XLOC_003327 (ptgfr)


Basic Information

Item Value
gene id XLOC_003327
gene name ptgfr
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 13032483 ~ 13038233 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00006511
gtaccgAACATGTCTCATAACAGAACAGCTGAATGTTTGATGTCAAGCAATGTGTGTAACGGGAGCTGTCCCAAAAGAGAAGTGTCTGTGACTTCAACTGGCATCTCAATGACGGTGGGCATCGTTTCCAACACACTGGCTCTCTTCATCCTGATCAAAGCCTACCACAGGTTCCGATACAAGTCTAAAGCCGCGTTCCTCCTGTTTGCTAGCGGTCTGGTGATCACCGACTTTTTGGGACACCTGATTAATGGCTCTCTGGCTCTCTACGTGTACGTGTCCCAGAAAGAATGGGAAACATTTGACAATCACAAGTCTTTGTGCGACTTTTTTGGAGTTTGCATGGCTTTTTTCGGCTTGACTCCTCTGCTCCTGGGGTGTCTGATGGCAGTGGAGCGTTGTATCGGAGTGACCCGTCCCCTTTTCCACACCACAGCACTGGGGTCCCATCATGTCAAGAGGCTGCTGGGTGTCACCTGGCTCCTTGGTCTGCTGGTGGCCCTACTGCCCGTCCTGTTTCAGCGCTCATACCAGGTGCAGCGCTCGAGGAGCTGGTGCTTCTTCCGTCTGCAGGGCCCGCGTGACTGGATGGATACGCTTCTGCCCATATTATTCTCTGCTCTGGGTTTGCTGGCTCTCCTCGTCTCACTATTGTGCAATACTATGACTTTTCTCACTCTCCTGCGGAGTAGGGTACAACTTGACCGAAATAATCATCGCCATAGTCGTAAGGCATCACACCATTCGGAGATGGTCTGCCAGCTTTTGGCAATCATGCTGGTTTCCTGTGTGTGCTGGGGACCAATTTTGATAACAGCCATCATTTTCAGCCTGCAGGATCGCGGTGAGGATCAGACATCATACACCCATATGCTGCTGGTTGTACGTATGGCGACATGGAACCAGATTCTCGATCCGTGGGTCTACATCCTTCTACGCAAGGCTGTTTTGAGGAGACTTTTTAAGGTGGCGTTGAGACTTTGCAGTCGTCACTTGAAATTTACATTCCAGTGGCAGAGCAGCAATCTAGGGAGCTCCACCATGGAGGCCAGTAGTTCGGTGATCAGCAGACCAGACTTCACCCCCCTGGATGGAACATTCCTACCAGACACTGCCATTAAGTTAGCTCACCTCCCCCGAGCCTCACTGGGGGATACGAGATCTCAATTCACAGATATTtga

Function

symbol description
ptgfr Enables prostaglandin F receptor activity. Predicted to be involved in adenylate cyclase-activating G protein-coupled receptor signaling pathway; inflammatory response; and positive regulation of cytosolic calcium ion concentration. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Is expressed in several structures, including gill; heart; liver; muscle; and pleuroperitoneal region. Orthologous to human PTGFR (prostaglandin F receptor).

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007189 adenylate cyclase-activating G protein-coupled receptor signaling pathway biological_process
GO:0007204 positive regulation of cytosolic calcium ion concentration biological_process
GO:0006954 inflammatory response biological_process
GO:0007165 signal transduction biological_process
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function
GO:0004958 prostaglandin F receptor activity molecular_function
GO:0004960 thromboxane receptor activity molecular_function

KEGG:

id description
ko04020 Calcium signaling pathway
ko04072 Phospholipase D signaling pathway
ko04080 Neuroactive ligand-receptor interaction
ko04030 G protein-coupled receptors

ZFIN:

id description
ZDB-GENE-120919-6 Enables prostaglandin F receptor activity. Predicted to be involved in adenylate cyclase-activating G protein-coupled receptor signaling pathway; inflammatory response; and positive regulation of cytosolic calcium ion concentration. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Is expressed in several structures, including gill; heart; liver; muscle; and pleuroperitoneal region. Orthologous to human PTGFR (prostaglandin F receptor).

Ensembl:

ensembl_id ENSDARG00000074016

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00006511 True 1182 mRNA 0.51 2 13032483 13038233

Neighbor

gene id symbol gene type direction distance location
XLOC_003325 si:dkey-11m19.5 coding upstream 76745 12879635 ~ 12955738 (+)
XLOC_003324 zgpat coding upstream 157295 12860260 ~ 12875188 (+)
XLOC_003323 rtel1 coding upstream 173220 12811906 ~ 12859263 (+)
XLOC_003322 NA coding upstream 247424 12782215 ~ 12785059 (+)
XLOC_003321 rbb4l coding upstream 261937 12744575 ~ 12770546 (+)
XLOC_003328 zfyve9b coding downstream 20380 13058613 ~ 13088179 (+)
XLOC_003329 CR847923.1 coding downstream 113686 13151919 ~ 13152385 (+)
XLOC_003330 mob3c coding downstream 121755 13159988 ~ 13174477 (+)
XLOC_003331 mknk1 coding downstream 138335 13176568 ~ 13189751 (+)
XLOC_003332 NA coding downstream 155490 13193723 ~ 13194597 (+)
XLOC_003318 CR450764.6 misc upstream 320487 12711700 ~ 12711996 (+)
XLOC_003317 CR450764.16 misc upstream 338220 12693967 ~ 12694263 (+)
XLOC_003316 CR450764.11 misc upstream 346884 12685304 ~ 12685599 (+)
XLOC_003315 CR450764.18 misc upstream 352455 12679732 ~ 12680028 (+)
XLOC_003314 CR450764.9 misc upstream 408632 12623555 ~ 12623851 (+)
XLOC_003369 CR854846.2 misc downstream 3084553 16122786 ~ 16123082 (+)
XLOC_003319 NA non-coding upstream 314081 12718109 ~ 12718402 (+)
XLOC_003307 NA non-coding upstream 509454 12522770 ~ 12523029 (+)
XLOC_003304 NA non-coding upstream 538306 12493872 ~ 12494177 (+)
XLOC_003302 NA non-coding upstream 565423 12466766 ~ 12467060 (+)
XLOC_003341 CR555295.2 non-coding downstream 779336 13817569 ~ 13817684 (+)
XLOC_003342 AL928649.1 non-coding downstream 826613 13864846 ~ 13864964 (+)
XLOC_003344 CT956066.1 non-coding downstream 1043307 14081540 ~ 14082177 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000051_07253002_07255432 PTGFR coding CI01000051 null 7252201 ~ 7255620 (+)