LOC110493801 (LOC106564780)


Basic Information

Item Value
gene id LOC110493801
gene name LOC106564780
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 35122549 ~ 35132583 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021568293.2
aAACCGGAAGTCATTGTTTTATTACTACCAGCAGCAGGCAGTAAACGTTTAGAAAATTCGAATCATCTCAGCAAGAACAGTAGAGGGGCAAAGTCAACTCCGAGATCTCTGAGCTAGTAACGAACTCTATTTTCATTTCGAGACGATTTTAAAAGGGATGAAATGTCAGTCTCACTGTGTATACAGTGTCAGACACAAACCACTGTGTTTAGTAAGACCTGCAACAGTTGTTTCTTTAACCACCCAAAAGAGAAGAAGTTGTTACAAGCAATGAAGAAGTATGATTACGAATGGGGACACAATGATTGCGCCAACTATAATAATAGCTCTCAGATACTGACTTCCACAAAAGTATTGCTCTACAAATTACACACTCTAGGATTTGTTCCCCTTCTCCTGCTTGGAAAAAGGAGACGGGGAACAAAACATATCGATATGGATTCCTTTTGCCCTCACCCCCAAGTCATAAAAGAAACGGGCTCTATTGAAACATTGAGAAACATTTATTTAGGTCTTCTGAATGTCACACTCGGCACTGAGTCCCAATGTCAGTGCTCCCCAGTGTCTCCAGAGCCAGATGGGACCCCCGCACCAGCCGAGGTAGAGGGAACACCTACAACTATCGATCCAGTGGGAACCTCTGCATCGACAGAGCTACACAGAATACCCATCTCCATCCAATTGAACGTAATACCAACAGAAACGGGCATACCCAACACACTAATCAATCCAGTGGGAACCCCTACAGCTATCAATCCAGTGGGAACCCCTACAGCTATCAATCCAGTGGGAACCCCTACAGCTATCAATCCAGTGGGAACCCCTACAGCTATCAATCCAGTGGGAACCCCTACAACTATCAATCCAGTGGGAACCCCTACAGCTATAAATCCAGTGGGATTCCCTGCACCAACCAATCGAGACGGAATCCCCATATCTTTACAACTGAACCTAATCCCCACACCAACAGAGCCAGGCAAATCCTGCACACCAGCCATTCCAGTGGGAATCCCTACACCAACCAATCTAGTGGGAACTCTTACAGCAATTGATGCATCAGGAACCCCTGCACCAACTATGCCAGATGGAATTCCCACATCCATCAGCCTGAACAAAATCATCACACTAACTAAGCCAGGCAAACACTCCACATCAACCAAAACATTGGGAACCCCTTCACCAATTAATTCAGTGGGGACCCCTGCACCAGCCGAGCTAGACGGACTCCCCACACCAACAGACCCAGCCAAACCTTCCACACCAACCAAGCTAGATGGAATCCCCACATACATCTGCCTGAACGGAATCCCCACATCCATCTGCATGAACGGAACCCCCACACCAATACAGCCCAAAATCCCCAGACCAATACAGCCCAAAATCCCCAGACCAATACAGCCCAAAATCCCCTCACCAATAAAGCCAGGCAAACCCTCCACACAAAACAATCCAGTGGGAAGCCCTACACCAATGGATGAAACCTCTGACTCCTCTGAGCACCAGGACCAAGAAATGCAAAGGCCAAAAAGAAAAATGTGGAGAGATGGAGATCTAATCGAAGCTGAAGACAGTGCAACCACTCAAGCACAAAAGAGAATAAAAGCCACAGAAGAGTGGCTGAACATGGATACGGATAGGCCCACGGTGTCAAGACATGCAGAGGTAGACACTGAAGTGTTAGATCAGCTAGAAAAACACAAAGAAGAGTGTCTGAACATGGATACGGATAGGCCCACGGTGTCAAGACATGCAGAGGTAGACACTGAAGTATTAGATCAACTAGAAAAGAGCAGCATTGTACAAGCAACCAACAAGCAAACTTTGTGGGCTATAAACTGCTTCAAAGACTGGCTGGCAGAGAAACAGATGATAGTGGATTTTTCAACCATTGAGAAATCTGAAATGAATGTGCTCTTGCGAGATTTTTACTGTTCTGTTCGAAGGGGTAAAGGTGGGGAGTATTGTATCCCGAGCTATATCGGAATCCGGGCTGGCGTGAACAGATTCATTAACCTCCCTCCCCTTAGCAGAGCCTGGTGCTTGATGAAGGACAGTGAGTTTACCTCCTCTAATAATGTATTTATTGGGGTACTAAAGAAAATCAGACGAGAGGGCAGGGACAAAACTACCCATCCTAAGGTGATTAAAGCACAAGaccttgagattcttcaaaactCTCCTGTGCTAAGCCCCTACACACCAAGAGGGCTAGTCAACAAAGTGTGGTTTGATATCCAGTTACACTTTGGCCCCAGAGGAAAGGAGGGCAATAGGCGGCTAACGCCACAGTCGTTTGTAATAAAGTACGATGAAAACGGAGCAAAATATGCAACGATGACTTCCAGCGAGGAAAGACAGAACCATAAAGATGCAGAAGAGCAGAACTGGCAGAATCGCTGTGGAATCATGTTTCAGAACCCTGGTAGTCACCTCTGTCCAGTCGCCTCCTTGGAGAAGTATCTGAGCAAGATCCCATCAGATGCCACCGCCCTCTACCTCCATCCTAAGAAAATGGTCATCACCAGTGACAGAATATGGTATAGCCAGGAGCCAATGGGGTTCAATTACCTTTCATCAATGCTGCCCCGACTGTGCCAGGAGGCTGGTACATTGGAAAAGTACACAAACAACTGCTTACGATCTTTGCGCGAGATCATGTCTGTCAGCACACTGATAGTTCCTTGAAAAGTTATTGAAAACCTTCAATGGACAGAAAGAGATCAAATAGGCTCACTGAGTCAAGGCAGTGACACACTTCAGTTTTACTTCCTACCAGCGACATTGTTTTGGTCTTATACGCAAACGGAGAGCTTGCCAAGATATACAGTCCTCACCATATCTATATGGACTATGTATTTTGACACTGAGGCTAAGATTGACATTTTTTGCTCTATATTCCAGCATTTTGTATTTAAGATGAATGAGGCGACAGTCCAGAATTTAACCTTTTGAATTAAGATGATGTTTTAAGGTATAGATTTTGTTTTGCGCTGAGACTTCACTTTTCAGAATTGTAAAGCCTTTTAAGATTTAATTTCACCAACAAGTTTTACTCTACTGGAAACTGTTTAACCATAATAATCCATTTAGGAAATCTAAAGTttagggcgggggggggggggggaatcgcAGCAATCGCAGGATAATAGGGCGGATAGATTTTTGTatgtgtgaaatatatttttttggggtgACTGGAAGCAATTTGATGTGATACTTCCTAGATGTTTTTACATGTGTACACCACTTTGTAGACCATCTGTTGTGGCAAATGGTCATACAGCTGTTTTATCAAATTTAATTGTACCCTTCACATAGAAGTGATATTTCCCTTATTTACTAGATCTATTATTTAAAGGTTATGTACCAACTACCTAAAATTACCCGTATCCCCTTAAATTCAAGATTTTGAACTATGTATGCCTCTTTCTCAGAAAGAAATGGAACTTGCAAAACAATTTTGCAAGCTATAATGATAGTGCAGCAGAACCTGTTAGGAGTGCTTGAGAGTTAAGGTAGTAACAAGAAGTGTGGAAAGCCAGATGAGCCAAACATATGTTGCGGGAAGGGACAAAAGGCCCAAGAGACGTTGTAAACCATAGGGAACCAGGAGTAAGACCGCATCGAGAGAACATACGGGGTGAAACAACTTCATCTGAGGGCTGAGAGCATTTTGATGTCGAATATGAGTAATAACAAGTACATGTATCCTAAAGTCTGTAGGCATAGTGAACTTGATTACATTATAATGTTGGCCTACATGCATAATTGTAGCCCACTTTTCCTTCCCTgcactagggctgctgaatcaagtgcacctaccgctaACGGCGCAAAACAAATAGGAACGCAAGGCTTTATCAGAGTTTTTAAACCAAACTGTACTGTCTTGGGCTTtatcattgtttttgtttttttacagaaatgcttGGAGATCACGATCGACCTGTTGGTAGCAACTGTTGTAGCCTTTTATTTGCGAGGCACAAAGGTGCATCAATAGAAATAACTTGCCCCGCAATAGATTTACCGTTTctcagtatggtagggcaaaggCCTGCAAACTACTAAACCTGATAATCGTCCAAAAGTAGCACACTGATGAGAAGAATCTGTAGTAAAACCCGGACTCGAGGGTAAACTGTCTAACAAAATGAATAATTAGACATTCGAAACCACCTGTAACCATGAACAACATTTTGGAATGACCACACAAACTGTGAAATTATCATTCATGGGCTACAGGCAACCAACCATAACTTGAAGTTGAAAACCACAAATCAGAATTTATATATTCCAGTTGCTACTGGGAGGAGAATAACCATTACGCGTTGAACACACCGACAGTGtaattgcattttggtacaccagaattacattAATTCCCAATGAAACGCTGCGTTTGCGTTGCAGTGCAGTTTTGTTTATGAGAATGAATGAAATACCTGGAGTGATGAGTTTATAAAGCATGGATGAAACTTTTCTATCATCACCGAAGAACCCTTTAATAAAATGGCAGTGCTATTGCAAAGTAGGCTACAATTATGCATGTAGGCTAACATTATGTAAAATCTGAATGGCTATGCCTGCAGACTTCAGGATACATGTTTTACTGATTGCTATACAATACTGATCCATGCTTGCCGGCAATGGAGTGTCAGGAAATGTAGAAACGGAAGATCCAAGTTCAAGTGTAATTATCCATCTGGTTAGCTTTAGGCTTTTGCACTCAACATGGAAATATAATTGTTGTGATTTGAAGTTGTATTGAAGAATTTATTCATGTAACACACCGACAGTGTTATATTACGATGAGCTATAATATAATCACTAGGCCTATGCTTTGCATGCAGACTGTTAAAGAATGTGACAATGAGTAACAATGAATGTTGTCAGATCGATAAGCATTTAATTAATTACCTAAAGATTTGGATGTATCTCTGTGCACTTCCTGCAAAAGAAAGGTTGACACTAGAcattttgttttgctttttaTTATATAATTAAAACCAAAAACATATAAT
>XM_021568295.2
aAACCGGAAGTCATTGTTTTATTACTACCAGCAGCAGGCAGTAAACGTTTAGAAAATTCGAATCATCTCAGCAAGAACAGTAGAGGGGCAAAGTCAACTCCGAGATCTCTGAGCTAGTAACGAACTCTATTTTCATTTCGAGACGATTTTAAAAGGGATGAAATGTCAGTCTCACTGTGTATACAGTGTCAGACACAAACCACTGTGTTTAGTAAGACCTGCAACAGTTGTTTCTTTAACCACCCAAAAGAGAAGAAGTTGTTACAAGCAATGAAGAAGTATGATTACGAATGGGGACACAATGATTGCGCCAACTATAATAATAGCTCTCAGATACTGACTTCCACAAAAGTATTGCTCTACAAATTACACACTCTAGGATTTGTTCCCCTTCTCCTGCTTGGAAAAAGGAGACGGGGAACAAAACATATCGATATGGATTCCTTTTGCCCTCACCCCCAAGTCATAAAAGAAACGGGCTCTATTGAAACATTGAGAAACATTTATTTAGGTCTTCTGAATGTCACACTCGGCACTGAGTCCCAATGTCAGTGCTCCCCAGTGTCTCCAGAGCCAGATGGGACCCCCGCACCAGCCGAGGTAGAGGGAACACCTACAACTATCGATCCAGTGGGAACCTCTGCATCGACAGAGCTACACAGAATACCCATCTCCATCCAATTGAACGTAATACCAACAGAAACGGGCATACCCAACACACTAATCAATCCAGTGGGAACCCCTACAGCTATCAATCCAGTGGGAACCCCTACAGCTATCAATCCAGTGGGAACCCCTACAGCTATCAATCCAGTGGGAACCCCTACAGCTATCAATCCAGTGGGAACCCCTACAACTATCAATCCAGTGGGAACCCCTACAGCTATAAATCCAGTGGGATTCCCTGCACCAACCAATCGAGACGGAATCCCCATATCTTTACAACTGAACCTAATCCCCACACCAACAGAGCCAGGCAAATCCTGCACACCAGCCATTCCAGTGGGAATCCCTACACCAACCAATCTAGTGGGAACTCTTACAGCAATTGATGCATCAGGAACCCCTGCACCAACTATGCCAGATGGAATTCCCACATCCATCAGCCTGAACAAAATCATCACACTAACTAAGCCAGGCAAACACTCCACATCAACCAAAACATTGGGAACCCCTTCACCAATTAATTCAGTGGGGACCCCTGCACCAGCCGAGCTAGACGGACTCCCCACACCAACAGACCCAGCCAAACCTTCCACACCAACCAAGCTAGATGGAATCCCCACATACATCTGCCTGAACGGAATCCCCACATCCATCTGCATGAACGGAACCCCCACACCAATACAGCCCAAAATCCCCAGACCAATACAGCCCAAAATCCCCAGACCAATACAGCCCAAAATCCCCTCACCAATAAAGCCAGGCAAACCCTCCACACAAAACAATCCAGTGGGAAGCCCTACACCAATGGATGAAACCTCTGACTCCTCTGAGCACCAGGACCAAGAAATGCAAAGGCCAAAAAGAAAAATGTGGAGAGATGGAGATCTAATCGAAGCTGAAGACAGTGCAACCACTCAAGCACAAAAGAGAATAAAAGCCACAGAAGAGTGTCTGAACATGGATACGGATAGGCCCACGGTGTCAAGACATGCAGAGGTAGACACTGAAGTATTAGATCAACTAGAAAAGAGCAGCATTGTACAAGCAACCAACAAGCAAACTTTGTGGGCTATAAACTGCTTCAAAGACTGGCTGGCAGAGAAACAGATGATAGTGGATTTTTCAACCATTGAGAAATCTGAAATGAATGTGCTCTTGCGAGATTTTTACTGTTCTGTTCGAAGGGGTAAAGGTGGGGAGTATTGTATCCCGAGCTATATCGGAATCCGGGCTGGCGTGAACAGATTCATTAACCTCCCTCCCCTTAGCAGAGCCTGGTGCTTGATGAAGGACAGTGAGTTTACCTCCTCTAATAATGTATTTATTGGGGTACTAAAGAAAATCAGACGAGAGGGCAGGGACAAAACTACCCATCCTAAGGTGATTAAAGCACAAGaccttgagattcttcaaaactCTCCTGTGCTAAGCCCCTACACACCAAGAGGGCTAGTCAACAAAGTGTGGTTTGATATCCAGTTACACTTTGGCCCCAGAGGAAAGGAGGGCAATAGGCGGCTAACGCCACAGTCGTTTGTAATAAAGTACGATGAAAACGGAGCAAAATATGCAACGATGACTTCCAGCGAGGAAAGACAGAACCATAAAGATGCAGAAGAGCAGAACTGGCAGAATCGCTGTGGAATCATGTTTCAGAACCCTGGTAGTCACCTCTGTCCAGTCGCCTCCTTGGAGAAGTATCTGAGCAAGATCCCATCAGATGCCACCGCCCTCTACCTCCATCCTAAGAAAATGGTCATCACCAGTGACAGAATATGGTATAGCCAGGAGCCAATGGGGTTCAATTACCTTTCATCAATGCTGCCCCGACTGTGCCAGGAGGCTGGTACATTGGAAAAGTACACAAACAACTGCTTACGATCTTTGCGCGAGATCATGTCTGTCAGCACACTGATAGTTCCTTGAAAAGTTATTGAAAACCTTCAATGGACAGAAAGAGATCAAATAGGCTCACTGAGTCAAGGCAGTGACACACTTCAGTTTTACTTCCTACCAGCGACATTGTTTTGGTCTTATACGCAAACGGAGAGCTTGCCAAGATATACAGTCCTCACCATATCTATATGGACTATGTATTTTGACACTGAGGCTAAGATTGACATTTTTTGCTCTATATTCCAGCATTTTGTATTTAAGATGAATGAGGCGACAGTCCAGAATTTAACCTTTTGAATTAAGATGATGTTTTAAGGTATAGATTTTGTTTTGCGCTGAGACTTCACTTTTCAGAATTGTAAAGCCTTTTAAGATTTAATTTCACCAACAAGTTTTACTCTACTGGAAACTGTTTAACCATAATAATCCATTTAGGAAATCTAAAGTttagggcgggggggggggggggaatcgcAGCAATCGCAGGATAATAGGGCGGATAGATTTTTGTatgtgtgaaatatatttttttggggtgACTGGAAGCAATTTGATGTGATACTTCCTAGATGTTTTTACATGTGTACACCACTTTGTAGACCATCTGTTGTGGCAAATGGTCATACAGCTGTTTTATCAAATTTAATTGTACCCTTCACATAGAAGTGATATTTCCCTTATTTACTAGATCTATTATTTAAAGGTTATGTACCAACTACCTAAAATTACCCGTATCCCCTTAAATTCAAGATTTTGAACTATGTATGCCTCTTTCTCAGAAAGAAATGGAACTTGCAAAACAATTTTGCAAGCTATAATGATAGTGCAGCAGAACCTGTTAGGAGTGCTTGAGAGTTAAGGTAGTAACAAGAAGTGTGGAAAGCCAGATGAGCCAAACATATGTTGCGGGAAGGGACAAAAGGCCCAAGAGACGTTGTAAACCATAGGGAACCAGGAGTAAGACCGCATCGAGAGAACATACGGGGTGAAACAACTTCATCTGAGGGCTGAGAGCATTTTGATGTCGAATATGAGTAATAACAAGTACATGTATCCTAAAGTCTGTAGGCATAGTGAACTTGATTACATTATAATGTTGGCCTACATGCATAATTGTAGCCCACTTTTCCTTCCCTgcactagggctgctgaatcaagtgcacctaccgctaACGGCGCAAAACAAATAGGAACGCAAGGCTTTATCAGAGTTTTTAAACCAAACTGTACTGTCTTGGGCTTtatcattgtttttgtttttttacagaaatgcttGGAGATCACGATCGACCTGTTGGTAGCAACTGTTGTAGCCTTTTATTTGCGAGGCACAAAGGTGCATCAATAGAAATAACTTGCCCCGCAATAGATTTACCGTTTctcagtatggtagggcaaaggCCTGCAAACTACTAAACCTGATAATCGTCCAAAAGTAGCACACTGATGAGAAGAATCTGTAGTAAAACCCGGACTCGAGGGTAAACTGTCTAACAAAATGAATAATTAGACATTCGAAACCACCTGTAACCATGAACAACATTTTGGAATGACCACACAAACTGTGAAATTATCATTCATGGGCTACAGGCAACCAACCATAACTTGAAGTTGAAAACCACAAATCAGAATTTATATATTCCAGTTGCTACTGGGAGGAGAATAACCATTACGCGTTGAACACACCGACAGTGtaattgcattttggtacaccagaattacattAATTCCCAATGAAACGCTGCGTTTGCGTTGCAGTGCAGTTTTGTTTATGAGAATGAATGAAATACCTGGAGTGATGAGTTTATAAAGCATGGATGAAACTTTTCTATCATCACCGAAGAACCCTTTAATAAAATGGCAGTGCTATTGCAAAGTAGGCTACAATTATGCATGTAGGCTAACATTATGTAAAATCTGAATGGCTATGCCTGCAGACTTCAGGATACATGTTTTACTGATTGCTATACAATACTGATCCATGCTTGCCGGCAATGGAGTGTCAGGAAATGTAGAAACGGAAGATCCAAGTTCAAGTGTAATTATCCATCTGGTTAGCTTTAGGCTTTTGCACTCAACATGGAAATATAATTGTTGTGATTTGAAGTTGTATTGAAGAATTTATTCATGTAACACACCGACAGTGTTATATTACGATGAGCTATAATATAATCACTAGGCCTATGCTTTGCATGCAGACTGTTAAAGAATGTGACAATGAGTAACAATGAATGTTGTCAGATCGATAAGCATTTAATTAATTACCTAAAGATTTGGATGTATCTCTGTGCACTTCCTGCAAAAGAAAGGTTGACACTAGAcattttgttttgctttttaTTATATAATTAAAACCAAAAACATATAAT

Function

NR:

description
uncharacterized protein LOC110493801 isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021568293.2 False 5024 mRNA 0.42 8 35122549 35132583
XM_021568295.2 True 4931 mRNA 0.42 7 35122549 35132583

Neighbor

gene id symbol gene type direction distance location
LOC110493797 LOC106564786 coding upstream 174336 34923682 ~ 34948213 (+)
LOC110493796 LOC106564787 coding upstream 219347 34844350 ~ 34903202 (+)
LOC110493794 srsf7 coding upstream 320227 34787290 ~ 34802322 (+)
LOC110493791 NA coding upstream 341956 34776863 ~ 34780593 (+)
LOC110493792 LOC106564790 coding upstream 352724 34695397 ~ 34769825 (+)
LOC110493802 LOC106564779 coding downstream 7013 35120694 ~ 35184540 (+)
rbbp9 rbbp9 coding downstream 96132 35228715 ~ 35232156 (+)
dzank1 dzank1 coding downstream 106313 35238129 ~ 35252453 (+)
LOC118940403 NA coding downstream 131612 35264195 ~ 35266310 (+)
rrbp1b rrbp1 coding downstream 147413 35279996 ~ 35311816 (+)
G1442579 NA non-coding upstream 19232 35102922 ~ 35103317 (+)
G1442573 NA non-coding upstream 21378 35091349 ~ 35101171 (+)
G1442548 NA non-coding upstream 69081 35053035 ~ 35053468 (+)
G1442547 NA non-coding upstream 70056 35052146 ~ 35052493 (+)
G1442525 NA non-coding upstream 98960 35023385 ~ 35023589 (+)
G1442640 NA non-coding downstream 84729 35217312 ~ 35217841 (+)
G1442852 NA non-coding downstream 145303 35277886 ~ 35278161 (+)
G1442855 NA non-coding downstream 147487 35280070 ~ 35280283 (+)
G1443054 NA non-coding downstream 300171 35432754 ~ 35432986 (+)
LOC110493778 LOC106564798 other upstream 819940 34290017 ~ 34317682 (+)
G1441315 NA other upstream 1146074 33976193 ~ 33976475 (+)
G1440890 LOC106564813 other upstream 1598015 33524199 ~ 33524534 (+)
G1440162 NA other upstream 2166492 32951800 ~ 32956057 (+)
G1440066 NA other upstream 2325117 32797098 ~ 32797432 (+)
G1443221 NA other downstream 541381 35673964 ~ 35744642 (+)
G1443251 NA other downstream 614289 35746872 ~ 35751790 (+)
LOC118940407 NA other downstream 1106361 36234292 ~ 36242642 (+)
G1443844 NA other downstream 1198652 36331235 ~ 36375374 (+)

Expression


Co-expression Network