rbbp9 (rbbp9)


Basic Information

Item Value
gene id rbbp9
gene name rbbp9
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 35228715 ~ 35232156 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021567438.2
CAAAATTGACTCACTCGAACATGCACTGATGAAAGTCATATGACTACTCACAGTTAGCATTGTTTAGGGAAGTGTATTCAACATCGACAGAAGAACGTGGATAAGAGAAAATGCCACTAACGAAAGCGATAATTGTCCCAGGAAATGGAGCTGGAGATGTAGAGCGGTCCAATTGATTCCAGATATGACCTGCCTGTTGAGCAACATGCCTGACCCAGTGACAGCCAGAGAGAGCATATGGTTGCCATTCATACAGGAGGAGCTCCAATGTGATGAGGAGACTGTCATCATTGGCCACAGCTCTGGGGCTGCTGCAGCCATGAGgtatgcagaaacacacaacgTGTTTGGCCTCATTCTGGTGGGTGCCTATACTTCTGACCTGGGagatgagaatgagagagagagtgGATATTTTAGCCGGCCATGGGAGTGGGAGCAAATGAGAAGAAACGTTGGGCACATCGTTCAGTTTGGCTCCACGGATGACCCCTTCCTGCCTTGGGAGGAGCAGCAAGCTGTGGCCGAGGGCCTGGGAGCGGTGCTGCACAAGTACACAGACCGAGGACACTTCCAGAACACACAATTCCCTGAGCTCATTGACGCAGTGCGAAAGCTGAGGGCAGCTGCTTAAAAAGCAGCAGAGTTGTCCGCCATTGGAATATGACACACAATGAGGACAATAGCCCAATTACGAATATCTGTTCAGTTGCTCCCTTCACTCTTTGTCCCTCTGGGGAATCCTCATGTGGACCCTTATGATTACGATATGATGGAGATTCCAATTTATCAAGTGTAGTTCACAATGTCATCAATGTGCTCATCTTTTGCTCCATTACTTTGAGTGCTCTTCGGAAGACTCGCCAGTTTTGATTCACCTGTGTTTCCAGCAGTTTGTTGAAAGAGGTCAGCATATATTAAGATTCACCCACAAATGCACATTTTACTGACAGCCCTGAGTTTCCATCAAACTGGCTTCTTGCAAATAAAATGCTGTGCGAAAAGACAGAA
>NM_001165246.1
AGAAGAACGTGGATAAGAGAAAATGCCACTAACGAAAGCGATAATTGTCCCAGGAAATGGAGCTGGAGATGTAGAGCGGTCCAATTGGTATGGATGGGCCAAAAACAGATAAATAAGATTCCAGATATGACCTGCCTGTTGAGCAACATGCCTGACCCAGTGACAGCCAGAGAGAGCATATGGTTGCCATTCATACAGGAGGAGCTCCAATGTGATGAGGAGACTGTCATCATTGGCCACAGCTCTGGGGCTGCTGCAGCCATGAGgtatgcagaaacacacaacgTGTTTGGCCTCATTCTGGTGGGTGCCTATACTTCTGACCTGGGagatgagaatgagagagagagtgGATATTTTAGCCGGCCATGGGAGTGGGAGCAAATGAGAAGAAACGTTGGGCACATCGTTCAGTTTGGCTCCACGGATGACCCCTTCCTGCCTTGGGAGGAGCAGCAAGCTGTGGCCGAGGGCCTGGGAGCGGTGCTGCACAAGTACACAGACCGAGGACACTTCCAGAACACACAATTCCCTGAGCTCATTGACGCAGTGCGAAAGCTGAGGGCAGCTGCTTAAAAAGCAGCAGAGTTGTCCGCCATTGGAATATGACACACAATGAGGACAATAGCCCAATTACGAATATCTGTTCAGTTGCTCCCTTCACTCTTTGTCCCTCTGGGGAATCCTCATGTGGACCCTTATGATTACGATATGATGGAGATTCCAATTTATCAAGTGTAGTTCACAATGTCATCAATGTGCTCATCTTTTGCTCCATTACTTTGAGTGCTCTTCGGAAGACTCGCCAGTTTTGATTCACCTGTGTTTCCAGCAGTTTGTTGAAAGAGGTCAGCATATATTAAGATTCACCCACAAATGCACATTTTACTGACAGCCCTGAGTTTCCATCAAACTGGCTTCTTGCAAATAAAATGCTGTGCG

Function

symbol description
rbbp9 Predicted to enable hydrolase activity. Orthologous to human RBBP9 (RB binding protein 9, serine hydrolase).

NR:

description
putative hydrolase RBBP9

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016787 hydrolase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021567438.2 False 1011 mRNA 0.47 5 35228715 35232156
NM_001165246.1 True 942 mRNA 0.48 6 35228803 35232145

Neighbor

gene id symbol gene type direction distance location
LOC110493802 LOC106564779 coding upstream 45476 35120694 ~ 35184540 (+)
LOC110493801 LOC106564780 coding upstream 96132 35122549 ~ 35132583 (+)
LOC110493797 LOC106564786 coding upstream 280502 34923682 ~ 34948213 (+)
LOC110493796 LOC106564787 coding upstream 325513 34844350 ~ 34903202 (+)
LOC110493794 srsf7 coding upstream 426393 34787290 ~ 34802322 (+)
dzank1 dzank1 coding downstream 6740 35238129 ~ 35252453 (+)
LOC118940403 NA coding downstream 32039 35264195 ~ 35266310 (+)
rrbp1b rrbp1 coding downstream 47840 35279996 ~ 35311816 (+)
LOC110493172 NA coding downstream 136730 35368886 ~ 35392355 (+)
bdh2 bdh2 coding downstream 423319 35655475 ~ 35677264 (+)
G1442640 NA non-coding upstream 10874 35217312 ~ 35217841 (+)
G1442579 NA non-coding upstream 125398 35102922 ~ 35103317 (+)
G1442573 NA non-coding upstream 127544 35091349 ~ 35101171 (+)
G1442548 NA non-coding upstream 175247 35053035 ~ 35053468 (+)
G1442852 NA non-coding downstream 45730 35277886 ~ 35278161 (+)
G1442855 NA non-coding downstream 47914 35280070 ~ 35280283 (+)
G1443054 NA non-coding downstream 200598 35432754 ~ 35432986 (+)
G1443057 NA non-coding downstream 204833 35436989 ~ 35437368 (+)
LOC110493778 LOC106564798 other upstream 926106 34290017 ~ 34317682 (+)
G1441315 NA other upstream 1252240 33976193 ~ 33976475 (+)
G1440890 LOC106564813 other upstream 1704181 33524199 ~ 33524534 (+)
G1440162 NA other upstream 2272658 32951800 ~ 32956057 (+)
G1443221 NA other downstream 441808 35673964 ~ 35744642 (+)
G1443251 NA other downstream 514716 35746872 ~ 35751790 (+)
LOC118940407 NA other downstream 1006788 36234292 ~ 36242642 (+)
G1443844 NA other downstream 1099079 36331235 ~ 36375374 (+)
LOC110493174 LOC106582647 other downstream 1260221 36492282 ~ 36557771 (+)

Expression


Co-expression Network