XLOC_033264


Basic Information

Item Value
gene id XLOC_033264
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 58731298 ~ 58733557 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00065263
GGGATCACGGCATGTTTTATTCAGGATCTTCAAGCACCATCAACACAAAAACTGAAGCAGACAATGAAACCACTGACCAAAACAAAACCACAGTGCAAGAGAAAACAGCATCACTGCATAATGCGCACAGAAAGAGCATGTGTCTGATTCCAAACAACCCACAGTGAGTCCTGAATGCATTCATGAACAACATGCACAACTGACGGACACGTGAGAAAGAAAAGAGCTAGCATCTGAAAGTCAAGTCAACAAGCAAAAACAAGAggattattagtaataataataataatatccacAGAATATTCTCTCACTGACCGTCATTCAGCGGTCGGTCACATGGCATAAGAGGATAAATCAGACTCCAgcgtctgaacactgtaaataAGCACAGAATCCTCCTTTTGATGACATTAATGTGGCTTTCATAAGAGTTCAATCCCAGAGGAAATGCAGGAATCTCCATGAAACACAGAACTGAGCTCAGTGATGCTGAAGAACACACACAGATCTGCTGCTTTACACAACGAAGACCGCAGTATAAACTGtgcaaatgaaaatgaaacacaCACGGGTCATTCTGTCAAACAGgtggatttaaaataaatgacactTAGAGAAGACAATGGCAGACTGCACCATCTAAAGCTAAacgaatatttattttaaaaacattaagggTTATATAAGAAGGGTTTTGAGGTCTCGACTGtacttttttgtaaatatttattgctattttagtCGAGACTTTTAAAAATCtgaagctttttaaaatgtccaaattctttaaaagtaaaataataacgTAAAGGATTTACAAAATAaggcaataaaaatattaaacaaaatattaaatactaaaatattagGTGTCACATTAtattgatggtccgtttgttgagtgtaagttacattgcatctacatgccaactaatgctcattagattataagtagactgttaggttggggttggggttagtgtgagttgacatgtacttgcaaagtttcctatagtcagttaaatgtgttgaaggagcagcatcagcagatattaagcagacagtctactaatactcaaatggaccattgtaataaagcagtaccaaatattaataaaaagtccAAAAATTCGTAAATTAGACCAAAGGATgtggacattttaaaataaaaaataaattaacttacTTAAACATTTGTATTTTCTGCTAGtttcaaataactaaataattactggaaataaataaataaagtaaaactaaaaaagaaaagaaaatgtagtcactttatttatttgcatttattattcaGTTATTAAATATTAGGCAATTAGGTAAATTAAATGAgtgctttttgtttgatttattggtttcatttaaaaacaactgtactttttttttttactattatttattatatatttaattcttaaatttatttttgcagttatttaaaaCTGGCGGAAACTACAGATGTTATTTGGCAACTAGGtcaattaaatgtatgttttttatttgtttaggtTTATTTACATTTCCACATCCTTTGGTCTCATTTAGAAATGACtgtccttttattattatttatgttgagGCTTTTTCCCtcattttattccttttttaaatgtccaaattctttacATTTTATTTCCTTTAGTTTACTTttcatcactttattttttatttgctgttgtTATTCAGTTATTTAACTGGCAGAAAATACAAAATGCTTATTGggcaattaaataaatgtttctttgtttttaaacagGTCCACGTTGAGAAAAGactcaatatatttatattattcaatataaatttaacatttattaaagtcataacattttaaagacaacaatgaaaataatttgGTTATGTTGTTCctcattttatcattatttttaattttataaaaagtaaaaaaatactaCTATTTCATGACCTATTTCAGTTAttttgaagataaaataaatgacaattaaacacattttccTTGCTAA

Function

GO:

id name namespace
GO:0001704 formation of primary germ layer biological_process
GO:0001707 mesoderm formation biological_process
GO:0045995 regulation of embryonic development biological_process
GO:0001710 mesodermal cell fate commitment biological_process
GO:0001711 endodermal cell fate commitment biological_process
GO:0001714 endodermal cell fate specification biological_process
GO:1905770 regulation of mesodermal cell differentiation biological_process
GO:0022603 regulation of anatomical structure morphogenesis biological_process
GO:0007498 mesoderm development biological_process
GO:0007501 mesodermal cell fate specification biological_process
GO:0036342 post-anal tail morphogenesis biological_process
GO:0015849 organic acid transport biological_process
GO:0045165 cell fate commitment biological_process
GO:1903224 regulation of endodermal cell differentiation biological_process
GO:0010453 regulation of cell fate commitment biological_process
GO:0046942 carboxylic acid transport biological_process
GO:0010470 regulation of gastrulation biological_process
GO:2000027 regulation of animal organ morphogenesis biological_process
GO:1905902 regulation of mesoderm formation biological_process
GO:0048332 mesoderm morphogenesis biological_process
GO:0007369 gastrulation biological_process
GO:0048646 anatomical structure formation involved in morphogenesis biological_process
GO:0050793 regulation of developmental process biological_process
GO:0060795 cell fate commitment involved in formation of primary germ layer biological_process
GO:0042659 regulation of cell fate specification biological_process
GO:0042661 regulation of mesodermal cell fate specification biological_process
GO:2000380 regulation of mesoderm development biological_process
GO:0042663 regulation of endodermal cell fate specification biological_process

KEGG:

id description
ko03230 Viral genome structure
ko02010 ABC transporters
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00065263 True 1997 lncRNA 0.30 2 58731298 58733557

Neighbor

gene id symbol gene type direction distance location
XLOC_033263 NA coding downstream 58718 58670705 ~ 58672580 (-)
XLOC_033261 tox2 coding downstream 582133 57900237 ~ 58149165 (-)
XLOC_033262 NA coding downstream 648663 58081635 ~ 58082635 (-)
XLOC_033260 NA coding downstream 941273 57787720 ~ 57790025 (-)
XLOC_033259 CABZ01087330.2 coding downstream 961640 57769542 ~ 57769658 (-)
XLOC_033265 soat2 coding upstream 3611 58737168 ~ 58764672 (-)
XLOC_033266 kif5ab coding upstream 38652 58772209 ~ 58828398 (-)
XLOC_033267 mbd6 coding upstream 138043 58871600 ~ 58910402 (-)
XLOC_033268 mars1 coding upstream 187683 58921240 ~ 58975019 (-)
XLOC_033269 NA coding upstream 314350 59047907 ~ 59050828 (-)
XLOC_033257 CU693502.1 non-coding downstream 1100134 57630414 ~ 57631164 (-)
XLOC_033270 NA non-coding upstream 317429 59050986 ~ 59053205 (-)
XLOC_033271 NA non-coding upstream 333398 59066955 ~ 59068903 (-)
XLOC_033272 CABZ01111575.1 non-coding upstream 403114 59136671 ~ 59136787 (-)
XLOC_033273 NA non-coding upstream 434503 59168060 ~ 59171539 (-)

Expression


Co-expression Network