pgap4 (tmem246)


Basic Information

Item Value
gene id pgap4
gene name tmem246
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 34446356 ~ 34468485 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021568264.2
TATCTTCAACCTAGCCTTCCTTTAGCTAGCTGCTGGTAACAGTTAGCTGATCTGCAGTGCAAACTATCTTGACTTTGTATAAAGGTAGAGAAACTTGTTGAGGGAAAAGTAATTAAACATGTTTTATAACCTCAAGCtatatatttgtcctgtttcttGAACGAAAAGGTAATTTTGCAATATCCCAAAATAAATGCAATCTCTGACGAGAGACAGGCTTTCCTCCATTTTGCGACTTTTACAAAGACGACACCAAAGACGTtttaactaacccaagatagaccacagcctgtcctttccaatggaaacAAATGCATCCTAGTGGGCAAAGCCAAGTACAAGCTAGcgatatctgtctcattgttcaaTCTGTGACTAGTCTTGTTCAGTAGGGTAAAGATATACGTTACGATGTAAACCGGGCATCAGGTGTTGTTGGAAGATCACCATTTAAAATGCAGAATTTAAGTGCGCATTTTGAAACAACCCTTGATTCTAGCTACGGCAGCCATGTAGCAACTATGTTACCACATTGGAAGTTATGTTTCTCCTGGAACATGGGATCTAATGGAACCGTGGAATGCTGCAGGTAGCAGCAGTGTTTGTAGATGGTCTACAGTTGGAGACTTTTAATTGGCTTTTCCTTGGCCAGAGATACAATATCAAACGTGGATATCTACTTTTGTACACATTTTGCTGGAGGATAAAAGCTATGAAAAGCAACCATATCAATGCTTTGCGTACAGAGCTTTTATTTTTGCTGTTCCGGTCTGGTTGCTTTGACATCAGTTTTCACTACACTAGTTCGCCTTTAGCCACCACAACTCTTTCACACAGCCAACCTGGAAATTAACAGTTGTATGAAGGTGTTGCCAAACCCTAACATTGCAAACCGCTCAGATCAAATATCCCCTTTTACATAAGGTTTGTTAAATCATTATTGAGACCTGAATCTTttttctacttttttttttttactcaacacTACAATACTCATCTTTACCAATGCCTCGATGGAAAGCTCTGGCGAGCCAGCATTTACGGTGGTCCAGCCCTGTTGCCCAAGGACTAGTTTTATGTATCGTAACGTTTGGCATCGTACTGCCATTGTGCTGCCACAGGCTACTCTATTCCTACTACTACATTAAATCGATGTACTTGAATGACATGAGCGATCAGTTTCTAGCGGAGAGCTACGAGAGAGGGCAGGAGGCTTTGGAATTCTGGGAGGCATCACGGTCTACCACTGGGTCGGCTGGCTTTTCCAACATCGTCAAGGGATCCGAGCTGTTGATCACTGTGGTAACGGCCAGGCGAACGGAGGGCAAGGAATTTCACTACCTGCTTCAAGTGATGCAGCGGCTGGTTTCCCTCCTGAGAGGATGCGGCGAGGGACGGCGTTGCGCTGAAGTGCTGGTGTGTGATGTGGAAAGCGGTCCCCTGGACAACGAGGATGCGGCGCTACTGGAGAGCCAGTTCTTGGTGGTGCGGAGGTCCCTGGAGGAGCAGTGGAAGAACCAGGCTCACGTCAACACCtttgagagggagaagagggactACGTCTACTGTCTGCGCAAAGGATGGGAGCTGGCAAGCCCCAAAAACTTGATGGTCCTTGAGGACGACGCATTACCCAGGGCGGACTTCTTTGCCGTGATCCAAGATTTACTCTCTCGGCGCTTCGCCCTCCACACCCTCTACGTCAAGCTCTACCACCCGGAGAGGCTGCAGCGCTACTGGAACCCCGAACCCTACCGCATCCTGGAATGGGTGGGACTTGGACTAGTTGGGGCTACCGCACTCCTCCTAATCCTTAGTCACGGTacacctttctctttctccctctccaccacccacctcctcttcctcactttGTACATCATGGTCGCCGTAGAGCTGGCTGGTCGGCATTACCTACTCGAGGTACGGCGCTTCTCGCCGCAGCTCTACGCCGTGTCCCCGGCGACCGAGTGCTGCACACCTGCCATGCTGTTTCCGGGTAACTCATCCCTCAGGGCGGCGGAGTACCTGGATGGATCATTCTGCGTCAAGGGCAATGCTAAGGACATGGTTCTGTATCAGATGGCTCGGACTATAACCGGAGAGAGAGCGCACAGCATAGAGCCCAACCTGGTCTCCCACATCGGGGCTTTCTCCTCAGTCAGGGCCAACCCATCCAGGCCTAGACTTCTTTGAGGAACAACTGAAAAGAGATTTCAGGCTGCGTCCCAGATTGcactgtattccctatatagtgcactattaggGCCAAtagaactctggtcaaaagtaatgcatgtagggaatagggtggcatttaaTCAGGGTTGGAGACTATTCCATTTCAactcaggaagtaaactgaatttaaatggaatttacTCCAATCCTTTTGATAAATATGACTGAATATCACCATACAGGGTTACCTAACACTCCATAGGGATACATAGCACTGTGTTAGCATCCCTGACATATACCCAAATCCAACCAATGGTGCCTGTAATGATAGTCCTTGATGGATATTGAAGGTCTCTCCAGCCTACTGTAAGATTTTACCCATGTAAATTGATCTATTTAACCCATCTAGGCTAGATCTATTTCTCTTATGCAATATTTGGGTACACTCCACACACATTGGGTACACTTTGGAATACAGTATGTTCTATGTTGGCATAACCATGTACTGCACCTTCAGGGGGAAGGTTCAAATGAGATGTATCATTTAAAATACCAAAACGTATTGCTGTAGTTGTTGAACTAAGGCTAATGATAATCAAAGGATTAACTACTTTAATAGGTTGTTAAAATCTAATTTAACCATTGGACAATGGCAATATTGCTGGATTGTGACACTTTGAATGTCTGACACTTTGAATGTCTGAAAGAAAAACAATTAAATGTATTAAGATATACTCTTTAAACCTTTGTTTATTTAGTGATTTGATGCTGTGTGCTTATATCATACAtgctgtacactgagtgtacaaaaggTTAGGAACaggtgctctttccatgacagactgaccaggttaatccaggtgaacgctgctgtgtttttcacgctcCAGTTTCCCATTTGTATCAGGAATGattcaccatccaaaggacatccagccaacttgacaactgtgggaagcattggagtcaacatgggccagcatccctgtagaacgctttcgacaccttgtagattccattccctgatgaattgaggctgttatgagggcaaaaaggggtgcaacttaatattatggtgttcctactgttttgtacactcatgtTGACCTTAGACACTGTATAACTAGCATCCATGTGTGTTTTATCACTTTCTTTTTTTGAATACTACACTGTGTACACTTAACACTTCtaataaaataatacatatcATGTAA
>XM_021568263.2
TTGGATTTTGCTTTTGTCTTATTTTCGTTTACAGTTTGCTGTCAATTGTTTGGTTTTTGATTAACATCCATTATTTCACCCGTCCTCGAAAATATACTGTTAACATTCTTAACTTTATTTTTAATGTTCACGATTTGTTTTCTTTTTAAATCAATACATATGGTACGGATAAGTAACATATTTTAAGCGCTCTGCGTTCTCCCCTCAACGTCTCCCATACCAGACAGTTTGCTCTCTGAAGCCTCGTTCACGTACGCAAAACCATATACACTCCGTTACGTTACGCCGGATGTCATGCATTTCAATTGGGACACCCCCTTGCGGTCGAAGGCTCCGTTGCGAGACGAACAGCGCATATTTTGATATTTTTCTAACTTTTCCTCGTCTTCAGTCCAGAGTCCGTCGAAGAACAGGAAGTTACCAAACCACAGGAGATGGAAATATGTGGTTTTAGGAAATGGCTTTATGGGATAGCTAGCAACTTGTTGTGAACAATTACCCATTCCTTAAATTTCTCCTGGAACATGGGATCTAATGGAACCGTGGAATGCTGCAGGTAGCAGCAGTGTTTGTAGATGGTCTACAGTTGGAGACTTTTAATTGGCTTTTCCTTGGCCAGAGATACAATATCAAACGTGGATATCTACTTTTGTACACATTTTGCTGGAGGATAAAAGCTATGAAAAGCAACCATATCAATGCTTTGCGTACAGAGCTTTTATTTTTGCTGTTCCGGTCTGGTTGCTTTGACATCAGTTTTCACTACACTAGTTCGCCTTTAGCCACCACAACTCTTTCACACAGCCAACCTGGAAATTAACAGTTGTATGAAGGTGTTGCCAAACCCTAACATTGCAAACCGCTCAGATCAAATATCCCCTTTTACATAAGGTTTGTTAAATCATTATTGAGACCTGAATCTTttttctacttttttttttttactcaacacTACAATACTCATCTTTACCAATGCCTCGATGGAAAGCTCTGGCGAGCCAGCATTTACGGTGGTCCAGCCCTGTTGCCCAAGGACTAGTTTTATGTATCGTAACGTTTGGCATCGTACTGCCATTGTGCTGCCACAGGCTACTCTATTCCTACTACTACATTAAATCGATGTACTTGAATGACATGAGCGATCAGTTTCTAGCGGAGAGCTACGAGAGAGGGCAGGAGGCTTTGGAATTCTGGGAGGCATCACGGTCTACCACTGGGTCGGCTGGCTTTTCCAACATCGTCAAGGGATCCGAGCTGTTGATCACTGTGGTAACGGCCAGGCGAACGGAGGGCAAGGAATTTCACTACCTGCTTCAAGTGATGCAGCGGCTGGTTTCCCTCCTGAGAGGATGCGGCGAGGGACGGCGTTGCGCTGAAGTGCTGGTGTGTGATGTGGAAAGCGGTCCCCTGGACAACGAGGATGCGGCGCTACTGGAGAGCCAGTTCTTGGTGGTGCGGAGGTCCCTGGAGGAGCAGTGGAAGAACCAGGCTCACGTCAACACCtttgagagggagaagagggactACGTCTACTGTCTGCGCAAAGGATGGGAGCTGGCAAGCCCCAAAAACTTGATGGTCCTTGAGGACGACGCATTACCCAGGGCGGACTTCTTTGCCGTGATCCAAGATTTACTCTCTCGGCGCTTCGCCCTCCACACCCTCTACGTCAAGCTCTACCACCCGGAGAGGCTGCAGCGCTACTGGAACCCCGAACCCTACCGCATCCTGGAATGGGTGGGACTTGGACTAGTTGGGGCTACCGCACTCCTCCTAATCCTTAGTCACGGTacacctttctctttctccctctccaccacccacctcctcttcctcactttGTACATCATGGTCGCCGTAGAGCTGGCTGGTCGGCATTACCTACTCGAGGTACGGCGCTTCTCGCCGCAGCTCTACGCCGTGTCCCCGGCGACCGAGTGCTGCACACCTGCCATGCTGTTTCCGGGTAACTCATCCCTCAGGGCGGCGGAGTACCTGGATGGATCATTCTGCGTCAAGGGCAATGCTAAGGACATGGTTCTGTATCAGATGGCTCGGACTATAACCGGAGAGAGAGCGCACAGCATAGAGCCCAACCTGGTCTCCCACATCGGGGCTTTCTCCTCAGTCAGGGCCAACCCATCCAGGCCTAGACTTCTTTGAGGAACAACTGAAAAGAGATTTCAGGCTGCGTCCCAGATTGcactgtattccctatatagtgcactattaggGCCAAtagaactctggtcaaaagtaatgcatgtagggaatagggtggcatttaaTCAGGGTTGGAGACTATTCCATTTCAactcaggaagtaaactgaatttaaatggaatttacTCCAATCCTTTTGATAAATATGACTGAATATCACCATACAGGGTTACCTAACACTCCATAGGGATACATAGCACTGTGTTAGCATCCCTGACATATACCCAAATCCAACCAATGGTGCCTGTAATGATAGTCCTTGATGGATATTGAAGGTCTCTCCAGCCTACTGTAAGATTTTACCCATGTAAATTGATCTATTTAACCCATCTAGGCTAGATCTATTTCTCTTATGCAATATTTGGGTACACTCCACACACATTGGGTACACTTTGGAATACAGTATGTTCTATGTTGGCATAACCATGTACTGCACCTTCAGGGGGAAGGTTCAAATGAGATGTATCATTTAAAATACCAAAACGTATTGCTGTAGTTGTTGAACTAAGGCTAATGATAATCAAAGGATTAACTACTTTAATAGGTTGTTAAAATCTAATTTAACCATTGGACAATGGCAATATTGCTGGATTGTGACACTTTGAATGTCTGACACTTTGAATGTCTGAAAGAAAAACAATTAAATGTATTAAGATATACTCTTTAAACCTTTGTTTATTTAGTGATTTGATGCTGTGTGCTTATATCATACAtgctgtacactgagtgtacaaaaggTTAGGAACaggtgctctttccatgacagactgaccaggttaatccaggtgaacgctgctgtgtttttcacgctcCAGTTTCCCATTTGTATCAGGAATGattcaccatccaaaggacatccagccaacttgacaactgtgggaagcattggagtcaacatgggccagcatccctgtagaacgctttcgacaccttgtagattccattccctgatgaattgaggctgttatgagggcaaaaaggggtgcaacttaatattatggtgttcctactgttttgtacactcatgtTGACCTTAGACACTGTATAACTAGCATCCATGTGTGTTTTATCACTTTCTTTTTTTGAATACTACACTGTGTACACTTAACACTTCtaataaaataatacatatcATGTAA
>TU1650870
ATGTTTCATAACACCTTTATTAGAATGTAACAGTACGTGGATCCATCAAGATCAACATTTTACAGAAATGCTATCAGTAGCAAAGcatataaaaacaaacaaacaaatatttcattacattttacatttctGGTTTGTTCAATAAAATGTGGTAGATTCATTGAAAAAAttataaaagtaaaaaaaaaatgtaaaataaaaaatgtaactgTAATAATTGACTTAGTAGCCCATCATTACTTTTTAATTATAGGTTTGCTTTCGTATGGTTAGTACTCCAAGAGGGATCTGGTTCTGCATatgttcacttcccttcatggatttaAAAATAAAGGACATGTAGGCCTATGATGGCCATTCCCTCTAGTCTAAACCATGCTTAAACCAATCATTTGCTTTTGAatatgtagggggggggggggtgcacacTTTAGGAGAATGATAGAGAATTGGAATGCAGAGCAGGTAGATTTCTTCTTTACCTCAGGGTATTGGCCATGcagtacagtacaccacagcCCTCCATGGTTTCAAATGGTAGATTTAAGACCTCTTCTTTGACTGAGGCTTTTAGCATCGTTCTAGTTTAGAAGGACTTCCACCTGATGGCCGAAAAGATGGTGTGGATGAAGTAGAGGAGTGTGGCCACGTAAGAGAACACCTGGGAGAGTAAGAACATATAGTCAGCAACAACCGGGGGTGACATTAAACAGATATTCAACTGGGACTCAAACTCTGGTCCAGTGACTGTCAACCCAACACCTTAGCCGTTAGGACAAGAGATCTGAACTCCTTGACAAGGTCAGTAGGTGTTTGATTGAAATCGCAACAATATCTTCCACCTTTGGATGGGTAACAAACACACAATGAATAGGCACAAGTTTGGGGAACTCAGTACATAAATCTAGCCTACTGTTAGACAGTTGAACGCCCACAATCCCTACGAATAAGAAAGAGTACCAAAATGAGTTCAAGCAGAAACGGAGTGCACAATTATAGTTAAAGTAATATTTATGTAACAGGAATTTATTCTGTGGTCGAAGCTGTAACTAATTAAAGCGGATGAAATCCTTTCAATCATTCCTTTTACTTTGGGATTGAGACCCCCTAAtgcattgagtgtacaaaacattaagaccccctgctctttccatggcatcgactgaccaggttaatccaggtgaacgctgctgtgtttttcacgctcCAGTTTCCCATTTGTATCAGGAATGattcaccatccaaaggacatccagccaacttgacaactgtgggaagcattggagtcaacatgggccagcatccctgtagaacgctttcgacaccttgtagattccattccctgatgaattgaggctgttatgagggcaaaaaggggtgcaacttaatattatggtgttcctactgttttgtacactcatgtTGACCTTAGACACTGTATAACTAGCATCCATGTGTGTTTTATCACTTTCTTTTTTTGAATACTACACTGTGTACACTTAACACTTCtaataa

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021568264.2 False 3395 mRNA 0.45 2 34446356 34450230
XM_021568263.2 False 3362 mRNA 0.45 2 34446356 34450833
TU1650870 True 1515 lncRNA 0.39 4 34446375 34468485
Loading

Neighbor

gene id symbol gene type direction distance location
tpcn3 tpc1 coding downstream 15800 34413543 ~ 34430556 (-)
