Gene
RNA
| Item | Value |
|---|---|
| gene id | tpcn3 |
| gene name | tpc1 |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048581.1 |
| NCBI id | CM023235.2 |
| chromosome length | 95212422 |
| location | 34413543 ~ 34430556 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| symbol | description |
|---|---|
| tpc1 | Enables antiporter activity and thiamine transmembrane transporter activity. Involved in mitochondrial thiamine pyrophosphate transmembrane transport. Predicted to be integral component of mitochondrial inner membrane. Is expressed in several structures, including adult head; adult heart; atrium; and presumptive embryonic/larval system. Human ortholog(s) of this gene implicated in inherited metabolic disorder and microcephaly. Orthologous to human SLC25A19 (solute carrier family 25 member 19). |
| description |
|---|
| two pore calcium channel protein 1-like |
| id | name | namespace |
|---|---|---|
| GO:0034220 | ion transmembrane transport | biological_process |
| GO:0016021 | integral component of membrane | cellular_component |
| GO:0005216 | ion channel activity | molecular_function |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_021568259.2 | True | 3459 | mRNA | 0.44 | 19 | 34413543 | 34430556 |
34,402,000
34,404,000
34,406,000
34,408,000
34,410,000
34,412,000
34,414,000
34,416,000
34,418,000
34,420,000
34,422,000
34,424,000
34,426,000
34,428,000
34,430,000
34,432,000
34,434,000
34,436,000
34,438,000
34,440,000
NC_048581.1
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| ttbk1a | LOC106564797 | coding | downstream | 15856 | 34348767 ~ 34397687 (-) |
| slc22a7a | LOC106564980 | coding | downstream | 68780 | 34331040 ~ 34344763 (-) |
| pex6 | LOC106564799 | coding | downstream | 143493 | 34254192 ~ 34270050 (-) |
| LOC110493774 | LOC106564802 | coding | downstream | 247421 | 34146075 ~ 34166122 (-) |
| LOC110493771 | LOC106564804 | coding | downstream | 269280 | 34133047 ~ 34144263 (-) |
| pgap4 | tmem246 | coding | upstream | 15800 | 34446356 ~ 34468485 (-) |
| LOC118940658 | NA | coding | upstream | 66064 | 34496620 ~ 34496669 (-) |
| tmem178 | LOC106564792 | coding | upstream | 160293 | 34589353 ~ 34605070 (-) |
| gemin6 | gemin6 | coding | upstream | 354981 | 34785537 ~ 34788361 (-) |
| LOC118940117 | NA | coding | upstream | 383797 | 34814353 ~ 34815153 (-) |
| G1442151 | NA | non-coding | downstream | 45937 | 34367378 ~ 34367606 (-) |
| G1442136 | NA | non-coding | downstream | 57274 | 34356046 ~ 34356269 (-) |
| G1441845 | NA | non-coding | downstream | 94436 | 34318240 ~ 34319107 (-) |
| G1441832 | NA | non-coding | downstream | 104838 | 34302292 ~ 34308705 (-) |
| G1442188 | NA | non-coding | upstream | 30038 | 34460594 ~ 34465401 (-) |
| G1442194 | LOC106564793 | non-coding | upstream | 41225 | 34471781 ~ 34560447 (-) |
| G1442241 | NA | non-coding | upstream | 132015 | 34562571 ~ 34562802 (-) |
| G1442243 | NA | non-coding | upstream | 133708 | 34564264 ~ 34564704 (-) |
| G1442139 | NA | other | downstream | 52237 | 34360102 ~ 34361306 (-) |
| LOC110493763 | LOC106564812 | other | downstream | 997190 | 33413110 ~ 33515866 (-) |
| G1440786 | NA | other | downstream | 1027015 | 33385937 ~ 33386528 (-) |
| G1440781 | NA | other | downstream | 1030824 | 33381901 ~ 33382719 (-) |
| G1440711 | NA | other | downstream | 1161164 | 33238621 ~ 33252379 (-) |
| G1442336 | LOC106564790 | other | upstream | 289871 | 34720427 ~ 34720792 (-) |
| G1442443 | NA | other | upstream | 473526 | 34904082 ~ 34904616 (-) |
| LOC110493800 | LOC106564782 | other | upstream | 629643 | 35023723 ~ 35061975 (-) |
| G1442932 | rbbp9 | other | upstream | 798198 | 35228754 ~ 35232154 (-) |
| LOC110495171 | cssa12h2orf73 | other | upstream | 1185148 | 35615229 ~ 35617995 (-) |
