LOC110493800 (LOC106564782)


Basic Information

Item Value
gene id LOC110493800
gene name LOC106564782
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 35023723 ~ 35061975 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021568292.2
AGACAAACATTTGACGCGGATGTAGAGAGTGTGTAACCTGTAAAGATAGCACCACCTCCCGATCATTTTGTTAGGCTGTGATACCCTGGTAATTTGTACATACATTTACCGATTTCGGGGAGAAGTTACTTCTTCAGATTCACCATCACTTCTGACGGGACCCTCCGGAGGATAATAATCAATTGAGTATTGATACACACCCAACTAAAAAGTAATTTTACAGGGACGTTAAAATGCTACGGATTTACTTGTGCTTGAGTGTTGTTGTCAACGTGGCCGTCTCGCAGGAAGCTGAGGAACCCATCTCATACACGTGTACAGATGGCTATACATTTGACATGGAACGACAAGAATGCAAAGACATCAACGAGTGTACCACGGTCACCGACGCCTGCAAGGGCGGCATGAGGTGCATCAATCATTTCGGAGGCTACTTCTGCCTGCCCCAGAATGCCCAGATCATCGTTAGTAATGGTGACGACGAGCCCACCGTGGCCCCTCTGGTGGAGGAACAGCCTCCTCTGGCACCCGCCCCTGCTTTGCCTGTCCAACGGGTCATCCAGAGCTCTTTCCAAAGCCAGGGCACCATGCAGTGTGCTGCAGGGTTCGTGGTGGACGACCTCAACTACTGCCGTGATGTGAACGAGTGTGAGGGGAGCAATCCCTGTCAACACCAGTGCTACAACATCATGGGCTCCTACATCTGCCAGTGTGAGCAGGGTTATGAGCTAGCCTCCAACCAAGCCTCCTGCCAAGATATTGATGAATGCGCCTTCTCGAGTTACATGTGCCAGTGGCAGTGTGTGAATCAGCCCGGAGGGTATGTCTGTACCTGTCCCGAAGGATACCAGCTCCAAGGCAACCGAATGTGCCAAGACATAGATGAGTGTGAAACAGGAAACAACTGCCGCGAGGACGAGATGTGTTGGAACTACTTTGGCGGTTTCCGCTGCTACCCCAGGAACCCTTGCCACGAGCCCTATGTGAAGACAGGAGAGGGGCGTTGCAGCTGCCAGTCGCTCACAATTTGCCGAGGCCTGCCGCCGTCCATCGTCTACAAGTACATGAGCATCTCGTCGGAGCGCTCCGTCCCAGCCGACATCTTCCAGATCCAGGCCACGAGCGTCTACCCTAACATGCACAACACCTTCAGGGTCAAGTCTGGCAACGAGGGAGGAGAGTTCATCCTCAGGCGCTCCAGCAACGTCAGTGCCATGCTGGTGATGACCAAGCCGCTAACCGGACCGCGGGAGCATGTGGTTGACCTGGAGATGGTCACACACAACAATGTCCTCAACTACCGCTCCAGCTCTCTGCTCCGGCTCACCATCATCGTGGGACCCTATGCCTTCTAAGTTCCAGTTACAAATTGCTCTTAGGCACAGATCTTAAATCAGTTTACCCGTCCCCATATCTCATATTATCCATTAGAGGATAAAAGGCAAAACTGGCCTTAGATCAGTGCCTAGGGGCACTTTCATCCTACTCAGCCCTCTTACTCCCTCCTAGACCATCACAAGGCCTAACACTCTCTGTACTGCTTGGATCTAATAGAGATATCCACATACTCCCTGCAAGGGTTTCCCATTCATGGTCCTTGTCCTGTGTTGGCTAGTTTTCATTCAAATGGATGGCTGTATAAATTGGGATTGAATGTATATTGTCTGATCTGCTGGTTGAGCACTGGACTGGGTGAAATTGTTTTGTTTTAGCTCAAAGCGTGTAGTCCTTTCTTGGAGATGGAACCATTGGTTAATTGCAGTGAAAACCAACACCCACACATAGCACATACTGGAGGAGCAGGAGGGTGAAATAGCCAGGCCACGATATAGTCACTTTATGCATCACTGGCTAATGATAACATTGTAAGAGCAAAACGTGACTTAAACTGAACACAACTCTTTCTTACTCATCCTTTGCTAAACGTACGTGTTGCACTGTAGCAGGAGAATGAGTTCTCGTCACATTTGAAATCGTTGTGAAATCTCTCATTAGTCTAGTCAAGATGTGTTTTCCTGCAGAGAAATTACCCCGTGTTTGAAATCACACTTGCCCTTTTTATCTTTTACCATAGTTGCCAAGTGAGGTTCACAATCGCATCATATCCCCTTTAAGATCACTGATTTTGTTTGTTTGGAGAGCTTTTCATTGATGTAGTTGAAAAGAAACGTACAGTAATGCAATGTGATGTCAACATAAATACCAATTGTCGTTGAAAAGAGACATATCTGTTTCAGTTATCTTGAAGAGAGATAATCTCTATTGGACGGACTATGAGCTTCTGACCAAACTACGcgagattttagttctgggttaaccgagattAGAAGAGAGACAAAGGCACCTAAAACAGTCAAGCTTATTGGTGAAGTGTGATTTAATGGGTTACAAGTGTAGTGATTTGGTGAGGACTGTGATGGAACCGTTTGCAGTGTGTAGTAATCCAATGGCATCCTTAACGAATGGAAATGTATGATCACGTCAACCCTCATCGGAGAGTTGCTCGGCAACCTCTGTCCAATGGGAATAAAGCAATAATGCTTTTGGACGCAAAAGTGATATTTTCAGGAAATCATTGGCAGTGTTGTTTGGTCATATAGGCAGGGGAATTGTTGCTTAAcatgtctgtatgtgtgccaGAGTGCCTCTTGATCCTGCACAGAACTTCCAGTCAGCGATCTGCCACAAACAGTTAGTCAGGTCATTTCGACACAGAGTTCCTTTCATAAGGAGTCATTGAATCACAATTTGAGATTAACTCTGTTTTTTTAGTAGAGGATTTGACACCATGAgactttttaaaataaatataatgTTTGACAATCAACAAGGAAGCTCAATTGAATCAAAAGGTTCCCACTCCGAATGACATGCAATTTCAACTGTGTATGTACTATATATAGGTAGGTACAGTGTAAGTACAGTATTCCATATCTCTGTGGTTGGAACAGTCAATTTGAACAAATGTCTGTTTATAAAAACTGTTAAAAAGGTAACAGTTGAAGACCTACCATAAATAACAATGTGTACCTACACTGTGGTTGCAATGtctatataatatacctatataaTTACCATGTAGATACATAGTTCTGGCAACAATATTATGTGGAAACAAATGTGGTTACATTCCAATATGAAAATTATTTATTGGGGTGATaataaaatgtaattgaagaCTGAAAATTGCCAATATAAATGTATGTCTTATTTTATACGAAGGAAGTCCACGTGTAGCTCTAATATATAAAACATTCATGCGACTTAACAttgttatatatatttacacCAAGCACAAGTTTTTCACAGATTTTGAGAATATtcacttcttttttttcttttttaaaataaaatatacattt
>XM_036949785.1
tgtaaaaaatgctgCCCCAgtcacagctcaatccaaaattGCCTCCCCGTGAACTGAAAGAaaggctccttttgtagggctagcccctcccctcagaacaattaaccctaattaattaagcaattaactgTCAGACCTACATTTTCCattaactaaacatactaaagtatatacattgcaacatgtttatgaaacaatatcacaacataacagTTACAAaattacatcactactgacagtgtctttcaatatgcacatttacattaatgagccatttgggacaggcactacaaAGTCAGCCCAATTCCCTTTACTCGGGTCCTTatccagcatacccggaagctacagagatggagagaggaagagaacaaACAAACAACGCGGTCATCCATAACATCGATAAGGACGTTAAAATGCTACGGATTTACTTGTGCTTGAGTGTTGTTGTCAACGTGGCCGTCTCGCAGGAAGCTGAGGAACCCATCTCATACACGTGTACAGATGGCTATACATTTGACATGGAACGACAAGAATGCAAAGACATCAACGAGTGTACCACGGTCACCGACGCCTGCAAGGGCGGCATGAGGTGCATCAATCATTTCGGAGGCTACTTCTGCCTGCCCCAGAATGCCCAGATCATCGTTAGTAATGGTGACGACGAGCCCACCGTGGCCCCTCTGGTGGAGGAACAGCCTCCTCTGGCACCCGCCCCTGCTTTGCCTGTCCAACGGGTCATCCAGAGCTCTTTCCAAAGCCAGGGCACCATGCAGTGTGCTGCAGGGTTCGTGGTGGACGACCTCAACTACTGCCGTGATGTGAACGAGTGTGAGGGGAGCAATCCCTGTCAACACCAGTGCTACAACATCATGGGCTCCTACATCTGCCAGTGTGAGCAGGGTTATGAGCTAGCCTCCAACCAAGCCTCCTGCCAAGATATTGATGAATGCGCCTTCTCGAGTTACATGTGCCAGTGGCAGTGTGTGAATCAGCCCGGAGGGTATGTCTGTACCTGTCCCGAAGGATACCAGCTCCAAGGCAACCGAATGTGCCAAGACATAGATGAGTGTGAAACAGGAAACAACTGCCGCGAGGACGAGATGTGTTGGAACTACTTTGGCGGTTTCCGCTGCTACCCCAGGAACCCTTGCCACGAGCCCTATGTGAAGACAGGAGAGGGGCGTTGCAGCTGCCAGTCGCTCACAATTTGCCGAGGCCTGCCGCCGTCCATCGTCTACAAGTACATGAGCATCTCGTCGGAGCGCTCCGTCCCAGCCGACATCTTCCAGATCCAGGCCACGAGCGTCTACCCTAACATGCACAACACCTTCAGGGTCAAGTCTGGCAACGAGGGAGGAGAGTTCATCCTCAGGCGCTCCAGCAACGTCAGTGCCATGCTGGTGATGACCAAGCCGCTAACCGGACCGCGGGAGCATGTGGTTGACCTGGAGATGGTCACACACAACAATGTCCTCAACTACCGCTCCAGCTCTCTGCTCCGGCTCACCATCATCGTGGGACCCTATGCCTTCTAAGTTCCAGTTACAAATTGCTCTTAGGCACAGATCTTAAATCAGTTTACCCGTCCCCATATCTCATATTATCCATTAGAGGATAAAAGGCAAAACTGGCCTTAGATCAGTGCCTAGGGGCACTTTCATCCTACTCAGCCCTCTTACTCCCTCCTAGACCATCACAAGGCCTAACACTCTCTGTACTGCTTGGATCTAATAGAGATATCCACATACTCCCTGCAAGGGTTTCCCATTCATGGTCCTTGTCCTGTGTTGGCTAGTTTTCATTCAAATGGATGGCTGTATAAATTGGGATTGAATGTATATTGTCTGATCTGCTGGTTGAGCACTGGACTGGGTGAAATTGTTTTGTTTTAGCTCAAAGCGTGTAGTCCTTTCTTGGAGATGGAACCATTGGTTAATTGCAGTGAAAACCAACACCCACACATAGCACATACTGGAGGAGCAGGAGGGTGAAATAGCCAGGCCACGATATAGTCACTTTATGCATCACTGGCTAATGATAACATTGTAAGAGCAAAACGTGACTTAAACTGAACACAACTCTTTCTTACTCATCCTTTGCTAAACGTACGTGTTGCACTGTAGCAGGAGAATGAGTTCTCGTCACATTTGAAATCGTTGTGAAATCTCTCATTAGTCTAGTCAAGATGTGTTTTCCTGCAGAGAAATTACCCCGTGTTTGAAATCACACTTGCCCTTTTTATCTTTTACCATAGTTGCCAAGTGAGGTTCACAATCGCATCATATCCCCTTTAAGATCACTGATTTTGTTTGTTTGGAGAGCTTTTCATTGATGTAGTTGAAAAGAAACGTACAGTAATGCAATGTGATGTCAACATAAATACCAATTGTCGTTGAAAAGAGACATATCTGTTTCAGTTATCTTGAAGAGAGATAATCTCTATTGGACGGACTATGAGCTTCTGACCAAACTACGcgagattttagttctgggttaaccgagattAGAAGAGAGACAAAGGCACCTAAAACAGTCAAGCTTATTGGTGAAGTGTGATTTAATGGGTTACAAGTGTAGTGATTTGGTGAGGACTGTGATGGAACCGTTTGCAGTGTGTAGTAATCCAATGGCATCCTTAACGAATGGAAATGTATGATCACGTCAACCCTCATCGGAGAGTTGCTCGGCAACCTCTGTCCAATGGGAATAAAGCAATAATGCTTTTGGACGCAAAAGTGATATTTTCAGGAAATCATTGGCAGTGTTGTTTGGTCATATAGGCAGGGGAATTGTTGCTTAAcatgtctgtatgtgtgccaGAGTGCCTCTTGATCCTGCACAGAACTTCCAGTCAGCGATCTGCCACAAACAGTTAGTCAGGTCATTTCGACACAGAGTTCCTTTCATAAGGAGTCATTGAATCACAATTTGAGATTAACTCTGTTTTTTTAGTAGAGGATTTGACACCATGAgactttttaaaataaatataatgTTTGACAATCAACAAGGAAGCTCAATTGAATCAAAAGGTTCCCACTCCGAATGACATGCAATTTCAACTGTGTATGTACTATATATAGGTAGGTACAGTGTAAGTACAGTATTCCATATCTCTGTGGTTGGAACAGTCAATTTGAACAAATGTCTGTTTATAAAAACTGTTAAAAAGGTAACAGTTGAAGACCTACCATAAATAACAATGTGTACCTACACTGTGGTTGCAATGtctatataatatacctatataaTTACCATGTAGATACATAGTTCTGGCAACAATATTATGTGGAAACAAATGTGGTTACATTCCAATATGAAAATTATTTATTGGGGTGATaataaaatgtaattgaagaCTGAAAATTGCCAATATAAATGTATGTCTTATTTTATACGAAGGAAGTCCACGTGTAGCTCTAATATATAAAACATTCATGCGACTTAACAttgttatatatatttacacCAAGCACAAGTTTTTCACAGATTTTGAGAATATtcacttcttttttttcttttttaaaataaaatatacattt