ttbk1a LOC106564797 coding downstream 48669 34348767 ~ 34397687 (-)
slc22a7a LOC106564980 coding downstream 101593 34331040 ~ 34344763 (-)
pex6 LOC106564799 coding downstream 176306 34254192 ~ 34270050 (-)
LOC110493774 LOC106564802 coding downstream 280234 34146075 ~ 34166122 (-)
LOC118940658 NA coding upstream 45787 34496620 ~ 34496669 (-)
tmem178 LOC106564792 coding upstream 140016 34589353 ~ 34605070 (-)
gemin6 gemin6 coding upstream 334704 34785537 ~ 34788361 (-)
LOC118940117 NA coding upstream 363520 34814353 ~ 34815153 (-)
LOC110493798 if4a3 coding upstream 511931 34962764 ~ 34970771 (-)
G1442172 NA non-coding downstream 20412 34424954 ~ 34425944 (-)
G1442151 NA non-coding downstream 78750 34367378 ~ 34367606 (-)
G1442136 NA non-coding downstream 90087 34356046 ~ 34356269 (-)
G1441845 NA non-coding downstream 127249 34318240 ~ 34319107 (-)
G1442188 NA non-coding upstream 9761 34460594 ~ 34465401 (-)
G1442194 LOC106564793 non-coding upstream 20948 34471781 ~ 34560447 (-)
G1442241 NA non-coding upstream 111738 34562571 ~ 34562802 (-)
G1442243 NA non-coding upstream 113431 34564264 ~ 34564704 (-)
G1442139 NA other downstream 85050 34360102 ~ 34361306 (-)
LOC110493763 LOC106564812 other downstream 1030003 33413110 ~ 33515866 (-)
G1440786 NA other downstream 1059828 33385937 ~ 33386528 (-)
G1440781 NA other downstream 1063637 33381901 ~ 33382719 (-)
G1440711 NA other downstream 1193977 33238621 ~ 33252379 (-)
G1442336 LOC106564790 other upstream 269594 34720427 ~ 34720792 (-)
G1442443 NA other upstream 453249 34904082 ~ 34904616 (-)
LOC110493800 LOC106564782 other upstream 609366 35023723 ~ 35061975 (-)
G1442932 rbbp9 other upstream 777921 35228754 ~ 35232154 (-)
LOC110495171 cssa12h2orf73 other upstream 1164871 35615229 ~ 35617995 (-)
G1442260 NA non-coding upstream 139133 34607618 ~ 34607860 (-)

Expression

pgap4(tmem246) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 8.
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pgap4(tmem246) Expression in each Bioproject

Bar chart with 21 bars.
pgap4(tmem246) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 300.
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Co-expression Network