XLOC_033267 (mbd6)


Basic Information

Item Value
gene id XLOC_033267
gene name mbd6
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 58871600 ~ 58910402 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00064573
CGTGGAGCTGTACGGAATTCCCAACCCCGACAGCAGCTACTGCGCAGGCGCGGACGAAAACTCCATGATTTTTTTTGGCACGGGATACCAGGGAAAAATAGGAACTTGGAAACGAAGATAAACTAAAAGCACCATTGCAAAGCCGCCATCAAGCCCTCGCTCGCCTGTGCACGCAGGAAAGACGCTTAGGAAGCCGCTGGACCTTTGAATGAAGCGATCTCTGGCTCCGCGGCCGAGCAGGATTCACGCGAAACTGGACGACAATGCACGGGGCGCAATAAAACCGAGCGTTATTGCTCTTTGTTTTTAAGCAGGACGGCTCGGATGGTGCTCGGGGATGAGGACGCGGGGAAGTGGCTGAAAATCTCTCGGCGGTAATAACAGCTCCAGCGACGGCGACATCTGCGAGTCGAGCCCGTCGAGACGCTTGTTCTGGGTTGTGCAGCTACGAAGAAGCAGGAAACTTTGTAAACAGAGATTTTCCACTTCTGGATTTGCACCACAGCATTACAGTCCACTGGAGAGGACCAGAGAGGATCGTGTGTGGAGCCGGATTGGTGGTTCTCTCCTGTTGTCCTTCATTTATGCTGCCTAAATGTCCTTCAAAGGGTGCATTTCACGAACGGTGCTGACCAAGGCTGTATAAAAATGAAAAGgagctggATGTGTGTGATCAGAAAATGACGGGGGGCAGTGAGAGTGTAGCAGGAGAAAAAGATGGAGGAACGACGCTCATCGCTCAGGTCCCGGTCGGCTGGCGGAGGAAGGTGGAGGACGGAGCTGTGTCTTACATCAGCCCGAGTGGTACAGTCCTTCAATCTGTGGATGAGGTGAGGGTGTATCTGCGCACAGACGGCACATGTAAGTGTGGTCTCGAGTGCCCGCTTGTCCCAAATAAGGTCTTTAATTTTGACCCTGCTGCAATGGTCCAAGCTCCTGGTCATCAGTCGGGTAAAGTAGAGGAAGACATGACCAAACTCTGCAACCATCGCAGGAAAGTAGACGCTATGACAGCGTTATGTCAAAGCATGCATCCCTCACATCTCGCACCACTGGCTCAAGCCACAGGAGGTGTTGTATGCTCAGTGGACGGCAGAGAGTCGAGAGGATCAATGCTAACACATGGAGACGGAGCCCACTGCACTTACCCTCAGCCCAGACACAGCCAGCCCAAACCCAACATGGGCTTTCCTCTGTCCTCCTCTCGCTCTGTTCTGCAGAACGGCTCTGTTAATCTCTCCCCGATTTCACGACCTCCAGATCAGGGTTCACCTCTAAAGAAGTCCCAGGCGCCTGTTTACGCAAAGCAGCAGTGGAGCCCTCACCCGCCGCTCATTCAGAACACCCCCCAAAGAACAGCACACAACCCAACATCTCCAAACAATGTAAAACCAACGCAAGCGCATCCTCCAGACTCCATAAACTCATTCTCATTTTCATCATCTTTAAGCAATCGAACTATTCCACCGATGTCCCAGGGGGCGAGTGTTAAGTCTCCGTCTCCTCTTTCGCCGTCTCGCACACGGGACTCATTCTCACCGCACCAGCGTTCTCGACACTCCTCCACATCTTCACTATCCGATCATCAAATCTTCATCCAGGGAGCCAAACCTCTGCATCCCACAATGCCTTGCTCTTCTCCCAAGCTTCCCAATGCACCCTTGAGTCCGTGTAGTCGCCTGGAGGGCATTCTGCAGCACTACAAAGATTGCAGTACGTCCTCAAGCATTAGCACCAGTGCTAACCAAAGCATCCATCAGGCGTCATTAGTGGCTCTTCCCAATGCAAGTGACAAAAGGAACGGAGCGATGCTCGGACAGATTCTCAATCAGAAGCAAAAGAGCCACATTAATAACTCTTTCCCTGCTAGCAGCCTTTTATCGGCGGCTGCTAAAGCAcagttggccaatcagaaaacaGAAGGGCTGTCCGCACTCCCGCTTGCAGGCCTGGACAAGGAGCAGCAGTCAAAGGTATTGATTAGCACTTTAAACAGTAGCGTCCACAACACTTCCTCCAGACCGCAAGCCCTGACCGCCCTCTTGCTCCCGCACTCCCCTGCTTCCCCCTCCGAGAAAAACTTGCGGCGCAAACGGCAGAGGCGGTCGCCCACCGTTTTGAGCATGCTGAAAGACACGCAGTTGGGTCGTACTGTTTTAGATCTATCCTCACCACCTCAGCTCATCCCTCCATGCTCTTCTCCTCCCGTACACAACAGCTCCGACAACCTCCGGCTGCCTGTCAATCCTCCGAATTGCAGATTGCAGGATTCGGAGGAATGCAAGAAGCCGGGGATTGCTAATTCGCTTCCTTCCGCATCTCCATCCCAACCCCTCTCCGCCCTGCTTCACCTTCTTAGCATGCAGAACGCAAATCAGCAGTGCATTGGTGCCAAGCCGGGTAACATGCACGCAAACACATCCCCCAGACCCATCACTCCACTGACGCCCCAAGGTGACGGGCAGTCTGTGTTACGCATACACAACCCACAACCCCAAAGCACAACCCCTACTCTAGACCCCCAGCAGCCGGCATCCCAAGCGTTTCCGATAATGGGTGACGAGACAACAGCAAACCTCAAAGCCGCCTCCAGCAACACCATCCTGAACCTGAGCCAGCCCCACGTGGGCACCACCACGCCAGACCTCAGCGGTTCAATTATATCCATGATCAACCAGATGTCCTCAAACTCCTGCTTGCCCACGTTTGCGGAGAAAGTTTGTGGGTCCAAAATGACCGAGGCTTATCCTGAGCACAGCACCTATCAGATTAACCAGCCAAACCACAGTCCAGATGTGGAAGATAAAGGTCCTGTAGAGACGATAGACTCAGACACACGATTGCTGGCTGGCTGTGAGCCCGACCACGGCCTCTCGTTATCCACTGCCCCAACTTCTGACCTTACCAACCCAGCCACAGACCCTGCTATCTCCCTCCCGCTGGCCGAGGCTTTTCCCTTCATGACCCAAGAACAGCTCCTCCAGCTTCTGTCCTCCAATGCTGGCCTGCCTTCCCTTCTGCCGCCCTTCCTAGGCTCCCTACCTCTCGGCCTCTGGACGGGCAGTCAACCCTCGACGCCAGGCAGCAATCAATCTCAGCATCCACCCATTGGGAACCAGGGATCTCCTCTTAACCTTCTCAACCAAGCCGAGCTCCCTCTTAATCTCCTGAGCCTGTTAAATCCTGCAGGATCGGCTGCAGCGCTGCCCCCGGTGGCAGGGGTGGAAACTGGAGAAAAGCCCCCAGGGCTTCAAGCTCTCCTAATGGCTTCTTTGCTTCTCGGACAGAATCCGGCAGCCATGTTGCCATTACCGGCGCTCAATCTGGAGCTTCCTACGCCGCCGCAGCAGGTGTTTGCGGACGGGGTGTCTTTGGAAAAGCCACCTGCTCTGCTGGACTCTGTGCTGATGGGGCCGGGGCTTCTGGAGGCTCTTCAGACTCTTGCCCCGGGTGCAGACGGCCAGTCGCTGCTGCTTTCTGCCCCTCTCGCTGCTCCTCCACCCGCATTCCTGTCCCTCAATCCCGCTCTGCTGGCCGCAGCTCTCGCACAGACCGAACCCCTACCCAACCACACGCCATCCCCCCCGCCGCATTCTCAGGGGACTCTGTCCAGCCCTGCTCTAGTTTCTACCTCGGTGTCCTGCGGCCCTCTGGTGTCGGCGGGGCCAGAAGTTTGTGACCCGCTGGCGGAGCAGGACAAGAACAGCCAGACGCATCACTTCCTATCGCCGCTGCTCGCCCCGGGGGTTCTGGgtgacCTGGCCGCTCTAGGGAACATCAACAGTCTTCATGGTTTACTGGGAGCAGGACCTCTTCTTCTGCCGCAGGGCGTCCCGCTGACACAGAACCAGACCACTCTCAACCCCCTCACCTGCCTGCAGCTGACGATGGCGCCGGCGCTCATGGGAGAAAAGCCCGTAGCGCTGCATGAAACTCCTCCGCCACAGGACGCCGCCGCTCCGCCTCATGATTCCCTGTCGCAGCAGAGAGAGGCGCCAGGGCTGTTCGATCCGTACGGATCCTTCATGGACACCATCTACACCTCCTTCCTGCAGGTGAGCGAACGCGGCTCCGACTCGAACCCGCTGACCTTCCCAGCGCTCCTCCAGCAGGCTAGCGCTCCTCCGTCTCTGAGCCCACGCCGCGCCTGCTCCGTCCACAACCCTGACTTGTCCCGCCTAGGCCCGGATGTGGCTCAGTCTCCGGCCCGCGGGACGCCCAAACCCAGCGGAGACTCGCCGCCGCCGCCCTGCAGGCCAGCCGGAGCACACGCACTCACAGTAGAGGAGGCCAAAACACACACATCCAAACACTGTGTGTTCAGCAACGGCCTCCGCTCtgaaggaggagaagaagaagaggaggaggatgaggatgAAGATGCAGGAGTGCAGGAGTATCTGAGTCCCACACAGAGGACGAGCAGAGACGAGGATGAAGATATCAGCCACGCGGAGCAAATCAGGgctgAAGACGTGCACACAGGATCCAGAAGGGGGCGCAAGAGGAAACAGACGCTTCAGATGGGTTCAGATCTGCCCGGCGGCATCGACAGCATCATTGAGGAGCCTTCGGCCTCTGCAatCTTGGTGTCCAGATCATCTCGCTCCAGCAGAGGAAAGAGACGCCGCGTCCTGCGCTGAACAACACCAGCACTACATCAGCCACTGTGAAGAGTCacgcctgtttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgaacatCTCTCactcactttgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgaacatCTCTCactcactttgtgtgtgtgtgtgtgtgtgtgtctgaatatTGCTTGCTGTCTGTCTCAATGCCTCTTGCTCTATCTGTGTGTCAGTCTCTCTCTCccctctttgtgtgtgtgt
>TCONS_00064574
ATGACGGGGGGCAGTGAGAGTGTAGCAGGAGAAAAAGATGGAGGAACGACGCTCATCGCTCAGGTCCCGGTCGGCTGGCGGAGGAAGGTGGAGGACGGAGCTGTGTCTTACATCAGCCCGAGTGGTACAGTCCTTCAATCTGTGGATGAGGTGAGGGTGTATCTGCGCACAGACGGCACATGTAAGTGTGGTCTCGAGTGCCCGCTTGTCCCAAATAAGGTCTTTAATTTTGACCCTGCTGCAATGGTCCAAGCTCCTGGTCATCAGTCGGGTAAAGTAGAGGAAGACATGACCAAACTCTGCAACCATCGCAGGAAAGTAGACGCTATGACAGCGTTATGTCAAAGCATGCATCCCTCACATCTCGCACCACTGGCTCAAGCCACAGGAGGTGTTGTATGCTCAGTGGACGGCAGAGAGTCGAGAGGATCAATGCTAACACATGGAGACGGAGCCCACTGCACTTACCCTCAGCCCAGACACAGCCAGCCCAAACCCAACATGGGCTTTCCTCTGTCCTCCTCTCGCTCTGTTCTGCAGAACGGCTCTGTTAATCTCTCCCCGATTTCACGACCTCCAGATCAGGGTTCACCTCTAAAGAAGTCCCAGGCGCCTGTTTACGCAAAGCAGCAGTGGAGCCCTCACCCGCCGCTCATTCAGAACACCCCCCAAAGAACAGCACACAACCCAACATCTCCAAACAATGTAAAACCAACGCAAGCGCATCCTCCAGACTCCATAAACTCATTCTCATTTTCATCATCTTTAAGCAATCGAACTATTCCACCGATGTCCCAGGGGGCGAGTGTTAAGTCTCCGTCTCCTCTTTCGCCGTCTCGCACACGGGACTCATTCTCACCGCACCAGCGTTCTCGACACTCCTCCACATCTTCACTATCCGATCATCAAATCTTCATCCAGGGAGCCAAACCTCTGCATCCCACAATGCCTTGCTCTTCTCCCAAGCTTCCCAATGCACCCTTGAGTCCGTGTAGTCGCCTGGAGGGCATTCTGCAGCACTACAAAGATTGCAGTACGTCCTCAAGCATTAGCACCAGTGCTAACCAAAGCATCCATCAGGCGTCATTAGTGGCTCTTCCCAATGCAAGTGACAAAAGGAACGGAGCGATGCTCGGACAGATTCTCAATCAGAAGCAAAAGAGCCACATTAATAACTCTTTCCCTGCTAGCAGCCTTTTATCGGCGGCTGCTAAAGCAcagttggccaatcagaaaacaGAAGGGCTGTCCGCACTCCCGCTTGCAGGCCTGGACAAGGAGCAGCAGTCAAAGGTATTGATTAGCACTTTAAACAGTAGCGTCCACAACACTTCCTCCAGACCGCAAGCCCTGACCGCCCTCTTGCTCCCGCACTCCCCTGCTTCCCCCTCCGAGAAAAACTTGCGGCGCAAACGGCAGAGGCGGTCGCCCACCGTTTTGAGCATGCTGAAAGACACGCAGTTGGGTCGTACTGTTTTAGATCTATCCTCACCACCTCAGCTCATCCCTCCATGCTCTTCTCCTCCCGTACACAACAGCTCCGACAACCTCCGGCTGCCTGTCAATCCTCCGAATTGCAGATTGCAGGATTCGGAGGAATGCAAGAAGCCGGGGATTGCTAATTCGCTTCCTTCCGCATCTCCATCCCAACCCCTCTCCGCCCTGCTTCACCTTCTTAGCATGCAGAACGCAAATCAGCAGTGCATTGGTGCCAAGCCGGGTAACATGCACGCAAACACATCCCCCAGACCCATCACTCCACTGACGCCCCAAGGTGACGGGCAGTCTGTGTTACGCATACACAACCCACAACCCCAAAGCACAACCCCTACTCTAGACCCCCAGCAGCCGGCATCCCAAGCGTTTCCGATAATGGGTGACGAGACAACAGCAAACCTCAAAGCCGCCTCCAGCAACACCATCCTGAACCTGAGCCAGCCCCACGTGGGCACCACCACGCCAGACCTCAGCGGTTCAATTATATCCATGATCAACCAGATGTCCTCAAACTCCTGCTTGCCCACGTTTGCGGAGAAAGTTTGTGGGTCCAAAATGACCGAGGCTTATCCTGAGCACAGCACCTATCAGATTAACCAGCCAAACCACAGTCCAGATGTGGAAGATAAAGGTCCTGTAGAGACGATAGACTCAGACACACGATTGCTGGCTGGCTGTGAGCCCGACCACGGCCTCTCGTTATCCACTGCCCCAACTTCTGACCTTACCAACCCAGCCACAGACCCTGCTATCTCCCTCCCGCTGGCCGAGGCTTTTCCCTTCATGACCCAAGAACAGCTCCTCCAGCTTCTGTCCTCCAATGCTGGCCTGCCTTCCCTTCTGCCGCCCTTCCTAGGCTCCCTACCTCTCGGCCTCTGGACGGGCAGTCAACCCTCGACGCCAGGCAGCAATCAATCTCAGCATCCACCCATTGGGAACCAGGGATCTCCTCTTAACCTTCTCAACCAAGCCGAGCTCCCTCTTAATCTCCTGAGCCTGTTAAATCCTGCAGGATCGGCTGCAGCGCTGCCCCCGGTGGCAGGGGTGGAAACTGGAGAAAAGCCCCCAGGGCTTCAAGCTCTCCTAATGGCTTCTTTGCTTCTCGGACAGAATCCGGCAGCCATGTTGCCATTACCGGCGCTCAATCTGGAGCTTCCTACGCCGCCGCAGCAGGTGTTTGCGGACGGGGTGTCTTTGGAAAAGCCACCTGCTCTGCTGGACTCTGTGCTGATGGGGCCGGGGCTTCTGGAGGCTCTTCAGACTCTTGCCCCGGGTGCAGACGGCCAGTCGCTGCTGCTTTCTGCCCCTCTCGCTGCTCCTCCACCCGCATTCCTGTCCCTCAATCCCGCTCTGCTGGCCGCAGCTCTCGCACAGACCGAACCCCTACCCAACCACACGCCATCCCCCCCGCCGCATTCTCAGGGGACTCTGTCCAGCCCTGCTCTAGTTTCTACCTCGGTGTCCTGCGGCCCTCTGGTGTCGGCGGGGCCAGAAGTTTGTGACCCGCTGGCGGAGCAGGACAAGAACAGCCAGACGCATCACTTCCTATCGCCGCTGCTCGCCCCGGGGGTTCTGGgtgacCTGGCCGCTCTAGGGAACATCAACAGTCTTCATGGTTTACTGGGAGCAGGACCTCTTCTTCTGCCGCAGGGCGTCCCGCTGACACAGAACCAGACCACTCTCAACCCCCTCACCTGCCTGCAGCTGACGATGGCGCCGGCGCTCATGGGAGAAAAGCCCGTAGCGCTGCATGAAACTCCTCCGCCACAGGACGCCGCCGCTCCGCCTCATGATTCCCTGTCGCAGCAGAGAGAGGCGCCAGGGCTGTTCGATCCGTACGGATCCTTCATGGACACCATCTACACCTCCTTCCTGCAGGTGAGCGAACGCGGCTCCGACTCGAACCCGCTGACCTTCCCAGCTAGCGCTCCTCCGTCTCTGAGCCCACGCCGCGCCTGCTCCGTCCACAACCCTGACTTGTCCCGCCTAGGCCCGGATGTGGCTCAGTCTCCGGCCCGCGGGACGCCCAAACCCAGCGGAGACTCGCCGCCGCCGCCCTGCAGGCCAGCCGGAGCACACGCACTCACAGTAGAGGAGGCCAAAACACACACATCCAAACACTGTGTGTTCAGCAACGGCCTCCATGCAGGAGTGCAGGAGTATCTGAGTCCCACACAGAGGACGAGCAGAGACGAGGATGAAGATATCAGCCACGCGGAGCAAATCAGGGTCAGTGAGGGCTTCACACTAATGGGTTCAGATCTGCCCGGCGGCATCGACAGCATCATTGAGGAGCCTTCGGCCTCTGCAGTGAGGGaacacacacatttcacacaccttcagctgtatatgtacatgtgtttgtgttga

