capn8 (LOC106565007)


Basic Information

Item Value
gene id capn8
gene name LOC106565007
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 35751432 ~ 35773552 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021568321.2
AAGCCTTTTAGTATACACACAGAAGCAACTACGGCACAGTTCACACAGTCACACTTCACACACTGCAGCCATCTGAGTTCACAGCACCATGTCCAGTATAGCTAACCACTTGGCCAGGAGGAAAGCTAGGGAGGAAGGTGAAGGTAGCAACGACAAGGCCATCCCCTTTAACAAGCAAGACTTCCAGACCCTGAGGAGAGAGTGTCTGGAGAGCGGGAAACTCTTCAGTGACACATCTTTCCCTGCTGATTGGAACTCTCTTGGGTACAATGAGTTGGGTCGCTACTCTTCAAAAACCCGGGGCGTGGAGTGGAAAAGACCAAAGGAGTTGTGCTCAAACCCTCAGTTCATTGTTGAAGGAGCCACGAGAACTGACATCTGCCAAGGGGCTTTGGGTGACTGTTGGTTGCTGGCAGCCCTTGCCTCTCTTACCTTGGACAAAGACATCTTGGCTCGAGTGGTACCCCCTGGGCAGAGCTTTGAGGAGAATTATGCTGGCATCTTTCACTTCCAGTTTTGGCAGTATGGACAGTGGGTGGATGTTGTGATTGACGATAGGCTGCCCACAAGAGAGGGGAAACTGCTGTTTGTTCACTCAGCTGAGGGCTCAGAGTTTTGGAGCGCCCTGCTGGAGAAGGCCTATGCTAAAGTCAACAGTTCCTATGAGGCCTTGTCTGGGGGCTCCACCACAGAAGGCTTTGAGGACTTCACTGGGGGCATCGCTGAGACATATAATCTTAGCAATGCCCCACAGTGCCTGTTCAAAATCATGAAGAAGGCCCTGGGGCTGGGTTCTCTATTGGGCTGCTCCATTGATATAACAAGTGCGTACGAGACGGAGGCAGTTACTGGTCAGAAGCTGGTGAAGGGGCATGCGTACTCAATCACTGCAGCAGAAGAGGTACACCTGCATGGGACTCCAGTTGAGCTGGTGAGGATCAGAAACCCCTGGGGTCAGGTGGAGTGGACGGGTGCCTGGAGCGATGATTCCAGGGAATGGGATGGCGTACGACCGGAGGAGAAATCCAAGCTAGACCACTCTGCAGAAGATGGAGAGTTTTGGATGGCCTACTCTGATTTCCTAAGGCAGTACTCCAAGCTGGAGATCTGCAACCTGACTCCAGACACGCTGGTCAGTGATGAAGTGGGTCGCTGGAACCACTACCAGTTTGAGGGGATGTGGAGGGTAGGCTCTACCGCTGGAGGATGCAGGAACCATGCAGCCACATTCTGCTCAAACCCCCAGTTTGCCATTAAATTGGATGATGTGGATGATGACCCTCATGATGGCAAGGATGGCTGCACCTTCTTGGTGGGCCTCATGCAAAAAGACGGCCGCAAAGAGAGGAGATTCAGCCGGGACCTCAACACCATTGGCTTTTCAATATACCAGGTTCCTGATGAGTATAAGGGCCGCACCAACATCCACCTGGGCCCAGATGTGCTGCTGAGACAGAAGTCTGTGGCAATGAGCAATACCTTCATCAACCTGCGGGAGATCTGTGACCGCTTCAAGTTGCCCCCCGGGGAGTACGTCATCATCCCCTCCACGTTTGAGCCGCACAAGAAGGGCAGCTTCCTCTTGAGAGTCTTCGCCGAGAAGCATGCTGCCACCAGTCCAATGGAAGAGGATATCAGTGTGGAAGTTGACGAGCCTGATATTACAGAGGGTGATGTGGATCCCTACTTCAAACGTCTATTCTTGCAGATTGCTGGAAGCGATTCCGAAGTTTCTGCCTTTGAACTTCAAAAGATTTTAAACAGAGTGGTAACTCAGAGATCTCACGTCAAAACCGATGGATTTAGCCTCGAGACCTGTCGTCACATCATCAGTCTGTTGGATATGGATGGCAATGCAAAGTTGGGCCTGGTTGAGTTCCATACTGTGTGGACTAAGATCCAGAAGTATTTGGAAATCTTCAAAAGTCACGACTCTGACAACTCTGGCACGATGAGCACCCACGAGATGAGGGGGGCGTTGACTGAAGCAGGATTTCAGCTTAACAGCGAGGTGCTCCAGCTAATTGTGTCCCGCTACGCTAACTCAGAGTACTCCATGGACTTTGACTGCTTCATGGGCTGCCTGATACGACTGGAAATGCTATTTAaaaTGTTCAAAACACTTGACAAACATGACAGTGGGAAGATCGAATTGGATGCATTGCAGTGGGTCTGCCTGGGCCTCAATTAAGATTCCAGAGATAATAATCTACTACAGGGACAGATGAAGACATACAACTCAATTGCATTGGACTTTACGGCTAAGATTTCTCAAtgtgttattttactgttgctttTATTGAATGAGACTTGGACAAAATACTTTATAGGGCTCTTGTCTACAATAGCCTATGGATCACTCtacaccagggttggggtcaatcagattgaaaaaatattttatattttaccatAAGACATATTGAGACCTAGGTCTCTTGTTCAAATGTGCCCTGcgcaatacaacaacaaaaatatacaca

Function

NR:

description
calpain-2 catalytic subunit-like

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0004198 calcium-dependent cysteine-type endopeptidase activity molecular_function
GO:0005509 calcium ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021568321.2 True 2483 mRNA 0.49 21 35751432 35773552

Neighbor

gene id symbol gene type direction distance location
LOC110493815 acyp2 coding downstream 99822 35644751 ~ 35651610 (-)
LOC110495171 cssa12h2orf73 coding downstream 133437 35615229 ~ 35617995 (-)
LOC110493814 LOC106584953 coding downstream 146157 35517752 ~ 35605275 (-)
LOC110493813 NA coding downstream 239626 35453560 ~ 35511806 (-)
mtif2 mtif2 coding downstream 407189 35318213 ~ 35344243 (-)
LOC110493824 LOC100196678 coding upstream 51068 35824620 ~ 35825355 (-)
LOC110493826 LOC100196678 coding upstream 51069 35824621 ~ 35838093 (-)
LOC110493173 slc29a1 coding upstream 206346 35979898 ~ 36012831 (-)
LOC118940404 slc29a1 coding upstream 245051 36018603 ~ 36047326 (-)
LOC110493839 slc29a1 coding upstream 279465 36053017 ~ 36081628 (-)
G1443627 NA non-coding downstream 6238 35744796 ~ 35745194 (-)
G1443622 NA non-coding downstream 9837 35738311 ~ 35741595 (-)
G1443557 LOC102790924 non-coding downstream 80660 35668722 ~ 35670772 (-)
G1443551 NA non-coding downstream 111292 35638906 ~ 35640140 (-)
G1443546 NA non-coding downstream 119807 35631366 ~ 35631625 (-)
G1443676 NA non-coding upstream 49773 35823325 ~ 35835608 (-)
G1443674 NA non-coding upstream 57797 35831349 ~ 35847446 (-)
G1443681 NA non-coding upstream 61306 35834858 ~ 35879090 (-)
G1443732 NA non-coding upstream 184014 35957566 ~ 35957874 (-)
G1443777 NA non-coding upstream 186185 35959737 ~ 35959999 (-)
G1442932 rbbp9 other downstream 519278 35228754 ~ 35232154 (-)
LOC110493800 LOC106564782 other downstream 689457 35023723 ~ 35061975 (-)
G1442443 NA other downstream 846816 34904082 ~ 34904616 (-)
G1442336 LOC106564790 other downstream 1030640 34720427 ~ 34720792 (-)
LOC118940405 slc29a1 other upstream 315732 36087429 ~ 36123409 (-)
G1443821 NA other upstream 397318 36170870 ~ 36174051 (-)
LOC118940419 LOC103395674 other upstream 513629 36287181 ~ 36287741 (-)
G1443835 NA other upstream 523380 36296932 ~ 36297265 (-)

Expression


Co-expression Network