Gene
RNA
| Item | Value |
|---|---|
| gene id | ttbk1a |
| gene name | LOC106564797 |
| gene type | misc |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048581.1 |
| NCBI id | CM023235.2 |
| chromosome length | 95212422 |
| location | 34348767 ~ 34397687 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| PREDICTED: tau-tubulin kinase 1 isoform X4 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_036948372.1 | False | 6861 | mRNA | 0.52 | 17 | 34348767 | 34397687 |
| TU1650873 | False | 1808 | lncRNA | 0.48 | 2 | 34349680 | 34351812 |
| TU1650877 | True | 1841 | lncRNA | 0.42 | 1 | 34361417 | 34363257 |
34,320,000
34,330,000
34,340,000
34,350,000
34,360,000
34,370,000
34,380,000
34,390,000
34,400,000
34,410,000
NC_048581.1
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| slc22a7a | LOC106564980 | coding | downstream | 4004 | 34331040 ~ 34344763 (-) |
| pex6 | LOC106564799 | coding | downstream | 78717 | 34254192 ~ 34270050 (-) |
| LOC110493774 | LOC106564802 | coding | downstream | 182645 | 34146075 ~ 34166122 (-) |
| LOC110493771 | LOC106564804 | coding | downstream | 204504 | 34133047 ~ 34144263 (-) |
| LOC110493773 | NA | coding | downstream | 220510 | 34123017 ~ 34128257 (-) |
| tpcn3 | tpc1 | coding | upstream | 15856 | 34413543 ~ 34430556 (-) |
| pgap4 | tmem246 | coding | upstream | 48669 | 34446356 ~ 34468485 (-) |
| LOC118940658 | NA | coding | upstream | 98933 | 34496620 ~ 34496669 (-) |
| tmem178 | LOC106564792 | coding | upstream | 193162 | 34589353 ~ 34605070 (-) |
| gemin6 | gemin6 | coding | upstream | 387850 | 34785537 ~ 34788361 (-) |
| G1441845 | NA | non-coding | downstream | 29660 | 34318240 ~ 34319107 (-) |
| G1441832 | NA | non-coding | downstream | 40062 | 34302292 ~ 34308705 (-) |
| G1441837 | NA | non-coding | downstream | 45298 | 34302861 ~ 34303469 (-) |
| G1441758 | NA | non-coding | downstream | 109723 | 34238727 ~ 34239044 (-) |
| G1441669 | LOC106585018 | non-coding | downstream | 249608 | 34060713 ~ 34099159 (-) |
| G1442172 | NA | non-coding | upstream | 27267 | 34424954 ~ 34425944 (-) |
| G1442188 | NA | non-coding | upstream | 62907 | 34460594 ~ 34465401 (-) |
| G1442194 | LOC106564793 | non-coding | upstream | 74094 | 34471781 ~ 34560447 (-) |
| G1442241 | NA | non-coding | upstream | 164884 | 34562571 ~ 34562802 (-) |
| LOC110493763 | LOC106564812 | other | downstream | 932414 | 33413110 ~ 33515866 (-) |
| G1440786 | NA | other | downstream | 962239 | 33385937 ~ 33386528 (-) |
| G1440781 | NA | other | downstream | 966048 | 33381901 ~ 33382719 (-) |
| G1440711 | NA | other | downstream | 1096388 | 33238621 ~ 33252379 (-) |
| G1440683 | LOC106606817 | other | downstream | 1154492 | 33189835 ~ 33194275 (-) |
| G1442336 | LOC106564790 | other | upstream | 322740 | 34720427 ~ 34720792 (-) |
| G1442443 | NA | other | upstream | 506395 | 34904082 ~ 34904616 (-) |
| LOC110493800 | LOC106564782 | other | upstream | 662512 | 35023723 ~ 35061975 (-) |
| G1442932 | rbbp9 | other | upstream | 831067 | 35228754 ~ 35232154 (-) |
| LOC110495171 | cssa12h2orf73 | other | upstream | 1218017 | 35615229 ~ 35617995 (-) |
| G1442151 | NA | non-coding | upstream | 4121 | 34367378 ~ 34367606 (-) |
