XLOC_033271


Basic Information

Item Value
gene id XLOC_033271
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 59066955 ~ 59068903 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00065268
ACTTAGTTTAGTCCCACACCTGACTGCTCCCTCTGGGTTTTAGTCCCACACCTGACCGCTCCCTCTGGGTTTTAGTCCCACACCTGACCGCTCCCTCTGGGTGTTAGTCCCACACCTGACCGCTCCCTCTGGGTTTTAGTCCCACACCTGACCGCTCCCTCTGGGTTTTAGTCCCACACCTGACCGCTCCCTCTGGGTGTTAGTCCCACACCTGACTGCTCCCTCCGGGTTTTAGTCCCACACCCACTTAGTTTAGTCCCACACCTGACTGTTCCCTCTGGGTTTTAGTCCCACACCTGACCGCTCCCTCTGGGTGTTAGTCCCACACCTGACCGCTCCCTCTGGGTTTTAGTCCCACACCTGACCGCTCCCTCTGGGTTTTAGTCCCACACCTGACCGCTCAGGTTTTAGTCCCACACCTGATAACACCTGACCACTCCCTCCGGGTTTTAGTCCCACACCCACTTGGTTTAGTCCCACACCTGACTGCTCCCTCCGGGTTTTAGTCCCACATCCACTTGGGTTTTAGTACCACACCTGACCGCTCGGGTTTTAGTCTCACACCTGATCACACCTGACCACTCCTTCTGGGTTTTAGTCCCACAACCGACCAATTCCAATGGATTTTAGTTTTGCTTCTTCTGGGTTTAACTCCCACTTCCTCCAGTTTTAGTCCTGTTCCCACTTGGTTTTAGTCCCGTTCCCACtaggttttttattattttaaagtagtTTCAGGGTAGTTTTTCTTTCTTCAGTGGAAGGGTACCAACAATTGTGCCTACATCTGTATATTTTACTATCCCAGTGGGGGTTTTCATAGACTTAATTAATATAGTATAGACTGTATATTCTCTCCTCTACCCCGACTTTAcaaaaacccaaccctcacaggaaacaatctgcatgtttacattttcaaaaaatctaattctgtatgatttataagcATTAGAGCACATGGAGACCTCAATTTTGTCCCCATGGTGACAAATCCCCATGAGTCTGTGTGTATTCAATTGTAAGTCCCCACTGCGATATAaagacatgtacacacacacacagacacacagcagctGTGCCCTTTTCTTTATTCAAGACTCTATTCAACAAACTTTGCACATCAGAGAAATTTTGCCAAAGAGAAATCCAGTAACATCAAAATAAGTTCTTCTAAATTAAATAtgatgttatattttatattaaaaatgtgaCATTTTTAGGACCATTAAGATTTTATTGCATTGGCATTAAATTCCCATTCATGCACACCATAAAATAACAATACTAAAGAAATAATTGTTTGTCTAGTAAATAATTCTTGCTATTGGAAGggcatccgctgcaaaaagcATTTGCTGGAATTCCACTGTGacgatgaataagggactaagccgaaggaaaattaattaataatgcatGGATCTTAAttgcactgaaataaaaaaaagattctgccaaaaatgttgttattttggcatcaaaataaccaaaatatgtgaacaattgaataaaatatataacatttaatatatataagagtaaaattcattcaatcattttcttgtcggcttagtccctttattaatccggggtcgccacagcggaatgaaccgccaacttatccagcaaggctttacgaagcggatgcccttccagccgcaacccatctctggga

Function

GO:

id name namespace
GO:0048731 system development biological_process
GO:0007498 mesoderm development biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0043009 chordate embryonic development biological_process
GO:0048513 animal organ development biological_process
GO:0035295 tube development biological_process
GO:0045165 cell fate commitment biological_process
GO:0007275 multicellular organism development biological_process
GO:0009888 tissue development biological_process
GO:0060429 epithelium development biological_process
GO:0048568 embryonic organ development biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0021906 hindbrain-spinal cord boundary formation biological_process
GO:0048856 anatomical structure development biological_process
GO:0030522 intracellular receptor signaling pathway biological_process
GO:0021915 neural tube development biological_process
GO:0048598 embryonic morphogenesis biological_process
GO:0048332 mesoderm morphogenesis biological_process
GO:0048646 anatomical structure formation involved in morphogenesis biological_process
GO:0030855 epithelial cell differentiation biological_process
GO:0061053 somite development biological_process
GO:0007399 nervous system development biological_process
GO:0032502 developmental process biological_process
GO:0007417 central nervous system development biological_process
GO:0007420 brain development biological_process
GO:0048384 retinoic acid receptor signaling pathway biological_process
GO:0048385 regulation of retinoic acid receptor signaling pathway biological_process
GO:0030902 hindbrain development biological_process
GO:0060322 head development biological_process
GO:0009790 embryo development biological_process
GO:0009792 embryo development ending in birth or egg hatching biological_process
GO:0045111 intermediate filament cytoskeleton cellular_component
GO:0005882 intermediate filament cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:0140110 transcription regulator activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00065268 True 1678 lncRNA 0.43 2 59066955 59068903

Neighbor

gene id symbol gene type direction distance location
XLOC_033270 NA coding downstream 13750 59050986 ~ 59053205 (-)
XLOC_033269 NA coding downstream 16127 59047907 ~ 59050828 (-)
XLOC_033268 mars1 coding downstream 91936 58921240 ~ 58975019 (-)
XLOC_033267 mbd6 coding downstream 156553 58871600 ~ 58910402 (-)
XLOC_033266 kif5ab coding downstream 238557 58772209 ~ 58828398 (-)
XLOC_033272 CABZ01111575.1 coding upstream 67768 59136671 ~ 59136787 (-)
XLOC_033273 NA coding upstream 99157 59168060 ~ 59171539 (-)
XLOC_033274 ndufa4l2b coding upstream 186233 59255136 ~ 59271436 (-)
XLOC_033275 fam210b coding upstream 281554 59350457 ~ 59357256 (-)
XLOC_033276 ppp1r16b coding upstream 301918 59370821 ~ 59388625 (-)
XLOC_033264 NA non-coding downstream 333398 58731298 ~ 58733557 (-)
XLOC_033263 NA non-coding downstream 394375 58670705 ~ 58672580 (-)
XLOC_033262 NA non-coding downstream 984320 58081635 ~ 58082635 (-)
XLOC_033277 NA non-coding upstream 326944 59395847 ~ 59421470 (-)
XLOC_033280 CABZ01117510.1 non-coding upstream 616242 59685145 ~ 59685261 (-)
XLOC_033281 NA non-coding upstream 766727 59835630 ~ 59853683 (-)

Expression


Co-expression Network