>TU1651485
cggaagctacagagatggagagaggaagagaacaaACAAACAACGCGGTCATCCATAACATCGATAAGTAAAATACATATTGCCTATAttaaatatgaacattgacaagtgtgaaatgtatgtactaagacagaaaagttaacttgtgtgtcgacccacattgttaccTTATCTGATAAtggagcagggaggagtgatgaatgtgtgtgtgcgttaaagaaccaaatgctgcccgcggccagtgacggacttctacgtcacaGTCAcaaccaagaagactcgaggctgtagttGCCAAAGAttctttaacaaagtactgagtaaatggtctgaatagttatgtgaATGTAATATCTCTTcttttttttgtatacatttacaatatttctaaaaacctgtttttgctttgccattatggggtgttgtgtttagattgatgagggacaaaACAATGaatagattttagaataaggaaaaagtcaaggggtctgagtactttccgaatgcact
>TU1651483
tacaggcgaatgtgacaaatacaatttgatttgatttgattcttaaatggaagaggtttggaaccaccaagactcttcctagagctggctgcctggtcaaactgagcaatcgggggagaagggccttggtcagggaggtgaccaagaacctgatggtcactctgacagagttccaaagttcctctgtggagatgggagaaccttccaaaagcacaaccatgtctgcagcactccaacaatcaggccttcatgatagagtggtcagacggaagccgctcctcggtaaaaggtacatgacagcccacttggagtttgcgaaaaggcacctaaagactctcagaccatgagaaacaagattctctggtctgatgaaaccaagattgaactatttggcctgaatgccaagcgtcaagtctggaggaaacctggcatcatccctgcggtgaagcatggtggtggcagcatcatgctgtggggatgtttttcagctgctgggactgggagactagtcaggatcgagggaaagatgaacggagcaaagtacagagagatccttgacgaaaacctgccccagagcgctcaagacctcaaactggggcaaaaagttcaccttccagcaggacaacaaccctaagcacacagccaggacagcGCAGTAGTGGCTtcagacaagtctctgaatgtccttgagtggcccagcaagagcccggacttgaaccagatcgaacatctttggagagacctgaaaattactgtgcaacgacgctccccattcaacctgacagagcttaagaggatctgcagagaggaatgggagaaattagccaaaaacaggtgtgccaagcttgtagtgtcattgtcacgtagagtaggccagaaggctatactggaaaacctaacctctatcaaaataaaaaagatggcggagccgcaaaTGTTCTTCTAtgcaagggtgtttatttacaaagtgatttcaaaacaaaaacaacagtactgccatcaaacatataccttatggaacagctttataaaaaataaaaaataataaataatacaattttaaaaaaataaaaaaaaaataataataataataataataataataaaaatgtaaaaaatgctgCCCCAgtcacagctcaatccaaaattGCCTCCCCGTGAACTGAAAGAaaggctccttttgtagggctagcccctcccctcagaacaattaaccctaattaattaagcaattaactgTCAGACCTACATTTTCCattaactaaacatactaaagtatatacattgcaacatgtttatgaaacaatatcacaacataacagTTACAAaattacatcactactgacagtgtctttcaatatgcacatttacattaatgagccatttgggacaggcactacaaAGTCAGCCCAATTCCCTTTACTCGGGTCCTTatccagcatacccggaagctacagagatggagagaggaagagaacaaACAAACAACGCGGTCATCCATAACATCGATAAGTAAAATACATATTGCCTATAttaaatatgaacattgacaagtgtgaaatgtatgtactaagacagaaaagttaacttgtgtgtcgacccacattgttaccTTATCTGATAAtggagcagggaggagtgatgaatgtgtgtgtgcgttaaagaaccaaatgctgcccgcggccagtgacggacttctacgtcacaGTCAcaaccaagaagactcgaggctgtagttGCCAAAGAttctttaacaaagtactgagtaaatggtctg

