LOC118940100


Basic Information

Item Value
gene id LOC118940100
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 37302882 ~ 37307944 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005036702.1
GGTGACTCCAGGTTTGGATGGACTGCCATGGATGGACTTTGGATGGTGGGAATGGTGGGAAGACAATCTGAAGGTAATTATCGTTGCACACAACGGTAGCGTCCAGGCCTCCAGAGTTCTCACCCTATCGCCTGATGTACGGACAGGAGCCACAGCTGTTTACTGAGATGTGTCAAACCAGATCAGAACACCTTCGAGGACCACCTTCAGGCATGGGATGAGAAGGATGTGGAGATTTTTGACCAGGTGAGACTGTACATGGACAAGGCACAGGAGAAACAGAAGGAAAGCCACCAGATGAGAATCAAGGGGACCAAGTGCTTCGACATCCGGGCAAATGACTTGGCTTGGAAGAAGGACAAAAGGAAGGCGAGACCTGGGAAACCTTGCTGCTCTTTCGCTTCTAGCTGGGGTCCCCATCCGTTAAGGCTAGAGACCATGTTGCGGAGCCTTCGGTGGGCAAGCGGTCATTTGATTGATGAAGAGGTGGCCAGCAATCTAATTGCTGTTGCAGGGGAGTTCCTGCAAGAGGCAAATTACATCAACAACGGGAACCTTACC

Function

NR:

description
PREDICTED: uncharacterized protein LOC106580378

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005036702.1 True 561 mRNA 0.52 4 37302882 37307944

Neighbor

gene id symbol gene type direction distance location
LOC118940423 NA coding upstream 1067 37295322 ~ 37301815 (+)
LOC118940422 NA coding upstream 190520 37111252 ~ 37112362 (+)
LOC110493852 spag1 coding upstream 269745 37029581 ~ 37033137 (+)
rbpjl LOC106565033 coding upstream 324240 36951171 ~ 36978642 (+)
LOC110493846 NA coding upstream 500583 36795839 ~ 36802299 (+)
LOC110493859 LOC106565040 coding downstream 1768 37309712 ~ 37319725 (+)
LOC110493860 NA coding downstream 70465 37378409 ~ 37392533 (+)
chd6 NA coding downstream 98982 37406926 ~ 37514061 (+)
rbl1 rbl1 coding downstream 230276 37538220 ~ 37588797 (+)
LOC110493179 pigu coding downstream 1037664 38345608 ~ 38365362 (+)
G1444823 NA non-coding upstream 52638 37249992 ~ 37250244 (+)
G1444820 NA non-coding upstream 54004 37248162 ~ 37248878 (+)
G1444382 NA non-coding upstream 92019 37189882 ~ 37210863 (+)
G1444331 NA non-coding upstream 114393 37168836 ~ 37188489 (+)
G1444367 LOC106565038 non-coding upstream 174392 37127664 ~ 37128490 (+)
G1444916 NA non-coding downstream 203386 37511330 ~ 37519969 (+)
G1444980 NA non-coding downstream 222537 37530481 ~ 37530685 (+)
G1444983 NA non-coding downstream 229149 37537093 ~ 37537332 (+)
G1444198 LOC106565031 other upstream 441873 36857566 ~ 36861009 (+)
LOC110493174 LOC106582647 other upstream 745111 36492282 ~ 36557771 (+)
G1443844 NA other upstream 927508 36331235 ~ 36375374 (+)
LOC118940407 NA other upstream 1062157 36234292 ~ 36242642 (+)
G1443251 NA other upstream 1551092 35746872 ~ 35751790 (+)
G1444933 NA other downstream 94253 37402197 ~ 37402492 (+)
G1446149 NA other downstream 1001185 38309129 ~ 38310864 (+)
pmepa1 pmepa1 other downstream 2035083 39342991 ~ 39426900 (+)

Expression


Co-expression Network