LOC110493791


Basic Information

Item Value
gene id LOC110493791
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 34776863 ~ 34780593 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036949780.1
TTAGTGAAGCAAATTTATCTAAACTGATTACAGAGATGAAAAAGTTCGGACTGCAAAATCGTGAGTATGCCATGGCTGTCAGGCTCACCAAAGATGAGTGCCAGACTGGAGAGTTTGATGTCAACGTTGAACCAGAGGTGGTCAAGGCGGCACTTACTGCCGGACAAATCTACAAAGGAGACAAGATCATCGCAGCCATACCGTATAATGGCTACCACGCAGAGTATCGTCTCCTGAGTATTACTACCCAGGAAATGGGCTACCCCATATTACACCTGACCAATAACAACAAGGACTGTATAATCTTCTTTACCACATTCTCTCCCTGCCTGGAGTCCTGTATGAAGGAAAGAGGAGGCCACAGCATTATCAATGACCTTGATAGGGCCTTTCATACTAGAGACCTAAACTCTAAGGCCTTTGTGTTCGAGAAAGTCTGGCAACCTAAGTGGGGTGGGGCAAAAACCAATCCCCCAAGGCAAAATGTACTAAACTCCTTCAATACAATACATAAGAAAATCCCCCTATATCGCTGTACACACAAAAAGTGTTATTATTGCAATGAGATGAACACAGGTCACTGTTTGGAGGGCTACAGTGGCTGAGTGCACTCCTTCAAGTCCAGCTGAGCCAATGAAGCCTCCTGTATCTGTAGAGGACtgtcaacctctctctcccttcatccctctctctgtctctcactgtccctTTTTGCCCTTTCCTCAGTATCTCTGTCCCTccttgggagaatctcaattggttTTGCTCGACTCCTCgcgtcctctcctccatcctctcctcacctccttttgaaaaaggtcaaaggtaatcaAATAGAGGAGGAAAGGAAACACGCAAACAAATGTGCTTGTATGAAATGACTCCTTCACCAACACGTAATCAGGCAAATTACATTTACAAAGGAGTAATCCCCCAATACATGTGTTAAGTGGTCAAAATAACTGTAGCTGGTTGCACTTGACATTTTATAGAGAGATAAGTATTGTATCGTTTTTTTAAATGTGGGCATGCTTTTCTTAGAGAAACAATAGCTGATTCAAAGGGGGTGTGGCAGATTTTAAAACACTTTCACGTTTCCCGCTGTGAGGATACATTTGTGCTCAGGCTATCGAGGAGAGGAGGACCGCTAAACAATGAGACAAGAATAACACAATCTTGTCATATTTTAACAAAGTTATGACATTCATGACAGTAACCCAAAGAGATGGTAACACATGTTTGTAACTGTGTATTTTGGCATAGTACTAGTTTATTATTGGGTTAACATTAAATAGTCTGTAACTGTATCCTATACAGTATTTATATCAATGCAAGGTTATCAGAACAATAAGATGCATTGAAAGACTTTAAGCTACAGTATGACTGCAGTTGAGGCTTATCATCATGGGGCACTATGTTATACTTTATTGGCTGTGACATTACATAAAACACTTCTTCTCCATGTCAAGTGCCCATTCTAAATTGACCCCAACATCTGTGAAGTTGTAGAGCTCTGGAGGACTACTTAGTTATAACACACAATGTAATACTGTAGCTCAATGTGTGAAGATGAAATTCCCTTATGTATTGTTGgacggtatccagattttcatatcgtcatactggtatatttaagcaataaggcacgagggggtgtggtatatggccaacattccacggctaagggctgttcttcagCACGACGCATTGCGGAGAGTATGGACACAACCCCCGAtgtgccttattgttattataatctggttatcaacgtaattagaacagtataaataaatgttttgtcata

Function

NR:

description
uncharacterized protein LOC110493791 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036949780.1 True 1804 mRNA 0.41 2 34776863 34780593

Neighbor

gene id symbol gene type direction distance location
LOC110493792 LOC106564790 coding upstream 7038 34695397 ~ 34769825 (+)
map4k3a LOC106564791 coding upstream 82230 34609813 ~ 34694633 (+)
LOC110493788 LOC106564978 coding upstream 193548 34580981 ~ 34583315 (+)
slc8a1a LOC106564793 coding upstream 218539 34510607 ~ 34560437 (+)
LOC110493785 mal coding upstream 308376 34460090 ~ 34468487 (+)
LOC110493794 srsf7 coding downstream 6697 34787290 ~ 34802322 (+)
LOC110493796 LOC106564787 coding downstream 63757 34844350 ~ 34903202 (+)
LOC110493797 LOC106564786 coding downstream 143089 34923682 ~ 34948213 (+)
LOC110493801 LOC106564780 coding downstream 341956 35122549 ~ 35132583 (+)
LOC110493802 LOC106564779 coding downstream 359003 35120694 ~ 35184540 (+)
G1442041 NA non-coding upstream 54352 34722298 ~ 34722511 (+)
G1442005 NA non-coding upstream 169189 34607455 ~ 34607674 (+)
G1442004 NA non-coding upstream 169774 34606853 ~ 34607089 (+)
G1441995 NA non-coding upstream 186841 34589362 ~ 34590022 (+)
G1442086 NA non-coding downstream 61981 34842574 ~ 34842788 (+)
G1442446 NA non-coding downstream 126656 34907249 ~ 34907477 (+)
G1442447 NA non-coding downstream 126900 34907493 ~ 34907720 (+)
G1442518 NA non-coding downstream 236546 35017139 ~ 35017372 (+)
LOC110493778 LOC106564798 other upstream 474254 34290017 ~ 34317682 (+)
G1441315 NA other upstream 800388 33976193 ~ 33976475 (+)
G1440890 LOC106564813 other upstream 1252329 33524199 ~ 33524534 (+)
G1440162 NA other upstream 1820806 32951800 ~ 32956057 (+)
G1440066 NA other upstream 1979431 32797098 ~ 32797432 (+)
G1443221 NA other downstream 893371 35673964 ~ 35744642 (+)
G1443251 NA other downstream 966279 35746872 ~ 35751790 (+)
LOC118940407 NA other downstream 1458351 36234292 ~ 36242642 (+)
G1443844 NA other downstream 1550642 36331235 ~ 36375374 (+)

Expression


Co-expression Network