGCCTGTGGGGTAACCGTCCTGGCCCAGGACTTCACCAATGCCTTGGAGACCCTCCAAGACGCCCACTCTCAGGCCATCGGAGCCCCGAAGatcCCCAGTGTGCGCTGGCAGGACGTTGGTGGCCTGCAGCAAGTGAAGCGGGAGATCCTGGACACGGTGCAGCTGCCCCTGGAGAGGCCCGAGCTGCTGTCCCTGGGCCTGCGCCGCGCTGGCCTGCTCCTCTACGGGCCTCCCGGCACAGGCAAGACCCTGCTGGCCAAGGCTGTGGCTACAGAGTGCTCCATGACCTTCCTCAGTGTCAAAGGCCCGGAACTCATCAACATGTACGTGGGTCAAAGCGAGGAAAAcgtgagagaggTTTTCTCCAAAGCTCGAGCGGCGGCCCCTTGTATCATCTTCTTTGACGAGCTGGACTCTTTAGCGCCCAACAGAGGGCGCAGTGGAGACTCTGGTGGAGTCATGGACAGGGTGGTCTCTCAGCTCCTGGCTGAGCTTGACGGACTTCACTCCTCTGGGGACGTGTTTGTGATTGGAGCCACCAACCGGCCAGACCTGCTCGATCAATCATTGCTCAGACCTGGCAGGTTTGACAAATTGGTGTATGTTGGGATCAATGAAGACAAAGAGTCTCAGCTGCAAGTTCTGAAGGCCATAGTCAGAAAGTTCAAGGTGGACCCCAGCGTCAGTCTCCAGGATATAGTGGAACGCTGCCCTCCTCAGCTCACAGGGGCGGACATATATGCTCTCTGCTCCGACGCCATGATGTCTGCCATTAAGAGGAAGGTTGCACGTGTCACCGACGGTCTGGACACCGAGGATACTCCTCTCATACTCTCTGCCGAAGACTTTAACCAAGCATTGGATTGCCTCAAACCGTCCGTCTCTGAACAAGAGCTGCTCAAATATAAACTCATTCAGCAGAAACTCACTGCAAAATAACCAAGCCACCCAAGCCTAGTGCCGCCCAGTTATGGAGCTAAGCTATTCTCTTCTGCATGCACTACGTTACCCCAAATCCTCTACCACAAGCGTTTATTCCTCAAGTGTTGGCTCTGCAAAAAAACTGTGCTTGTGAAATTATCTTCCTTTTCTCTGCACTAATGAGTGAATGAGCAGTGTCATTTAGGCCAAGGGACCAAACTAGTACACAACCTAATTAATGCAAAATATTGTAAGTGGACCACATTTGTACAGTTTGCGATTTGCAAAATCAATCTGAACAGTCAACGTAAGGTTTGTGCTGTATATTTGTAACCACTAGTTTCTGAATTGATCTTAACTGAACTTGGCAGTGTTAATGGCAGCAACAAATGCATATGAACGTTGTTCAAATGAAAACTAGTATATCCATGTCCCAACTTTACTCCTAGGAGGGCCATCACTTTCCTATATTCTCAGTGACACTAATGCTGCTGTTCTGTTTAGTTTCTCTAGTCTCACTGGAGTTACTAGCCATATGTTGTCCAATTGAATTCCATTAATTGCAAAGTTGACTCTCAACTTTGAGTCTTGCATTTCAACAGGATGTTCCAAATCTGAGTGGTTTATTATTCCAATGCTTCCCCAACCTGAACTATTTTGAATGCTGGTTTCTTTTACAAGCCATCCTTTCAGAGACTTGTTTGAGCAACAAAAGACCCAGCCAAGCCATCAAACAgtttaaataaaaacaatgaatGTAATGAGTTGATGGAAAACCAGCATACTCAAGTTCTCCTAGACCAAGTTTTGGGTAACACTGGTTGATGCTGAGTTTCCCCTTCCACCCTGTAGATCATTTGCATAAAATAAATTCAGTAATACAAAATTCACTATTatgaaacattttaaaaacatgaaTCACTTAAGTACAGTTTAGAACAAATACACATTGAAACTAAGCTACCGCATTTATCCACGAGAGTTAATCCGGTCACACTTTATATTAAGTTGGCAGTTTATTGTTTTAAGAAATCATTTGTTACAGCatgagtgtgtatatatgagtaACAAAGCTGAAGTTCCTCTGAGTGACGTATTGTTGGAGGAATTTCAATGTGTATGGTTCAAACCAGAGTTGAGCTTGAACTAGAGTTTAGTAATTATCTACGTTAATTTAGACTATTCCAATTTTGAAGATTGTATAACGGAAGTGAATGTATTTACATGTGAAATGGGACAACTTAGTATAAAGTGTAACCATGAAAAATGAGTAATTTATCATATTCAAAGATTGCTATCAATGTGAAAAACGATACTTATATTTTTGTATGGTGAGACATTGTGCTTCCCATCTCATGGTAGCAAAAATGACAATAGGATTACAAAAGTAAGACAAACAAATCTATAAATAGTTAATTGTGTTAACTATAACTTTCAAATGGTGCAAACTTTTTTTGCTAGCGAGGTTAAGTGTTTGTAATTTAtgatctgatttaaaaaaaagagtgTATTACTTGGGTTGGTAAAATAAACTTTACCAAAAATA

