tmem178 (LOC106564792)


Basic Information

Item Value
gene id tmem178
gene name LOC106564792
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 34589353 ~ 34605070 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021568272.2
TTACTGACTGTGAAAGAGTAGGACAACCTTGACATTCCCCCACACACGCTGTATGTCGCCTCCGGGAGATGGTCATTTTCCTCTCCATGCGAATAGGAGGAGCCCTCAGTTTTACCCGACTGTGTCACTAACGAAGAGGACAAGCCCATGTgctgaggagagggaaagagagatagggGTGGTGTGGTTTCTGCAGGTAAACACTAGTGATCCCGAGCACAGAGAGGCAAGTGCGGAGTTTAGCCCACACCCAGCACGCTTGCGGACACCGTACGGATccacctgtgttgttgtatcttcCATTTTCAGCAACCCGCGGGTGGGAAGCAGCCAATGCCAATGCGCTCTCGACTGTGGACCATGTTCGCAGGTCAGAGGATGCGTAAAAATGCGTAGTAACTGGAATAGCAGGTGCTGGAAGAAGGGCGTCCGACTGTCAACACGTCTAAACTGTGCGCATAGCGCCGAGCGCTGATGTTCAAACCATGGAGAAACAAGCTCTTGCAACGGCTCTTAGCTTGTCCATGAGCGTTATCTCTTTACTCTTGTTGGTCACCGCTATCTTCACCGACCATTGGTACGAGACAGACACCAGAAGGCATAAGGAGAACTGCGACAAGTATGGGTCGGATTCTAACGACCAGAAAAACAGGGAGATGCCTATATACCACTTGCCTCTTGTGGACAACGGCAACTCCAAACGGAACGTGGCGCTTATGAAGCCGATTCACGtcgggagtagagaggaggaattACTTGAGAACTGGAGGGCGATACTGGGGATGGGGATTCTTGAGACGGAATGTGGGCGTCCGTTGTTCTCCACATATTCTGGACTCTGGAGAAAATGCTACTTTCAAGGCATGGACCGGGATATCGATAAACTCATATCAAAGGGTATTGCGGACCGATGCACAACTGTCAAGTACCATTTCTCTCAGCCTATTCGGCTTCGAAACATCCCGCTCAACCTGACGAGAACCATTCAGCAAGATGAATGGCATCTCTTACatcTGCGGCGAATCACGGCGGGGTTCCTTGGGATGGCGGCCGCCGTTTTGCTGTGTGGCAGCATTGTGGCCACAGTGGGCTTCTTTTGGGAGGAGAGCCTCACCCAGCACGTCTCCGGCCTGCTCTTCCTCATGGCAGGGATCTTCTGCACCATCTCCTTGTGCACCTACGCCGCCAGCGTCTCCTACGACCTCTCCCGGAACCCACCCTTCATCTATGGACTGCCCGGCGACGTGGACCATGGTTACGGCTGGTCCATCTTCTGCGCCTGGGTCAGCCTGGGACTTACCGTGGCATCGGGCTGCCTCTGCACCACCTACCCCTTCTTCAGCCAAACCAAGGCCCTGCACTCCAAAACCGCCCGGGAGTCCTCGGTATGAGCGTTATGAGCAGTGTGAGAGAATTGTGCGCCCCCTGTATATTTGGAGGATGAATTGTTGGTGTGGACATTTTGTTGCTGACTGAAGACCAATATAAAAGGAGGTGTTTTATTTGTACGAAACCAGAGATGAAACATAGTTTCCACAGTGAGATATGGGAATCTTGTTGGTCTTTTTTGTGGACTCTCGCCATCCTTTATCGAGGTGTTATGGAATGTGCAgctgttatgatgtgttatgtgtgtgtttgtatgtgcacCCAGGCAAACTGACACATACATATGGACCTACACATGtgtacacaagcacacacacagtctctctctctctctctccaagataTGGAGAACAATATGAGAGTGAATAACATGAAACGATGCAAATACCCACACAGGCATACCACACACATAAaacatgtgtgtatatattagcATATATACGAAAAAGGCAGAATTCTTATGGGTGGTTTGGTAAGATTGAATCAAATGGACATTGTATAAAACTACTAGTATCACTTTAAAAGCAAGAACCCTGCTTTTTTTCAGATGTAAGTGATATATTTTCTAAACTCTTAAGTACAAAACTCTAAACTGATAGCATGTGTAATGCCCCCTATCTTATGCTCAGAACCTTTGATTGTGCATTCATTGGGGTTTCACATCTTTGTTCTCCATTAAATACCATGAGCACATTTTGGTTAGTCACCAATACATCAGATTGGCTCACCATGTAGTCATTTTAACTACTATTTTCAGTTGTTGTTCTTTTCAATCACTTCCGTGCAATTTTCActagtatgtggtacattttcacgaCAAGCACAAAAATCAAAACAGATCATCACAATCGTCCCTGTTTCAAAACTCACATTTGCAATTGActgagaaaaacaaacaaacaaagtcacATGTTCACTGCACCAAatcacttttttgggggggttacaTATTCAATCTAAGTGTCTGCTTTTCAAAATGCAATATTCACTTTACTTTTGATATGAGTTTCTTGTCATTTGTTAACAATACAATTATCTATCGCTTAATCAAACTGCTCAAAACTGCTAACTACTGAGCCACAAGTATGTACTGCTTAGTTAACGTATATAGTTTGATAACTGTTGAACACTGTAAATGTCTATATTTTTTACCTAAATGTAGCAATTTGACATCAATTTATGTTGGAAGTTAAAAGCATATGGATGTGACTGTAAATACTACATCATCATTCTCCATCAGCCAGTGTGCTCCAATAGGACAAAAGGGAAAGAATCCCTATGTGCTACAATTTGGGATTATAGTGTTGTGCACAACGCACTGCTGAAACAACTTGGTTGTGCACTGCTGATACACATTTCAAAACTGTTCTTTTTGAAGTGCTGAATAGAAAGAATACTAGatggtaaatatatattttccatacAGTATTTGACTCTAACTTGacataccatttttttttaaacaatttgtaTCCAATGGCAGGTTGTGAGCACGTTGAGAAATATGTCAGTTTAACGGTTTCATCATCCGTATACAGCACACGCGTAGGACAAATCATCAGAAATAGGGGTATTGTAAAGCAGTTGGCTACTGTAAAAACGTAGTACGGGTGTTGTGTGCTATTTCTGCCGCATGCAACATTGTGAAAGATCACCCTTTTCTACAGGACTTGTCAACTAATACAGTATCGCCTGTCGCTCTGCTTGAAATTCGTCGGCTTACAATGTACAAATGAAATTCAGATGATGAGTGAAATATATTATTATACACAATACAGGTATTTCAACACTacactatcaaatcaaatttatttatatagcccttcgtacatcagctgatatctcaaagtgctgtacagaaacccagcctaaaaccccaaacagcaagcaatgcaggtgtagaagcacggtg
>XM_021568273.2
TTATTACTGACTGTGAAAGAGTAGGACAACCTTGACATTCCCCCACACACGCTGTATGTCGCCTCCGGGAGATGGTCATTTTCCTCTCCATGCGAATAGGAGGAGCCCTCAGTTTTACCCGACTGTGTCACTAACGAAGAGGACAAGCCCATGTgctgaggagagggaaagagagatagggGTGGTGTGGTTTCTGCAGGTAAACACTAGTGATCCCGAGCACAGAGAGGCAAGTGCGGAGTTTAGCCCACACCCAGCACGCTTGCGGACACCGTACGGATccacctgtgttgttgtatcttcCATTTTCAGCAACCCGCGGGTGGGAAGCAGCCAATGCCAATGCGCTCTCGACTGTGGACCATGTTCGCAGGTCAGAGGATGCGTAAAAATGCGTAGTAACTGGAATAGCAGGTGCTGGAAGAAGGGCGTCCGACTGTCAACACGTCTAAACTGTGCGCATAGCGCCGAGCGCTGATGTTCAAACCATGGAGAAACAAGCTCTTGCAACGGCTCTTAGCTTGTCCATGAGCGTTATCTCTTTACTCTTGTTGGTCACCGCTATCTTCACCGACCATTGGTACGAGACAGACACCAGAAGGCATAAGGAGAACTGCGACAAGTATGGGTCGGATTCTAACGACCAGAAAAACAGGGAGATGCCTATATACCACTTGCCTCTTGTGGACAACGGCAACTCCAAACGGAACGTGGCGCTTATGAAGCCGATTCACGtcgggagtagagaggaggaattACTTGAGAACTGGAGGGCGATACTGGGGATGGGGATTCTTGAGACGGAATGTGGGCGTCCGTTGTTCTCCACATATTCTGGACTCTGGAGAAAATGCTACTTTCAAGGCATGGACCGGGATATCGATAAACTCATATCAAAGGatcTGCGGCGAATCACGGCGGGGTTCCTTGGGATGGCGGCCGCCGTTTTGCTGTGTGGCAGCATTGTGGCCACAGTGGGCTTCTTTTGGGAGGAGAGCCTCACCCAGCACGTCTCCGGCCTGCTCTTCCTCATGGCAGGGATCTTCTGCACCATCTCCTTGTGCACCTACGCCGCCAGCGTCTCCTACGACCTCTCCCGGAACCCACCCTTCATCTATGGACTGCCCGGCGACGTGGACCATGGTTACGGCTGGTCCATCTTCTGCGCCTGGGTCAGCCTGGGACTTACCGTGGCATCGGGCTGCCTCTGCACCACCTACCCCTTCTTCAGCCAAACCAAGGCCCTGCACTCCAAAACCGCCCGGGAGTCCTCGGTATGAGCGTTATGAGCAGTGTGAGAGAATTGTGCGCCCCCTGTATATTTGGAGGATGAATTGTTGGTGTGGACATTTTGTTGCTGACTGAAGACCAATATAAAAGGAGGTGTTTTATTTGTACGAAACCAGAGATGAAACATAGTTTCCACAGTGAGATATGGGAATCTTGTTGGTCTTTTTTGTGGACTCTCGCCATCCTTTATCGAGGTGTTATGGAATGTGCAgctgttatgatgtgttatgtgtgtgtttgtatgtgcacCCAGGCAAACTGACACATACATATGGACCTACACATGtgtacacaagcacacacacagtctctctctctctctctccaagataTGGAGAACAATATGAGAGTGAATAACATGAAACGATGCAAATACCCACACAGGCATACCACACACATAAaacatgtgtgtatatattagcATATATACGAAAAAGGCAGAATTCTTATGGGTGGTTTGGTAAGATTGAATCAAATGGACATTGTATAAAACTACTAGTATCACTTTAAAAGCAAGAACCCTGCTTTTTTTCAGATGTAAGTGATATATTTTCTAAACTCTTAAGTACAAAACTCTAAACTGATAGCATGTGTAATGCCCCCTATCTTATGCTCAGAACCTTTGATTGTGCATTCATTGGGGTTTCACATCTTTGTTCTCCATTAAATACCATGAGCACATTTTGGTTAGTCACCAATACATCAGATTGGCTCACCATGTAGTCATTTTAACTACTATTTTCAGTTGTTGTTCTTTTCAATCACTTCCGTGCAATTTTCActagtatgtggtacattttcacgaCAAGCACAAAAATCAAAACAGATCATCACAATCGTCCCTGTTTCAAAACTCACATTTGCAATTGActgagaaaaacaaacaaacaaagtcacATGTTCACTGCACCAAatcacttttttgggggggttacaTATTCAATCTAAGTGTCTGCTTTTCAAAATGCAATATTCACTTTACTTTTGATATGAGTTTCTTGTCATTTGTTAACAATACAATTATCTATCGCTTAATCAAACTGCTCAAAACTGCTAACTACTGAGCCACAAGTATGTACTGCTTAGTTAACGTATATAGTTTGATAACTGTTGAACACTGTAAATGTCTATATTTTTTACCTAAATGTAGCAATTTGACATCAATTTATGTTGGAAGTTAAAAGCATATGGATGTGACTGTAAATACTACATCATCATTCTCCATCAGCCAGTGTGCTCCAATAGGACAAAAGGGAAAGAATCCCTATGTGCTACAATTTGGGATTATAGTGTTGTGCACAACGCACTGCTGAAACAACTTGGTTGTGCACTGCTGATACACATTTCAAAACTGTTCTTTTTGAAGTGCTGAATAGAAAGAATACTAGatggtaaatatatattttccatacAGTATTTGACTCTAACTTGacataccatttttttttaaacaatttgtaTCCAATGGCAGGTTGTGAGCACGTTGAGAAATATGTCAGTTTAACGGTTTCATCATCCGTATACAGCACACGCGTAGGACAAATCATCAGAAATAGGGGTATTGTAAAGCAGTTGGCTACTGTAAAAACGTAGTACGGGTGTTGTGTGCTATTTCTGCCGCATGCAACATTGTGAAAGATCACCCTTTTCTACAGGACTTGTCAACTAATACAGTATCGCCTGTCGCTCTGCTTGAAATTCGTCGGCTTACAATGTACAAATGAAATTCAGATGATGAGTGAAATATATTATTATACACAATACAGGTATTTCAACACTacactatcaaatcaaatttatttatatagcccttcgtacatcagctgatatctcaaagtgctgtacagaaacccagcctaaaaccccaaacagcaagcaatgcaggtgtagaagcacggtg
>TU1650929
CACTGCTGATACACATTTCAAAACTGTTCTTTTTGAAGTGCTGAATAGAAAGAATACTAGatggtaaatatatattttccatacAGTATTTGACTCTAACTTGacataccatttttttttaaacaatttgtaTCCAATGGCAGGTTGTGAGCACGTTGAGAAATATGTCAGTTTAACGGTTTCATCATCCGTATACAGCACACGCGTAGGACAAATCATCAGAAATAGGGGTATTGTAAAGCAGTTGGCTACTGTAAAAACGTAGTACGGGTGTTGTGTGCTATTTCTGCCGCATGCAACATTGTGAAAGATCACCCTTTTCTACAGGACTTGTCAACTAATACAGTATCGCCTGTCGCTCTGCTTGAAATTCGTCGGCTTACAATGTACAAATGAAATTCAGATGATGAGTGAAATATATTATTATACACAATACAGGTATTTCAACACTacactatcaaatcaaatttatttatatagcccttcgtacatcagctgatatctcaaagtgctgtacagaaacccagcctaaaaccccaaacagcaagcaatgcaggtgtagaagcacggtggctaggaaaaactcccatgaaaggccaaaacctaggaagaaacctagagaggaaccaggctatgtggggtggccagtcctcttctggctgtgccgggtggagattataacagaacatggccaagatgttcaaatgttcataaatgaccagcatggttgaataataataaggcagaacagttgaaactggagcagcagcacggtcaggtggactggggacagcaaggagtcatcatgtcaggtagtcctggggcatggtcatagggctcaggtcctccgagagagagaaagaaagagagaaggagagtattagagaacgcacacttagattcacacaggacaccgattaggacaggagaagtactccagatataacaaactgaccctagccccccgacacataaactactgcagcataaatactggaggctgagacaggaggggtcaggagacactgtggccccatccgaggacacccccggacagggccaaacaggaaggatatatcATCAGGAAGGACTATCATTCCAAATGGTAGCACACAGAGTGACTCTTTCCATTTGGTCCTATTGGAGCACACTGGCTGATGGAGAATGGTGTAGTATTTACAGTCACATTACAGtcatataaaaaaataaaggtaATATTGCATTTTGAAAAGCAGGTACTTAGATTGACTATATATCCAAATTGAAAGAGTGATTTGATGCAGTAACTTTGTGAATTTGTTTGTTGTATccagtcaattgaaaatgtgcttagagTTTTGAAACATGAGCCATTTTGATGATCTGTTTAGATTTTTGTGCttgttgtgaaaatgtaccacatacctGTAAAAATTGCACCCAAAGAGattgaaaaaaatgtaatccacaGCCTATGACATTCCGACGGATTCTATTGGTAATTTTAGTTGTggcaatcaaattgtattttttttttagtgAACCCATTAACCAGTCCCTTCCCAAACAGATAAGGCATAATCACTAATAATTTCAACATGTGTGCCAGACTGTGAGAAGAATACTGACAATGATAGACGAAGGACTACAGGGATTGTTGCTTACAAAGTTGAGGAAAGTCATTTTTACGCTCGTGGACACAAATGGTGCACGATTCAACATTGGAATGTGAAAACAGTAGAAACTGGATGAGATAATGTTGACACACCGCTTGAATGGATGTAAGACTTTTGTGTTGGAACTTCATCACACATGTTCTGAGCAGCCAACAGTGAGGGGTGGGCCCTGAAAGTTACATGCTGCCCCATGGAATGGCCAGCTTTCGCAACGACTCAATCTGACCTGGAAGACTTGTAGGGACCTTGATTGGCTTGTGGGGACATTAAATGGCTTGTGTGGACCTTGCAGGTTATGTATGTACAACTCAGCATGCTGTGTCAGAAGCAGAGCAGCAATTCTGAGATGGTACATAGAGCTTCAAGTCTTCTATATTGACATTTAAATCGAGCTGTAAATAAAACATGATCAA
>TU1650930
CAAAGAGattgaaaaaaatgtaatccacaGCCTATGACATTCCGACGGATTCTATTGGTAATTTTAGTTGTggcaatcaaattgtattttttttttagtgAACCCATTAACCAGTCCCTTCCCAAACAGATAAGGCATAATCACTAATAATTTCAACATGTGTGCCAGACTGTGAGAAGAATACTGACAATGATAGACGAAGGACTACAGGGATTGTTGCTTACAAAGTTGAGGAAAGTCATTTTTACGCTCGTGGACACAAATGGTGCACGATTCAACATTGGAATGTGAAAACAGTAGAAACTGGATGAGATAATGTTGACACACCGCTTGAATGGATGTAAGACTTTTGTGTTGGAACTTCATCACACATGTTCTGAGCAGCCAACAGTGAGGGGTGGGCCCTGAAAGTTACATGCTGCCCCATGGAATGGCCAGCTTTCGCAACGACTCAATCTGACCTGGAAGACTTGTAGGGACCTTGATTGGCTTGTGGGGACATTAAATGGCTTGTGTGGACCTTGCAGGTTATGTATGTACAACTCAGCATGCTGTGTCAGAAGCAGAGCAGCAATTCTGAGATGGTACATAGAGCTTCAAGTCTTCTATATTGACATTTAAATCGAGCTGTAAATAAAACATGATCAA
>TU1650931
TATCCAAATTGAAAGAGTGATTTGATGCAGTAACTTTGTGAATTTGTTTGTTGTATccagtcaattgaaaatgtgcttagagTTTTGAAACATGAGCCATTTTGATGATCTGTTTAGATTTTTGTGCttgttgtgaaaatgtaccacatacctGTAAAAATTGCACCCAAAGAGattgaaaaaaatgtaatccacaGCCTATGACATTCCGACGGATTCTATTGGTAATTTTAGTTGTggcaatcaaattgtattttttttttagtgAACCCATTAACCAGTCCCTTCCCAAACAGATAAGGCATAATCACTAATAATTTCAACATGTGTGCCAGACTGTGAGAAGAATACTGACAATGATAGACGAAGGACTACAGGGATTGTTGCTTACAAAGTTGAGGAAAGTCATTTTTACGCTCGTGGACACAAATGGTGCACGATTCAACATTGGAATGTGAAAACAGTAGAAACTGGATGAGATAATGTTGACACACCGCTTGAATGGATGTAAGACTTTTGTGTTGGAACTTCATCACACATGTTCTGAGCAGCCAACAGTGAGGGGTGGGCCCTGAAAGTTACATGCTGCCCCATGGAATGGCCAGCTTTCGCAACGACTCAATCTGACCTGGAAGACTTGTAGGGACCTTGATTGGCTTGTGGGGACATTAAATGGCTTGTGTGGACCTTGCAGGTTATGTATGTACAACTCAGCATGCTGTGTCAGAAGCAGAGCAGCAATTCTGAGATGGTACATAGAGCTTCAAGTCTTCTATATTGACATTTAAATCGAGCTGTAAATAAAACATGATCAA

