LOC110493859 (LOC106565040)


Basic Information

Item Value
gene id LOC110493859
gene name LOC106565040
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 37309712 ~ 37319725 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021568382.2
cgCTTACTATTATGCGTAAAACACGTTCCGTGTGTTCGAAGCGTAACCATTTTAAACTGCAATGGGGGGTGTAGGGAAGTCCCAAGTATCCATCATAGTACGGACCGTCGTCTACTCTTAAGGCAGCAGCAATGGAGTCGAGTAGTGTGCTCGAGCAAGAATGAACCTGGAAATTGGCCCGACCTGAAGGTAACAGATTACAACCTGCTCCGACGTCACAACTGCGATGGTTAGGAAACCCCACTGTGTCATTCCACCCAGCCCTGTGGCCACCTGATTAAGCTTGGTGTGTGTTTGCCTTCCCCTCAAAGACGATGTACTGCCTTCAGTGGTTGCTCCCGGTTCTCCTCATCCCGAAACCTCTGAACCCGGCTTTATGGTTCAACCACTCAATGTTCATGGGCTTCTACCTGCTCAGCTTCCTGCTGGAGAGGAAGCCATGTACCATTTGTGCCTTAGTGTTCCTGGCAGCTCTGTTTTTCATCTGCTACAGCTGCTGGGGGAACTGTTTTCTGTACCACTGCCATGACTCCGCACTACCAGATTGTGCACACGACCCCAGCATTGTGGGCACCTAAGAGGATTCTCCGTGACGTGATGCGCAGATGGATCCTGGACAATATGTATCTAGGCTGTGAATAAAATCTCCCACCTGACACTGTCCATGTGGAGAAACATAGACTTCATCCTGATTCTCATCCCCTCGACCCTTTGTGTGCACTTGTTCACGTCTCTTAATGGATTTAAAAGGAATTGACTGGTGTATGAAATATGGTTACTCCCCCATGCATACACCAGTCCACTGCTTTTAAATGTGTGGGCATGTGTACACTTCCCAGAGAATAGCCTACCCTACCCTCCTCACTACTGCCCTCCACCCCTGCCTTTTCCCCCTGTTTTTTTAGTGAATGTCGCCTACCCTGGCCTCATTGGATCTAAACGTTTGCATGGGTTGCCTTTTTTAGAGTTTTCAAAAGTCGTGTTAATACATATGTTTTAATTACAGAAATCTGAAAGTTTCCAAAGGGTAGAAATCAAATGTGTTGTTCGTGTGAAAATGCTGACTATCAGTATAAGTTACAGTAGCAGGAAGGTGAACATGAAAATCCTGCTTCCCTGTTGAGCTTTGGACGTCAAGAGGAGGCGAGTGATGTGAATCTGTTAtctagagtgccttcagaaaatattcataccgcttcacttactccacattttgttgtattacagcctgaattcaaaatggattaaataaaacctcacccatctatacacaataccccataatgacagttagaacatgtttttagaaattttacctaattaaatacagaaatatctcatttacgtaagtattcacagccctgagtcaatactttgtagaagtgCGGTTGGCAGCacttacagctgtgagtc
>XR_002469200.2
CGTGTGTTCGAAGCGTAACCATTTTAAACTGCAATGGGGGGTGTAGGGAAGTCCCAAGTATCCATCATAGTACGGACCGTCGTCTACTCTTAAGGCAGCAGCAATGGAGTCGAGTAGTGTGCTCGAGCAAGAATGAACCTGGAAATTGGCAGGCCCGACCTGAAGGTAACAGATTACAACCTGCTCCGACGTCACAACTGCGATGGTTAGGAAACCCCACTGTGTCATTCCACCCAGCCCTGTGGCCACCTGATTAAGCTTGGTGTGTGTTTGCCTTCCCCTCAAAGACGATGTACTGCCTTCAGTGGTTGCTCCCGGTTCTCCTCATCCCGAAACCTCTGAACCCGGCTTTATGGTTCAACCACTCAATGTTCATGGGCTTCTACCTGCTCAGCTTCCTGCTGGAGAGGAAGCCATGTACCATTTGTGCCTTAGTGTTCCTGGCAGCTCTGTTTTTCATCTGCTACAGCTGCTGGGGGAACTGTTTTCTGTACCACTGCCATGACTCCGCACTACCAGATTGTGCACACGACCCCAGCATTGTGGGCACCTAAGAGGATTCTCCGTGACGTGATGCGCAGATGGATCCTGGACAATATGTATCTAGGCTGTGAATAAAATCTCCCACCTGACACTGTCCATGTGGAGAAACATAGACTTCATCCTGATTCTCATCCCCTCGACCCTTTGTGTGCACTTGTTCACGTCTCTTAATGGATTTAAAAGGAATTGACTGGTGTATGAAATATGGTTACTCCCCCATGCATACACCAGTCCACTGCTTTTAAATGTGTGGGCATGTGTACACTTCCCAGAGAATAGCCTACCCTACCCTCCTCACTACTGCCCTCCACCCCTGCCTTTTCCCCCTGTTTTTTTAGTGAATGTCGCCTACCCTGGCCTCATTGGATCTAAACGTTTGCATGGGTTGCCTTTTTTAGAGTTTTCAAAAGTCGTGTTAATACATATGTTTTAATTACAGAAATCTGAAAGTTTCCAAAGGGTAGAAATCAAATGTGTTGTTCGTGTGAAAATGCTGACTATCAGTATAAGTTACAGTAGCAGGAAGGTGAACATGAAAATCCTGCTTCCCTGTTGAGCTTTGGACGTCAAGAGGAGGCGAGTGATGTGAATCTGTTAtctagagtgccttcagaaaatattcataccgcttcacttactccacattttgttgtattacagcctgaattcaaaatggattaaataaaacctcacccatctatacacaataccccataatgacagttagaacatgtttttagaaattttacctaattaaatacagaaatatctcatttacgtaagtattcacagccctgagtcaatactttgtagaagtgCGGTTGGCAGCacttacagctgtgagtc
>XM_036949847.1
CACACTGTGTATATTTAGAGTTTAAGTCAGACACCATTTTAGTCAGGACAATCTCCTCTTTGTAATAAAGTAAGTCTGGGCAGCGAGCTCGGTGGTCGTTGATCACTAGACCAGAAAGAGTCTAGAGTTTTCATTTTTTCCCTACTTCCTCATTACGCAGACATGCTCAGTCGACACCATCAAGGTGCGGTTtgtttactttctacacaagtaatttttttcagtTTCATCCTAAGAAACTTGTAGTGGTAAAATAGAAagggataaaaaaaaatctgccatttaggggaaatggaattctaagcatcacTTCAGTCAGAGGCTCTGCGACGGTTTGTTTCAATTCAATTTCTATGGCCTCGCGCTAGTGTTCCAAGCTCAGCCAACTTCTTCTTTGGCCCTTTTTCAAGCCTTTGGTGAGTTTTGACTCATTCTATTGTCTATTGTCATTCTATTGTCCAGCCTAGTTCTGGTTTACGTTACTTCGTTGTAGAGAATCTTCTCAGGAACACAAGACTTAATTTCGTGAGGGTAGGACTTTGATTAGATCTTATTTTCAAGTTATCGGAAAAGGTCAAAAAGGTCGCAGAAAGATCAATGTTAATCATGAGTCAATAATGGCATCAAATCACCTGTCTGGTTTCTTAAATGAAACACGTTTTGACCAAGGAAAAGAGTTGCTACTTTAaagcatctcaaatataaaatatattttaagttTTGTTTTGTTACTAAATTattgcatatgtgttatttcatagttttgatgtccaaacttttcacttgTACAGTATATATCTAGCTATGGCTCTACAAAAAAAATCCCGGTCTACCAGCAGCCTATCACTGACGaattggggtcagccctactTCAAAGGCCCGACCTGAAGGTAACAGATTACAACCTGCTCCGACGTCACAACTGCGATGGTTAGGAAACCCCACTGTGTCATTCCACCCAGCCCTGTGGCCACCTGATTAAGCTTGGTGTGTGTTTGCCTTCCCCTCAAAGACGATGTACTGCCTTCAGTGGTTGCTCCCGGTTCTCCTCATCCCGAAACCTCTGAACCCGGCTTTATGGTTCAACCACTCAATGTTCATGGGCTTCTACCTGCTCAGCTTCCTGCTGGAGAGGAAGCCATGTACCATTTGTGCCTTAGTGTTCCTGGCAGCTCTGTTTTTCATCTGCTACAGCTGCTGGGGGAACTGTTTTCTGTACCACTGCCATGACTCCGCACTACCAGATTGTGCACACGACCCCAGCATTGTGGGCACCTAAGAGGATTCTCCGTGACGTGATGCGCAGATGGATCCTGGACAATATGTATCTAGGCTGTGAATAAAATCTCCCACCTGACACTGTCCATGTGGAGAAACATAGACTTCATCCTGATTCTCATCCCCTCGACCCTTTGTGTGCACTTGTTCACGTCTCTTAATGGATTTAAAAGGAATTGACTGGTGTATGAAATATGGTTACTCCCCCATGCATACACCAGTCCACTGCTTTTAAATGTGTGGGCATGTGTACACTTCCCAGAGAATAGCCTACCCTACCCTCCTCACTACTGCCCTCCACCCCTGCCTTTTCCCCCTGTTTTTTTAGTGAATGTCGCCTACCCTGGCCTCATTGGATCTAAACGTTTGCATGGGTTGCCTTTTTTAGAGTTTTCAAAAGTCGTGTTAATACATATGTTTTAATTACAGAAATCTGAAAGTTTCCAAAGGGTAGAAATCAAATGTGTTGTTCGTGTGAAAATGCTGACTATCAGTATAAGTTACAGTAGCAGGAAGGTGAACATGAAAATCCTGCTTCCCTGTTGAGCTTTGGACGTCAAGAGGAGGCGAGTGATGTGAATCTGTTAtctagagtgccttcagaaaatattcataccgcttcacttactccacattttgttgtattacagcctgaattcaaaatggattaaataaaacctcacccatctatacacaataccccataatgacagttagaacatgtttttagaaattttacctaattaaatacagaaatatctcatttacgtaagtattcacagccctgagtcaatactttgtagaagtgCGGTTGGCAGCacttacagctgtgagtc
>TU1653903
TAGTACGGACCGTCGTCTACTCTTAAGGCAGCAGCAATGGAGTCGAGTAGTGTGCTCGAGCAAGAATGAACCTGGAAATTGGCCCGACCTGAAGGTAACAGATTACAACCTGCTCCGACGTCACAACTGCGATGGTTAGGAAACCCCACTGTGTCATTCCACCCAGCCCTGTGGCCACCTGATTAAGCTTGGTGTGTGTTTGCCTTCCCCTCAAAGACGATGTACTGCCTTCAGTGGTTGCTCCCGGTTCTCCTCATCCCGAAACCTCTGAACCCGGCTTTATGGTTCAACCACTCAATGTTCATGGGCTTCTACCTGCTCAGCTTCCTGCTGGAGAGGAAGCCATGTACCATTTGTGCCTTAGTGTTCCTGGCAGCTCTGTTTTTCATCTGCTACAGCTGCTGGGGGAACTGTTTTCTGTACCACTGCCATGACTCCGCACTACCAGATTGTGCACACGACCCCAGCATTGTGGGCACCTAAGAGGATTCTCCGTGACGTGATGCGCAGATGGATCCTGGACAATATGTATCTAGGCTGTGAATAAAATCTCCCACCTGACACTGTCCATGTGGAGAAACATAGACTTCATCCTGATTCTCATCCCCTCGACCCTTTGTGTGCACTTGTTCACGTCTCTTAATGGATTTAAAAGGAATTGACTGGTGTATGAAATATGGTTACTCCCCCATGCATACACCAGTCCACTGCTTTTAAATGTGTGGGCATGTGTACACTTCCCAGAGAATAGCCTACCCTACCCTCCTCACTACTGCCCTCCACCCCTGCCTTTTCCCCCTGTTTTTTTAGTGAATGTCGCCTACCCTGGCCTCATTGGATCTAAACGTTTGCATGGGTTGCCTTTTTTAGAGTTTTCAAAAGTCGTGTTAATACATATGTTTTAATTACAGAAATCTGAAAGTTTCCAAAGGGTAGAAATCAAATGTGTTGTTCGTGTGAAAATGCTGACTATCAGTATAAGTTACAGTAGCAGGAAGGTGAACATGAAAATCCTGCTTCCCTGTTGAGCTTTGGACGTCAAGAGGAGGCGAGTGATGTGAATCTGTTAtctagagtgccttcagaaaatattcataccgcttcacttactccacattttgttgtattacagcctgaattcaaaatggattaaataaaacctcacccatctatacacaataccccataatgacagttagaacatgtttttagaaattttacctaattaaatacagaaatatctcatttacgtaagtattcacagccctgagtcaatactttgtagaagtgCGGTTGGCAGCacttacagctgtgagtctttctgtgtatctttccacacctggattgtgcaatatttgcccataattattttcaaaattcttcaagcgctTTCAAGTTAgtagttgatcattgctagacaaccatcatagattttcaagtagattcaagtccgaactgtaactctgccactcggaaacattcactgtcttcctgGTAGGCtattccagtgtagatttggccttgtgttttaggttattgtcctgctgaaaggtgaattaatctcccagtgtctggtggaaagcagactgaaccaggtcttcctctagaattttgcctgtgcttagctccattccatttatttttaatcGGGAAAAACTccccccagtccttaacgattacaagcatacccataacatgatggagccaccactatgcttgaaaatatagagaATGTTACtcattaatgtgttgtattggatttgccccaaacgttacactttgtattcaggacaaacagTTAATTGCTTTCCCCACATTTTTTGCAGGCAAacttttagtgccttgttgcaaacatgacagatgttttggaatatttgtattctgtacaggcttccttccttcaattaggttagtattgcagAGTAACTAGAAGAAAATtgtatcacagccattaaactcttaacTCTTCAGGTCAATGGCTCATGGAGACAtacctgagcggtttccttcctctccgtcaacCTGACTTAGGAAGGCTGCCCGTATCTCTGTAGTGATTGGGCGCATTGATACACCATTCGACGTGTAATTAATAACGTCGCCATGCTGAAAGggatctaccaataggttccctttgcgaggcattggaaaacctccctggtctttggttgATTTatgttttgaaattcactgcgcGACTGAATGACCATACGCATACAGAatgatctgtatgtgtggggtacagagatgaggtagtcattaaaaaatcatgttaaacaatatTATTGCATACAGTCCATGCAATGtatatgacttgttaagcacatttttaatgtatttttattttatttgtgctGTAACaacaatgtgtaaaaagtcaatgggtatgaatactttctgaaggtgctgtATGTCACTTCTGCAGAGTTCAAATGCTACTACTGCTTTTCATTTAATAAAGTTCACCCTCTGAAGGTGTTATCACACTGAGCATGATGCTGTGGCCTTGTTTTCTCAGTTCTTCTAGGCTTCATATCGACTTCCAAGTGTTATCAGTTGCCCACTATCTGCATTTGCGAAGGCGAGAACCCCATGCCCAAGACCGAAAAATGAAAATACTAATTTGCTGAAAATAACAATTTGATTTTTGAGATTTCACAGAATCATAATATTTGAAAAGACAAAAGTTTGCTTTTATAAAGTTTTGTAACTTGTCATTGAAATGTGTACAGTATACTAATGCTGTCTGCTGCTGGAGGGATATTAACTGATTATTTTCAGTTGGGCCATAAAGAAACTGCTGGACAAGATAATGAGCTCTTAATCAAAATGTTTTGGGATTATTTTTAACTCCAGCACGGTGTGATACCTATCAGGGAAAGTTCACCATTTTGAAGCTGGCTATCCTGTGAACCACAGACCACACGAAATGTGAGAACTTTTGACAATGAAACTTAAGTTAATTATATTATGTTCTGTTGCTGTAGCAAATTACATTGTTTGCCATTAAGAGGTTAGGTCATCAGTCTGGATTTGCTCTTTCATGAAAATGTTGCTGCCAATTTTATTTATAGGATATATTCAATATGTGGGAGGTTTGTAAATGCAAATAGTTATTTTGGCTTTGTTAGTCATTCTGTTCTAATCTTTTTTGGCTTGTAATTAGCTCATTGTGCTTTTTAATACCTTTACACACCTTTTAGTGTGGTATATCTAGTAATTACATCCAATGTCATTTCTACATATAGATGTAAATAAACAAAGATGGAGCTTTTCACTGTAATGCACAGGGAGTGAGTATTTTGTTCAAAGGGAG

