LOC110493849 (LOC106582652)


Basic Information

Item Value
gene id LOC110493849
gene name LOC106582652
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 36910525 ~ 36953324 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036949843.1
TTTAATACCTGCACGAGCCTCCGCTCCTTCATTCCATGACAAAATAATTGTTGAGACCAGGCTTAACAACTGCACAACATAAAAGGATCTCATTGTTCCCTGCTTGGTGACTTTGGAGAGGCTTGGATACCACTGCTTTTGCACAGACATTTTGTGAGTCACAGCGggagttttgtgtgtgtggaagtCGCATTTACCGCAGTACCTGTTCCATTCCGACGGCCGAGGTTCTGTCCTACCCAGCACCGTCGCCAGTGTGAAGCCTGCCTAAACTCAGCACCGAGAGGTCCGGCTCCCAGACCAGCACCCTGAACATGagacagctgtgtgtctgtgtgtctgtcctgctAGCCTTGGCCACCATGGCTGTGGCTAGGCCTAAAGAAGGACCGGAGCAGAAGTGCAAGTCTGGCCCAGTGGacctcatgttcattattgacAGCTCTCGAAGTGTGCGGCCCCACGAGTTTGAGTCCATGCGCAAGTTCATGATTGACATCATCCACACGCTGGACATGGAGGCGAATGCCACCCGAGTGGGCGTGGTGCAGTACTCCAGCCAGGTCCAGAACGAATTCTCTCTCAAGACCCATAGCAAGCTGCAGGGCATGGTGAAAGGCATCAATGAGATCGTCCCCCTGGCGCAGGGCACCATGACGGGCCTGGCCATCAAGTACGTCATGAACCATGCCTTCACGGCAGCCGAGGGCGACCGACCCAAGGTGCCCAATGTGGCCGTCATCGTAACGGACGGGCGGCCCCAGGACCGCGTGGCGGAGGTAGCAGCCGAGGCTCGAGACAAGGGAATCGAGATCTATGCGGTGGGCGTTGCTCGGGCGGATATGACCTCGCTGCGTGCTATGGCGTCGCCGCCCATCGAGGACCATGTCTTCCTGGTGGAGTCTTTTGACCTGATCTACCAGTTTGGCCTGCAGTTCCAGGACAAGCTCTGCGGGATGGATCTGTGCCTGGAGTCTGACCATGGCTGTGAGCACCTCTGTGAGAGCTCCCCTCGTTCTTTCCACTGCCTGTGTCTGCCAGGGTACACTCTCAACGAGGATGGCAATACCTGTAAAGCCATAGACCCGTGTGCTGGGGGGAAGCATGACTGTGAGCAGATCTGTATCCCCTCCCCTGGAGCTTTCACCTGCGGCTGCAACACCGGCTACACCCTCAACGACGACAAGAAGACCTGCACAATGATAGACATGTGTGCTGAGGGGAAGCATGACTGTGAGCAGATCTGTATCACCTCTCTGGGCACATTCACCTGCAACTGCAATACTGGCTACACCCTCAACGATGACAAGATTACCTGCACAATGATAGACCCGTGTGCTGAGGAGAAGCATGACTGTGAGCAGATCTGTATCCCCTCCCCTGGAGCCTTCACCTGTGACTGCAGCGCTGGCTTTAAGCTCCACGATGACAAGAAGACCTGCACAAACCTGTGTAACACAGTGGAGCATGGCTGTGAGCACCAGTGTATCAGTACACCAGACTCCTACTACTGCATCTGCCCTGAGGGACAGCTACTGGCGGAGGATGGCAAGGGCTGCCGAACCTGCAGATCGGCCAACATTGACCTGGTCCTCCTCATCGATGGCTCCAAGAGCGTGCGTCCCCAGAACTTTGAGCTGGTCAAGCAGTTTGTCAACCAGGTGGTGGACTCCCTGGATGTGTCCGCCCATGGGACTCGAGTGGGCCTAGTGCAGTACTCCAGCCACGTGCGCACAGAGTTCGCCCTCAAAATGTACGAGAAGGCAGATAACATCAAGAAGGCGGTGATGAACGTGGAGTACATGGAGAAGGGCACCATGACGGGCCTGGCCCTCAAGCACATGATGGAGAACAGCTTCTCGGAGGCCGAGGGTGCCCGCAAGAACATCCCTCGCGTGGGCCTGGTCTTCACTGACGGCCGCTCTCAGGACGACATCACTGAGTGGGCCAAGAAGGCCAAAGAAGAAGGAATCACCATGTATGCTGTTGGTGTTGGGAAGGCCGTGGAGGATGAGCTGCGTGAGATTGCCTCAGAGCCACTAGACAAGCACTTCTTCTATACCACTGACTTCACTTTCATCAACCAGATAGCCGAGAACCTCAAGCTCAATGTCTGTGCAGaggagagccagggagagCTTGAGGTGAAAGACCCATGTGCCTGTGAGAGTCTGGTTGAGTTCCAGCAAGCAACAATGTCCACTCTGGAGCAGCTGAAAACAAAACTGGCGGGTATGACTGCACAATTGGAGGACATGGAGAACCAGCTGCTGTCACGAAAATGAGGGATGTCATTCAAGTAACCCAACAAGAATAAGGAGATGCTTTGAGCATAGAATCATTTTCCTGTCAAGAATGTAAAAGTAAAAACACAAGTCCTATCAATGTCGACTTTCCATGATGTGAATGACCCAAAACAATATTTTATGTAGAATATCTTATTTCAGTGCATGAATGTGGACATGCAATGGACTTAAGTCATGTCAAGCACATCCATACTTAATGTAGACATAAGCACAGGCAACTAGAAAGTACAGCCATTGCTTATAACTTAAAGCTCCAATATGCAACTTTTTGGgcacccaaccaaattcacatagaaatatgagttatagatctgtcattgaaAGTCTAAGAAGCTGGTAGATCTATGCTTCCCGTTTTAAAGTTTTGTTTGTGTCTTTTTACTTTCATTTTTGTAcatcttcaaacagctgaaaataaaatattattgtttatggaaaatatatttcacaacgATTTACATGGTACAATGATGCTCTACACTATAATGTCACTATGAACttaaattaggcaaactattagaattttagcaaccaggaaatgccgGGGTCGATGTCTCCATAGTGCGTCTTAAATACACAGTATTTTTCCATTCTCACACCAGACGGTTTTTATTTGTGCTCCATTTATCCTTAATATGTTTTATATGGTTTGTTAATGTAATGTGTTTATGGCAAGTTTGATACCAGCAGTAAATAACTGGGGCAAAAAATAATTAATAAGTATTATTACCACTTCAAATTCGGACGCATTTTCTCATAGAAAGTAATATAATCCAATAGTTTTAGAGGAATAAATGATAGGAGAGTCGTAAAGAATACAAAATTAGGGTTCCTGGATTCACAAAAGTGAAACCAAGCATCACAAAATTACCTAGATCACAGCAAAACATTACTGTCAAGAGGATGAGAAAGTTCTGTATGAATTTGAGCTCCAAAAAGACATCCTAAATGAGTAATTAAGATCACATTGATTGTCGTACTTTGTAACTATTTATGAAGTTGAATGAGGTCTTGAATATACTGGTATATTATGTGAAATCAAAAAACCACCACAAAGGAAGGGAAGTTTACGCCCAACTTTTGCTGTGGTTTACTTAAGCAATAAGCCCCGAGGAGGTGTTTGTATATGTTCTTATGCATGACACAACGCGgggtgcctggacacagcccttagccgtggtatattggccatatatcacaaacccacgaggtgccttactgctattatgaACTGGTTGCCAATGTAATTAGAGAAGTAAAactacatgttttgtcatacccgtggtaaatggtatgatataccacagctgtcagccaatcagcgttcagggctcgaaccaccctgtttataatttattttaaatggAGTGAGCTTCTTTGAAGCATTTTACTGCATTTTCTTGAGACCGAGAGAATATCACTGAGCGATGTAAATGAACAAGAGGGCCTTTTAGTTTCTTTATTTAGTCTTATATTAAACGACCATGTGATGGGAAAGATTTATACTCCTAT
>XM_021568364.2