Function

NR:

description
PREDICTED: transmembrane protein 178A

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021568272.2 False 3301 mRNA 0.44 4 34590849 34605067
XM_021568273.2 False 3190 mRNA 0.44 3 34590849 34605070
TU1650929 False 2068 lncRNA 0.41 1 34589353 34591420
TU1650930 False 648 lncRNA 0.41 1 34589353 34590000
TU1650931 True 815 lncRNA 0.39 1 34589353 34590167
Loading

Neighbor

gene id symbol gene type direction distance location
LOC118940658 NA coding downstream 94180 34496620 ~ 34496669 (-)
pgap4 tmem246 coding downstream 140016 34446356 ~ 34468485 (-)
tpcn3 tpc1 coding downstream 160293 34413543 ~ 34430556 (-)
ttbk1a LOC106564797 coding downstream 193162 34348767 ~ 34397687 (-)
slc22a7a LOC106564980 coding downstream 246086 34331040 ~ 34344763 (-)
gemin6 gemin6 coding upstream 180467 34785537 ~ 34788361 (-)
LOC118940117 NA coding upstream 209283 34814353 ~ 34815153 (-)
LOC110493798 if4a3 coding upstream 357694 34962764 ~ 34970771 (-)
LOC118940673 NA coding upstream 360196 34965266 ~ 34965392 (-)
LOC118940674 NA coding upstream 361139 34966209 ~ 34966342 (-)
G1442243 NA non-coding downstream 26145 34564264 ~ 34564704 (-)
G1442241 NA non-coding downstream 28047 34562571 ~ 34562802 (-)
G1442194 LOC106564793 non-coding downstream 30402 34471781 ~ 34560447 (-)
G1442188 NA non-coding downstream 125448 34460594 ~ 34465401 (-)
G1442260 NA non-coding upstream 2548 34607618 ~ 34607860 (-)
G1442283 NA non-coding upstream 38754 34643824 ~ 34714014 (-)
G1442291 NA non-coding upstream 48870 34653940 ~ 34654599 (-)
G1442300 NA non-coding upstream 87793 34692863 ~ 34695051 (-)
G1442333 NA non-coding upstream 110249 34715319 ~ 34715556 (-)
G1442139 NA other downstream 229543 34360102 ~ 34361306 (-)
LOC110493763 LOC106564812 other downstream 1174496 33413110 ~ 33515866 (-)
G1440786 NA other downstream 1204321 33385937 ~ 33386528 (-)
G1440781 NA other downstream 1208130 33381901 ~ 33382719 (-)
G1440711 NA other downstream 1338470 33238621 ~ 33252379 (-)
G1442336 LOC106564790 other upstream 115357 34720427 ~ 34720792 (-)
G1442443 NA other upstream 299012 34904082 ~ 34904616 (-)
LOC110493800 LOC106564782 other upstream 455129 35023723 ~ 35061975 (-)
G1442932 rbbp9 other upstream 623684 35228754 ~ 35232154 (-)
LOC110495171 cssa12h2orf73 other upstream 1010634 35615229 ~ 35617995 (-)

Expression

tmem178(LOC106564792) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 25.
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tmem178(LOC106564792) Expression in each Bioproject

Bar chart with 21 bars.
tmem178(LOC106564792) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 200.
End of interactive chart.

Co-expression Network