Function

NR:

description
bladder cancer-associated protein-like

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021568382.2 False 1413 mRNA 0.45 2 37309712 37317703
XR_002469200.2 False 1389 mRNA 0.45 2 37309740 37317703
XM_036949847.1 False 2114 mRNA 0.42 2 37314685 37317703
TU1653903 True 3316 lncRNA 0.40 3 37309807 37319725

Neighbor

gene id symbol gene type direction distance location
LOC118940100 NA coding upstream 1768 37302882 ~ 37307944 (+)
LOC118940423 NA coding upstream 7897 37295322 ~ 37301815 (+)
LOC118940422 NA coding upstream 197350 37111252 ~ 37112362 (+)
LOC110493852 spag1 coding upstream 276575 37029581 ~ 37033137 (+)
rbpjl LOC106565033 coding upstream 331070 36951171 ~ 36978642 (+)
LOC110493860 NA coding downstream 60706 37378409 ~ 37392533 (+)
chd6 NA coding downstream 89223 37406926 ~ 37514061 (+)
rbl1 rbl1 coding downstream 220517 37538220 ~ 37588797 (+)
LOC110493179 pigu coding downstream 1027905 38345608 ~ 38365362 (+)
osgn1 LOC106565048 coding downstream 1072430 38390133 ~ 38405953 (+)
G1444823 NA non-coding upstream 59468 37249992 ~ 37250244 (+)
G1444820 NA non-coding upstream 60834 37248162 ~ 37248878 (+)
G1444382 NA non-coding upstream 98849 37189882 ~ 37210863 (+)
G1444331 NA non-coding upstream 121223 37168836 ~ 37188489 (+)
G1444367 LOC106565038 non-coding upstream 181222 37127664 ~ 37128490 (+)
G1444916 NA non-coding downstream 193627 37511330 ~ 37519969 (+)
G1444980 NA non-coding downstream 212778 37530481 ~ 37530685 (+)
G1444983 NA non-coding downstream 219390 37537093 ~ 37537332 (+)
G1445015 NA non-coding downstream 275088 37592791 ~ 37593001 (+)
G1444198 LOC106565031 other upstream 448703 36857566 ~ 36861009 (+)
LOC110493174 LOC106582647 other upstream 751941 36492282 ~ 36557771 (+)
G1443844 NA other upstream 934338 36331235 ~ 36375374 (+)
LOC118940407 NA other upstream 1068987 36234292 ~ 36242642 (+)
G1443251 NA other upstream 1557922 35746872 ~ 35751790 (+)
G1444933 NA other downstream 84494 37402197 ~ 37402492 (+)
G1446149 NA other downstream 991426 38309129 ~ 38310864 (+)
pmepa1 pmepa1 other downstream 2025324 39342991 ~ 39426900 (+)

Expression


Co-expression Network