TTTAATACCTGCACGAGCCTCCGCTCCTTCATTCCATGACAAAATAATTGTTGAGACCAGGCTTAACAACTGCACAACATAAAAGGATCTCATTGTTCCCTGCTTGGTGACTTTGGAGAGGCTTGGATACCACTGCTTTTGCACAGACATTTTGTGAGTCACAGCGggagttttgtgtgtgtggaagtCGCATTTACCGCAGTACCTGTTCCATTCCGACGGCCGAGGTTCTGTCCTACCCAGCACCGTCGCCAGTGTGAAGCCTGCCTAAACTCAGCACCGAGAGGTCCGGCTCCCAGACCAGCACCCTGAACATGagacagctgtgtgtctgtgtgtctgtcctgctAGCCTTGGCCACCATGGCTGTGGCTAGGCCTAAAGAAGGACCGGAGCAGAAGTGCAAGTCTGGCCCAGTGGacctcatgttcattattgacAGCTCTCGAAGTGTGCGGCCCCACGAGTTTGAGTCCATGCGCAAGTTCATGATTGACATCATCCACACGCTGGACATGGAGGCGAATGCCACCCGAGTGGGCGTGGTGCAGTACTCCAGCCAGGTCCAGAACGAATTCTCTCTCAAGACCCATAGCAAGCTGCAGGGCATGGTGAAAGGCATCAATGAGATCGTCCCCCTGGCGCAGGGCACCATGACGGGCCTGGCCATCAAGTACGTCATGAACCATGCCTTCACGGCAGCCGAGGGCGACCGACCCAAGGTGCCCAATGTGGCCGTCATCGTAACGGACGGGCGGCCCCAGGACCGCGTGGCGGAGGTAGCAGCCGAGGCTCGAGACAAGGGAATCGAGATCTATGCGGTGGGCGTTGCTCGGGCGGATATGACCTCGCTGCGTGCTATGGCGTCGCCGCCCATCGAGGACCATGTCTTCCTGGTGGAGTCTTTTGACCTGATCTACCAGTTTGGCCTGCAGTTCCAGGACAAGCTCTGCGCCATAGACCCGTGTGCTGGGGGGAAGCATGACTGTGAGCAGATCTGTATCCCCTCCCCTGGAGCTTTCACCTGCGGCTGCAACACCGGCTACACCCTCAACGACGACAAGAAGACCTGCACAATGATAGACATGTGTGCTGAGGGGAAGCATGACTGTGAGCAGATCTGTATCACCTCTCTGGGCACATTCACCTGCAACTGCAATACTGGCTACACCCTCAACGATGACAAGATTACCTGCACAATGATAGACCCGTGTGCTGAGGAGAAGCATGACTGTGAGCAGATCTGTATCCCCTCCCCTGGAGCCTTCACCTGTGACTGCAGCGCTGGCTTTAAGCTCCACGATGACAAGAAGACCTGCACAAACCTGTGTAACACAGTGGAGCATGGCTGTGAGCACCAGTGTATCAGTACACCAGACTCCTACTACTGCATCTGCCCTGAGGGACAGCTACTGGCGGAGGATGGCAAGGGCTGCCGAACCTGCAGATCGGCCAACATTGACCTGGTCCTCCTCATCGATGGCTCCAAGAGCGTGCGTCCCCAGAACTTTGAGCTGGTCAAGCAGTTTGTCAACCAGGTGGTGGACTCCCTGGATGTGTCCGCCCATGGGACTCGAGTGGGCCTAGTGCAGTACTCCAGCCACGTGCGCACAGAGTTCGCCCTCAAAATGTACGAGAAGGCAGATAACATCAAGAAGGCGGTGATGAACGTGGAGTACATGGAGAAGGGCACCATGACGGGCCTGGCCCTCAAGCACATGATGGAGAACAGCTTCTCGGAGGCCGAGGGTGCCCGCAAGAACATCCCTCGCGTGGGCCTGGTCTTCACTGACGGCCGCTCTCAGGACGACATCACTGAGTGGGCCAAGAAGGCCAAAGAAGAAGGAATCACCATGTATGCTGTTGGTGTTGGGAAGGCCGTGGAGGATGAGCTGCGTGAGATTGCCTCAGAGCCACTAGACAAGCACTTCTTCTATACCACTGACTTCACTTTCATCAACCAGATAGCCGAGAACCTCAAGCTCAATGTCTGTGCAGaggagagccagggagagCTTGAGGTGAAAGACCCATGTGCCTGTGAGAGTCTGGTTGAGTTCCAGCAAGCAACAATGTCCACTCTGGAGCAGCTGAAAACAAAACTGGCGGGTATGACTGCACAATTGGAGGACATGGAGAACCAGCTGCTGTCACGAAAATGAGGGATGTCATTCAAGTAACCCAACAAGAATAAGGAGATGCTTTGAGCATAGAATCATTTTCCTGTCAAGAATGTAAAAGTAAAAACACAAGTCCTATCA
>XM_021568365.2