Function

NR:

description
TC1-like transposase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021568292.2 False 3362 mRNA 0.44 9 35023723 35051782
XM_036949785.1 False 3542 mRNA 0.44 9 35023723 35060866
TU1651485 False 510 lncRNA 0.38 1 35060021 35060530
TU1651483 True 1777 TUCP 0.43 1 35060199 35061975
Loading

Neighbor

gene id symbol gene type direction distance location
LOC118940098 NA coding downstream 4645 35014063 ~ 35019078 (-)
LOC110493799 LOC106564784 coding downstream 15105 34976092 ~ 35008618 (-)
LOC110493798 if4a3 coding downstream 52952 34962764 ~ 34970771 (-)
LOC118940674 NA coding downstream 57381 34966209 ~ 34966342 (-)
LOC118940673 NA coding downstream 58331 34965266 ~ 34965392 (-)
LOC110493803 LOC106564778 coding upstream 122500 35183366 ~ 35199206 (-)
zgc:194981 LOC106564776 coding upstream 142682 35203548 ~ 35205645 (-)
LOC110493805 LOC106564776 coding upstream 158888 35219754 ~ 35227920 (-)
polr3f polr3f coding upstream 172458 35233324 ~ 35238873 (-)
LOC110493806 kat14 coding upstream 192381 35253247 ~ 35262462 (-)
G1442702 NA non-coding downstream 1240 35022182 ~ 35022483 (-)
G1442699 NA non-coding downstream 3845 35019650 ~ 35019878 (-)
G1442694 NA non-coding downstream 8327 35015188 ~ 35015396 (-)
G1442651 NA non-coding downstream 93983 34925548 ~ 34929740 (-)
G1442681 NA non-coding upstream 2280 35063146 ~ 35063719 (-)
G1442678 NA non-coding upstream 3627 35064493 ~ 35064986 (-)
G1442724 NA non-coding upstream 15825 35076691 ~ 35076892 (-)
G1442750 NA non-coding upstream 59439 35120305 ~ 35195288 (-)
G1442756 NA non-coding upstream 69306 35130172 ~ 35132425 (-)
G1442443 NA other downstream 119107 34904082 ~ 34904616 (-)
G1442336 LOC106564790 other downstream 302931 34720427 ~ 34720792 (-)
G1442139 NA other downstream 662417 34360102 ~ 34361306 (-)
LOC110493763 LOC106564812 other downstream 1607370 33413110 ~ 33515866 (-)
G1440786 NA other downstream 1637195 33385937 ~ 33386528 (-)
G1442932 rbbp9 other upstream 167888 35228754 ~ 35232154 (-)
LOC110495171 cssa12h2orf73 other upstream 554838 35615229 ~ 35617995 (-)
LOC110493173 slc29a1 other upstream 919115 35979898 ~ 36012831 (-)
LOC118940405 slc29a1 other upstream 1028418 36087429 ~ 36123409 (-)
G1443821 NA other upstream 1110004 36170870 ~ 36174051 (-)
G1442680 NA non-coding downstream 5060 35053865 ~ 35054961 (-)

Expression

LOC110493800(LOC106564782) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 50.
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LOC110493800(LOC106564782) Expression in each Bioproject

Bar chart with 21 bars.
LOC110493800(LOC106564782) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 600.
End of interactive chart.

Co-expression Network