LOC110493788 (LOC106564978)


Basic Information

Item Value
gene id LOC110493788
gene name LOC106564978
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 34580981 ~ 34583315 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021568271.2
GACTATGGTCTGCACAAATACTAATAATACATTCTTTAGATAAATAATTTTGTTATGGGTCCTCTTAGGCCATCATTATCACATATATGCTTCTTCAGAAACCTCTTTCTCATCCTAATGTCTGCTTTAATCTCACTTCTCCTCTGGAACACTCTGAGACGCCCAACCTGTTCTGAGAGAAGCCCACTCCCAGCACCTGACCTCCTGCCACAAGACTACGCAGACGACCTGCCTGCCTGCTCAGCCATCATCAGAGGAGACCTGAAGGGCATCGACAAGGAGCAGCTCAGAAGACTTCTGAAAACAAAGAATAAGCCCAAGCTTCTGTCTGAGGCGTTCTACCACGACGTGACCCGAAACTGTAAAACGTACGTTACAGGCAGAGGGTTCATCATGATGCCCCTgagtgtggaggagagagacttcCCCATCGCCTACTCCATGGTGGTCCATGAGAAGATTGAGATGTTTGAGCGACTCCTGCGTGCCGTGTACACACCTCAGAATGTATATTGCGTGCATGTGGACCAGAAATCCTCAGAAGAATTCAGGACTGCAGTAAAGGCTATTGTGACTTGTTTTACCAATGTGTTTGTGGCAAGTAAGACAGAGAGTGTGGTTTACGCATCGTGGTCTCGAGTGCAGGCAGATCTAAACTGTATGAAGGACCTGTTGAAGTCACCTGTCCAGTGGAAGTACCTGCTCAATACCTGTGGAACAGATTTCCCCATTAAAACCAACGCAGAAATGGTTCAGTCACTCAAACTGCTCAACGGGAGGAACAGCATGGAGTCTGAGACAACTGTTGACTATAAGAAACACCGGTGGCAGTATCAGCACAATATAACCAATAACATAGTAGTCAGAACAGACGTTACGAAGAGCCCTCCTCCAATCAGCACCCCCATGTTTTCCGGAAATGCCTATTTCGTGGTCTCCAGGGACTTTGTCCATCACGTGTTTGACAGCCAGGAGGTTCGGGCCCTGCTGGAGTGGGAGAGGGACACCTACAGTCCTGATGAGCACCTGTGGGCCACTCTGCAGCGCATGCCCTCAGTGCCAGGGTCTAACCCTCCTCATGTCAAGTACCATGAATCAGACATGAACGCCATCGCTCGCATGGTAAAGTGGAGTTACCTGGAAGGAGATGTGAGGAAAGGAGCCCCATATCCACCCTGCTCCGGTGCCTCCaggagagctgtgtgtgtctatggggCTGGAGATCTACGGTGGCTCCTACAACACCACCACCTCATCGCTAACAAGTTTGACCCAGAGGTGGATGATGTAGCAGTTAGATGTCTGGAGTCCTACCTTCGTTTCAAAGCAACATATGGTTCATCTGGAAGTATCTGGAAAAAGCTACGAAATGAGAAAGGTTTGCACATACCGTAatgtacttttttattttatttgtgtttTGGTATAATTTTTAAGTGTGGTTGTTTTACCTATGGAATTGAACGCACTGATTGGAAGAGGCTATGGATAAGAGCACCTGCTAAGTTATACCAAAAATGTGCATTTTCATGTTGCATTTAGAATACACtctctaaacaacagttctatatttacaCAGTCTATATAATGTCAATAtaggttgtaaaaaaaaaaatcataattgggGTGTTCAAATATGTTGGGAATTTTGGCACAGGAGAGTCTGAAAAGAATGAAATACCCTAACCCTGTTCAATGTCAGCAGCAATTTCCGGTGTGAAATTAGACAGTCAGAGGATTTTCTTCTGAATAACTGGTCAGGGTATACCACGTTCCATTCAACTTCAGCCAACTTTGATGTAAAGGCTTGATAACACCTGTACTGACTACTTCTATACGTCATGCCCATTGTTGCTTGTCGATTGTTCACTAGAAAAGGCAATCACTTGGTTGCGGTCACTGAAAAGCTTGGATagctgtggattagtgaggaatgtgggcagaggtcaggtcagatgaagggAGAAGGAACTGTTTTATTACACACTTCATCTGCCGAGCAGCAAAGATGTTGTGTTTAGAGGTGCAACGAGGAGACTCTGACTAAAGGAGGGTATAAATAATGGTGCTGGTGGGAACATGTGTTTGTCTTTTCAGCTGTTTGACCCAGTGGGtaaataaacttggtttgagctttgacTAGTTTTTCACTCTGTTTGTCAGAACCTAACACCTTGTTACAATAGCCTAAATATATAATATGAAACAGTCTTGGAAGTGCAAGCCAACATAATTCATTATTTTATGAACTTGTTTAACTGCATTGATATGGCTAAaaatacagtgctttcggaaagtattccgaatAAATTGGatttattcagaccccttgact