TTTAATACCTGCACGAGCCTCCGCTCCTTCATTCCATGACAAAATAATTGTTGAGACCAGGCTTAACAACTGCACAACATAAAAGGATCTCATTGTTCCCTGCTTGGTGACTTTGGAGAGGCTTGGATACCACTGCTTTTGCACAGACATTTTGTGAGTCACAGCGggagttttgtgtgtgtggaagtCGCATTTACCGCAGTACCTGTTCCATTCCGACGGCCGAGGTTCTGTCCTACCCAGCACCGTCGCCAGTGTGAAGCCTGCCTAAACTCAGCACCGAGAGGTCCGGCTCCCAGACCAGCACCCTGAACATGagacagctgtgtgtctgtgtgtctgtcctgctAGCCTTGGCCACCATGGCTGTGGCTAGGCCTAAAGAAGGACCGGAGCAGAAGTGCAAGTCTGGCCCAGTGGacctcatgttcattattgacAGCTCTCGAAGTGTGCGGCCCCACGAGTTTGAGTCCATGCGCAAGTTCATGATTGACATCATCCACACGCTGGACATGGAGGCGAATGCCACCCGAGTGGGCGTGGTGCAGTACTCCAGCCAGGTCCAGAACGAATTCTCTCTCAAGACCCATAGCAAGCTGCAGGGCATGGTGAAAGGCATCAATGAGATCGTCCCCCTGGCGCAGGGCACCATGACGGGCCTGGCCATCAAGTACGTCATGAACCATGCCTTCACGGCAGCCGAGGGCGACCGACCCAAGGTGCCCAATGTGGCCGTCATCGTAACGGACGGGCGGCCCCAGGACCGCGTGGCGGAGGTAGCAGCCGAGGCTCGAGACAAGGGAATCGAGATCTATGCGGTGGGCGTTGCTCGGGCGGATATGACCTCGCTGCGTGCTATGGCGTCGCCGCCCATCGAGGACCATGTCTTCCTGGTGGAGTCTTTTGACCTGATCTACCAGTTTGGCCTGCAGTTCCAGGACAAGCTCTGCGTGATAGACATGTGTGCTGAGGGGAAGCATGACTGTGAGCAGATCTGTATCACCTCTCTGGGCACATTCACCTGCAACTGCAATACTGGCTACACCCTCAACGATGACAAGATTACCTGCACAATGATAGACCCGTGTGCTGAGGAGAAGCATGACTGTGAGCAGATCTGTATCCCCTCCCCTGGAGCCTTCACCTGTGACTGCAGCGCTGGCTTTAAGCTCCACGATGACAAGAAGACCTGCACAAACCTGTGTAACACAGTGGAGCATGGCTGTGAGCACCAGTGTATCAGTACACCAGACTCCTACTACTGCATCTGCCCTGAGGGACAGCTACTGGCGGAGGATGGCAAGGGCTGCCGAACCTGCAGATCGGCCAACATTGACCTGGTCCTCCTCATCGATGGCTCCAAGAGCGTGCGTCCCCAGAACTTTGAGCTGGTCAAGCAGTTTGTCAACCAGGTGGTGGACTCCCTGGATGTGTCCGCCCATGGGACTCGAGTGGGCCTAGTGCAGTACTCCAGCCACGTGCGCACAGAGTTCGCCCTCAAAATGTACGAGAAGGCAGATAACATCAAGAAGGCGGTGATGAACGTGGAGTACATGGAGAAGGGCACCATGACGGGCCTGGCCCTCAAGCACATGATGGAGAACAGCTTCTCGGAGGCCGAGGGTGCCCGCAAGAACATCCCTCGCGTGGGCCTGGTCTTCACTGACGGCCGCTCTCAGGACGACATCACTGAGTGGGCCAAGAAGGCCAAAGAAGAAGGAATCACCATGTATGCTGTTGGTGTTGGGAAGGCCGTGGAGGATGAGCTGCGTGAGATTGCCTCAGAGCCACTAGACAAGCACTTCTTCTATACCACTGACTTCACTTTCATCAACCAGATAGCCGAGAACCTCAAGCTCAATGTCTGTGCAGaggagagccagggagagCTTGAGGTGAAAGACCCATGTGCCTGTGAGAGTCTGGTTGAGTTCCAGCAAGCAACAATGTCCACTCTGGAGCAGCTGAAAACAAAACTGGCGGGTATGACTGCACAATTGGAGGACATGGAGAACCAGCTGCTGTCACGAAAATGAGGGATGTCATTCAAGTAACCCAACAAGAATAAGGAGATGCTTTGAGCATAGAATCATTTTCCTGTCAAGAATGTAAAAGTAAAAACACAAGTCCTATCA