Function

NR:

description
peroxisome biogenesis factor 6

GO: NA

KEGG:

id description
K13339 PEX6, PXAAA1; peroxin-6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021568249.2 True 4833 mRNA 0.48 17 34254192 34270050
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Neighbor

gene id symbol gene type direction distance location
LOC110493774 LOC106564802 coding downstream 88070 34146075 ~ 34166122 (-)
LOC110493771 LOC106564804 coding downstream 109929 34133047 ~ 34144263 (-)
LOC110493773 NA coding downstream 125935 34123017 ~ 34128257 (-)
LOC110493171 NA coding downstream 420228 33825265 ~ 33833964 (-)
catl catl coding downstream 442587 33798978 ~ 33811605 (-)
slc22a7a LOC106564980 coding upstream 60990 34331040 ~ 34344763 (-)
ttbk1a LOC106564797 coding upstream 78717 34348767 ~ 34397687 (-)
tpcn3 tpc1 coding upstream 143493 34413543 ~ 34430556 (-)
pgap4 tmem246 coding upstream 176306 34446356 ~ 34468485 (-)
LOC118940658 NA coding upstream 226570 34496620 ~ 34496669 (-)
G1441758 NA non-coding downstream 15148 34238727 ~ 34239044 (-)
G1441669 LOC106585018 non-coding downstream 155033 34060713 ~ 34099159 (-)
G1441509 NA non-coding downstream 258499 33992263 ~ 33995693 (-)
G1441499 NA non-coding downstream 272204 33981781 ~ 33981988 (-)
G1441488 NA non-coding downstream 290971 33960585 ~ 33963221 (-)
G1441832 NA non-coding upstream 32242 34302292 ~ 34308705 (-)
G1441837 NA non-coding upstream 32811 34302861 ~ 34303469 (-)
G1441845 NA non-coding upstream 48190 34318240 ~ 34319107 (-)
G1442136 NA non-coding upstream 85996 34356046 ~ 34356269 (-)
LOC110493763 LOC106564812 other downstream 837839 33413110 ~ 33515866 (-)
G1440786 NA other downstream 867664 33385937 ~ 33386528 (-)
G1440781 NA other downstream 871473 33381901 ~ 33382719 (-)
G1440711 NA other downstream 1001813 33238621 ~ 33252379 (-)
G1440683 LOC106606817 other downstream 1059917 33189835 ~ 33194275 (-)
G1442139 NA other upstream 90052 34360102 ~ 34361306 (-)
G1442336 LOC106564790 other upstream 450377 34720427 ~ 34720792 (-)
G1442443 NA other upstream 634032 34904082 ~ 34904616 (-)
LOC110493800 LOC106564782 other upstream 790149 35023723 ~ 35061975 (-)
G1442932 rbbp9 other upstream 958704 35228754 ~ 35232154 (-)

Expression

pex6(LOC106564799) Expression in all Baseline Samples

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The chart has 1 Y axis displaying values. Range: 0 to 20.
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pex6(LOC106564799) Expression in each Bioproject

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pex6(LOC106564799) Expression in each Sample
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The chart has 1 Y axis displaying Expression. Range: 0 to 100.
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Co-expression Network