Function

NR:

description
beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase 3-like

GO: NA

KEGG:

id description
K09662 GCNT3; N-acetylglucosaminyltransferase 3, mucin type

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021568271.2 True 2335 mRNA 0.44 1 34580981 34583315

Neighbor

gene id symbol gene type direction distance location
slc8a1a LOC106564793 coding upstream 22657 34510607 ~ 34560437 (+)
LOC110493785 mal coding upstream 112494 34460090 ~ 34468487 (+)
LOC110493783 LOC106564979 coding upstream 137949 34430887 ~ 34443032 (+)
LOC110493778 LOC106564798 coding upstream 263299 34290017 ~ 34317682 (+)
LOC110493777 NA coding upstream 326889 34241913 ~ 34254653 (+)
map4k3a LOC106564791 coding downstream 26498 34609813 ~ 34694633 (+)
LOC110493792 LOC106564790 coding downstream 112082 34695397 ~ 34769825 (+)
LOC110493791 NA coding downstream 193548 34776863 ~ 34780593 (+)
LOC110493794 srsf7 coding downstream 203975 34787290 ~ 34802322 (+)
LOC110493796 LOC106564787 coding downstream 261035 34844350 ~ 34903202 (+)
G1441990 NA non-coding upstream 11705 34568486 ~ 34569276 (+)
G1441989 NA non-coding upstream 18294 34562355 ~ 34562687 (+)
G1441929 NA non-coding upstream 123258 34453923 ~ 34457723 (+)
G1441906 NA non-coding upstream 164722 34415631 ~ 34416259 (+)
G1441995 NA non-coding downstream 6047 34589362 ~ 34590022 (+)
G1442004 NA non-coding downstream 23538 34606853 ~ 34607089 (+)
G1442005 NA non-coding downstream 24140 34607455 ~ 34607674 (+)
G1442041 NA non-coding downstream 138983 34722298 ~ 34722511 (+)
G1441315 NA other upstream 604506 33976193 ~ 33976475 (+)
G1440890 LOC106564813 other upstream 1056447 33524199 ~ 33524534 (+)
G1440162 NA other upstream 1624924 32951800 ~ 32956057 (+)
G1440066 NA other upstream 1783549 32797098 ~ 32797432 (+)
LOC110493802 LOC106564779 other downstream 585583 35120694 ~ 35184540 (+)
G1443221 NA other downstream 1090649 35673964 ~ 35744642 (+)
G1443251 NA other downstream 1163557 35746872 ~ 35751790 (+)
LOC118940407 NA other downstream 1655629 36234292 ~ 36242642 (+)
G1443844 NA other downstream 1747920 36331235 ~ 36375374 (+)

Expression


Co-expression Network