Function

NR:

description
matrilin-4-like isoform X2

GO: NA

KEGG:

id description
K19467 MATN; matrilin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036949843.1 False 3818 mRNA 0.47 13 36910525 36953324
XM_021568364.2 False 2261 mRNA 0.55 12 36911959 36953324
XM_021568365.2 True 2138 mRNA 0.54 11 36911959 36953324
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110493176 LOC106565052 coding downstream 246 36906983 ~ 36910279 (-)
LOC118940421 NA coding downstream 29943 36879258 ~ 36880582 (-)
cpne1 LOC106565032 coding downstream 38140 36807147 ~ 36872385 (-)
LOC110493847 LOC106565031 coding downstream 38145 36857428 ~ 36872380 (-)
dynlrb1 LOC106565026 coding downstream 223926 36681034 ~ 36686599 (-)
LOC110493851 LOC106565035 coding upstream 46984 37000017 ~ 37002560 (-)
LOC110493854 ywhaz coding upstream 89604 37042928 ~ 37053260 (-)
LOC110493856 NA coding upstream 111905 37065229 ~ 37067085 (-)
angpt4 LOC106565038 coding upstream 130647 37083971 ~ 37128501 (-)
tmem74b LOC106565039 coding upstream 310618 37263942 ~ 37295244 (-)
G1444613 NA non-coding downstream 17967 36892344 ~ 36892558 (-)
G1444611 NA non-coding downstream 25965 36884299 ~ 36884560 (-)
G1444607 NA non-coding downstream 33405 36875331 ~ 36877120 (-)
G1444534 NA non-coding downstream 172480 36736395 ~ 36738045 (-)
G1444519 NA non-coding downstream 246540 36663744 ~ 36663985 (-)
G1444681 NA non-coding upstream 43250 36996574 ~ 36996898 (-)
G1444683 NA non-coding upstream 45079 36998403 ~ 36998621 (-)
G1444684 NA non-coding upstream 49806 37003130 ~ 37003411 (-)
G1444689 NA non-coding upstream 60339 37013663 ~ 37013922 (-)
G1443835 NA other downstream 613260 36296932 ~ 36297265 (-)
LOC118940419 LOC103395674 other downstream 623040 36287181 ~ 36287741 (-)
G1443821 NA other downstream 736474 36170870 ~ 36174051 (-)
LOC118940405 slc29a1 other downstream 796143 36087429 ~ 36123409 (-)
G1444775 NA other upstream 215657 37153825 ~ 37170504 (-)
G1446798 NA other upstream 1895441 38848765 ~ 38849084 (-)
G1447184 NA other upstream 2000930 38954254 ~ 39011535 (-)
LOC110493879 NA other upstream 2479305 39432200 ~ 39435824 (-)
manbal manbl other upstream 2916691 39868935 ~ 39872022 (-)

Expression

LOC110493849(LOC106582652) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 6.
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LOC110493849(LOC106582652) Expression in each Bioproject

Bar chart with 13 bars.
LOC110493849(LOC106582652) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 25.
End of interactive chart.

Co-expression Network