Function

symbol description
mbd6 Predicted to enable chromatin binding activity. Acts upstream of or within definitive hemopoiesis and hematopoietic progenitor cell differentiation. Predicted to be active in chromocenter and nucleus. Human ortholog(s) of this gene implicated in autism spectrum disorder. Orthologous to human MBD6 (methyl-CpG binding domain protein 6).

GO:

id name namespace
GO:0002244 hematopoietic progenitor cell differentiation biological_process
GO:0060216 definitive hemopoiesis biological_process
GO:0010369 chromocenter cellular_component
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0003682 chromatin binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-041027-3 Predicted to enable chromatin binding activity. Acts upstream of or within definitive hemopoiesis and hematopoietic progenitor cell differentiation. Predicted to be active in chromocenter and nucleus. Human ortholog(s) of this gene implicated in autism spectrum disorder. Orthologous to human MBD6 (methyl-CpG binding domain protein 6).

Ensembl:

ensembl_id ENSDARG00000086980

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00064573 False 4894 mRNA 0.56 14 58871600 58910402
TCONS_00064574 True 3867 mRNA 0.57 12 58871966 58901552

Neighbor

gene id symbol gene type direction distance location
XLOC_033266 kif5ab coding downstream 43202 58772209 ~ 58828398 (-)
XLOC_033265 soat2 coding downstream 106928 58737168 ~ 58764672 (-)
XLOC_033264 NA coding downstream 138043 58731298 ~ 58733557 (-)
XLOC_033263 NA coding downstream 199020 58670705 ~ 58672580 (-)
XLOC_033261 tox2 coding downstream 722435 57900237 ~ 58149165 (-)
XLOC_033268 mars1 coding upstream 10838 58921240 ~ 58975019 (-)
XLOC_033269 NA coding upstream 137505 59047907 ~ 59050828 (-)
XLOC_033270 NA coding upstream 140584 59050986 ~ 59053205 (-)
XLOC_033271 NA coding upstream 156553 59066955 ~ 59068903 (-)
XLOC_033272 CABZ01111575.1 coding upstream 226269 59136671 ~ 59136787 (-)
XLOC_033262 NA non-coding downstream 788965 58081635 ~ 58082635 (-)
XLOC_033260 NA non-coding downstream 1081575 57787720 ~ 57790025 (-)
XLOC_033259 CABZ01087330.2 non-coding downstream 1101942 57769542 ~ 57769658 (-)
XLOC_033273 NA non-coding upstream 257658 59168060 ~ 59171539 (-)

Expression


Co-expression Network