XLOC_033276 (ppp1r16b)


Basic Information

Item Value
gene id XLOC_033276
gene name ppp1r16b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 59370821 ~ 59388625 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00064581
TGGTGCTGATCTGCTAGCAGTGAACTCTGACGGGAACATGCCCTATGACCTCTGTGAGGACGACCCTACGCTGGACATCATCGAGACCGCCATGGCCAACAGAGGCATCACGCAGGAGATGATCAATGAGACGAGAGCGGCAGTGGAGCGGAGCATGCTGGGAGATATTCAGAAGATCCTGCAGGAGGGAGCGGACGTCAACCATCACGACTCACAGGGGGCCACGCTGctgcACATCGCATCAGCAAACGGTTATACTCAGGCTGCAGAGCTGCTCTTAGACGCCGGAGCTCGATCAGACATGAGAGACTCAGACGGATGGACACCACTGCACGCTGCTGCATGCTGGGGAcagGTTCAAGTGGCGGAGCTGCTGGTTTCTCATGGAGCCAGTCTGAACGCCAAGACCTACATGGAGGAGACGCCTATagaTCTGTGTGAGGATGAGGAGTTCAGGAATCATCTTCTGGAGCTGAAGCACAAACACGACATCATCATGAAGTCACAACTGAAGCACAAAACGTCACTGTGCCGCAGAACCAGCAGCGCAGGCAGCCgcggGAAAGTGGTGCGGCGGGCGAGTCTCTCCGACAGACACAATCTGTGCAGGAAAGAGTATCAGACTGAAGCCATCGTGTGGAGAGGAGGACGAGAAAAAGAAGAACGAGAGCGAGAGTCTGACCAGGAGAACAGCCAcacgatgcaGCCTACTGAGGGCCCTCAATCTCCAGGCATCCTGAAAGACAGTGGACAGAATGGCTGTATCTCCAGTCCATCTCCAAACGGTGACCCACTGACCCCTCCTGACCCCATGACCCCTCCTGTCCCCGGTGACCCTGTGACCTCCGCTGAGGAGCCCAAGCTGAAGGCTCAGACTCTGTCAGAACTGAAGAAGCAGCGATCTGCCGCCGCCGCCAAACTCCTGCATCACCCCGTCCTCAATGGTCACCTAGGCAACGGCTCCTCTAAGCCCCTCCCTGACGACCCCCGCATGCCACTCGTCTCGTCCAATGGCAGCGCGGTTTACTTCACACCTGCTAGCGGAGACCCACCCCTCCTGAGGTTCAAGCAGCCAATCGAAGAAGAGGATCCCAAGAGTCACAGCTGCTGCTGCATTGCATAGGTCTGCACCGGCCAATCACACAACCCCAAGCGCCTGATGGGCTGCAGCTCGGAGGTTTCACAAATccttggctgcgtctgaaatcacgTAAACAGGAGACACGTTACTGTCCCATAATGCAACGCCAAAGATGAGTgagagtgaagcgatgcaactgagtCACTCAGTGAATCAAACAAagcttcagtgaatcaaacacAACTTCAATGAGTCACTTAGTGAATCAAACAAAACTTCAGAGAGTCACACAGTGAATCAAACACagcttcagtgaatcaaacacAACTTCAATGAGTCACTTAGTGAATCAAACAAAACTTTAGTGAGTCACTCAGTGAATCAAACACAGCTTCAGTGAATCGTTCAGTGAATCAAACTAAACTTCAGGAATTGCTCAGTGGATCAAACACAACTTCAATGAGTCACTTAGTGAATCAAACAAAACTTCAGTGAGTCACTCAGTGAATCAAACACagcttcagtgaatcaaacacAACTTCAATGAGTCACTTAGTGAATCAAACAAAACTTTAGTGAGTCACTCAGTGAATCAAACACAGCTTCAGTGAATCGTTCAGTGAATCAAACTAAACTTCAGGAATTGCACAGTGGATCAAACACAACTTCAATGAGTCGCTCAGTGAATCAAACACagcttcagtgaatcaaacacAACTTCAATGAGTCACTTAGTGAATCAAACAAAACTTTAGTGAGTCATTCAGTGAATCAAACACAGCTTCAGTGAATCGTTCAGTGAATTAAACTAAACTTCAGGAATTGCTCAGTGGATCAAACACAACTTCAGTAAGTCACTCAGTGAATCAAAAAAAAGCTTCATTGAATCAACCACAACTTTAATGATTTGCTCAGTGAATCAAACATACCGCTTCAGTGAGTCACTCAGTGAATCAAACAACTTCAGTGAGTCATTCAGTGAATCAATCAAAACTTCAGTGAATCAAGCACACAGCTTCAGTGAGTCACTCAGTGAATCAATTTTAACTTCAGTAAGTCACTTAGTGAATCAAACACAACTTCAGTGAGTCATTCAGTGGATCAATTACAACTTCAGTGAATCATACACGGCTTCAGTGATTCGCTAAGTGAATCAAACACAACTTCAGTGATTCGCTCAGTAAATCAAACACACAGCTTCAGTGAATTGCTCAGTAAATCAAACATAGCTACAGTGAATCAAAAGCACAGCTTCGGTGAGTCACTTAGTGAATCAAACAAAGCTTCAGTGAGTCACTCAGTGAATCAAACACAGCTTATGTGAGTGACTCAGTGAATCAAACAAAGCTTCAGTGAGTCACTTAGTGAATCAGACAAAGCTTTAGTGAACCAAACACACAGTTTCGGTGAGTCACTTAGTGAATCAAACAAAGCTTCAGTGAGTCACTCAGTGAATCAAACACAGCTTCTGTGAGTCACCCAGACAATCAAACAAAGCTTCAGTGAGTCACTTAGTGAATCAAACACAGTTTAGTGAGTCACTTAGTGAATCTTACAAAGCATCAGTGAATTTAACGCAGCTTCAGCGAGTTGCTCAGTGAATCACTCAAagcttcagtgaatcaaacacACAGCTTCAGTGAGTCACTCACTGCTTCAAAAATCCCGTACAGATAGCGGCCAGATCTGCAGTGTGCATCTAATGAATCTCAGGGTGAGAGAGTTCATGATGTGAGTAAAATGTCAAATGAACTTGCAGACCCTGCATGAGTGATGTGTGATTTCAGACGCAGCTCTTCTGTGATGTTTGCAGTCCTGACCGCTCTCTGAACCTCACAGAACAGAGAAACGCTCAAGAAGAGGaaggaagtgacatcattcagGCCGTGCAGGTTGAATGTGTGAGCGATGCTTGACTTTTCCACTGATGTGTAATGTTGTACAGAAGAGAgaatctgctgtgtgtgtgtgtgtgtttgtgtgtgtgtgtacagtatttatttgtatatgtgcATAAAGCCACTGTTCTATaa
>TCONS_00064582
ataaaagagcgagatcgGTGCTCAAGTTTGCATcgatgcatcctcgatatcaagaacacatccggaaagtttcacATTCTGCTCACTCATGGTGCGACTGTAAACGCTCAGGACAACGAGCTCTGGACACCGCTGCATGCCGCAGCCACATGTGGACACACCGGCCTGGTCAAAATCCTCATCCAGCATGGTGCTGATCTGCTAGCAGTGAACTCTGACGGGAACATGCCCTATGACCTCTGTGAGGACGACCCTACGCTGGACATCATCGAGACCGCCATGGCCAACAGAGGCATCACGCAGGAGATGATCAATGAGACGAGAGCGGCAGTGGAGCGGAGCATGCTGGGAGATATTCAGAAGATCCTGCAGGAGGGAGCGGACGTCAACCATCACGACTCACAGGGGGCCACGCTGctgcACATCGCATCAGCAAACGGTTATACTCAGGCTGCAGAGCTGCTCTTAGACGCCGGAGCTCGATCAGACATGAGAGACTCAGACGGATGGACACCACTGCACGCTGCTGCATGCTGGGGAcagGTTCAAGTGGCGGAGCTGCTGGTTTCTCATGGAGCCAGTCTGAACGCCAAGACCTACATGGAGGAGACGCCTATagaTCTGTGTGAGGATGAGGAGTTCAGGAATCATCTTCTGGAGCTGAAGCACAAACACGACATCATCATGAAGTCACAACTGAAGCACAAAACGTCACTGTGCCGCAGAACCAGCAGCGCAGGCAGCCgcggGAAAGTGGTGCGGCGGGCGAGTCTCTCCGACAGACACAATCTGTGCAGGAAAGAGTATCAGACTGAAGCCATCGTGTGGAGAGGAGGACGAGAAAAAGAAGAACGAGAGCGAGAGTCTGACCAGGAGAACAGCCAcacgCCTACTGAGGGCCCTCAATCTCCAGGCATCCTGAAAGACAGTGGACAGAATGGCTGTATCTCCAGTCCATCTCCAAACGGTGACCCACTGACCCCTCCTGACCCCATGACCCCTCCTGTCCCCGGTGACCCTGTGACCTCCGCTGAGGAGCCCAAGCTGAAGGCTCAGACTCTGTCAGAACTGAAGAAGCAGCGATCTGCCGCCGCCGCCAAACTCCTGCATCACCCCGTCCTCAATGGTCACCTAGGCAACGGCTCCTCTAAGCCCCTCCCTGACGACCCCCGCATGCCACTCGTCTCGTCCAATGGCAGCGCGGTTTACTTCACACCTGCTAGCGGAGACCCACCCCTCCTGAGGTTCAAGCAGCCAATCGAAGAAGAGGATCCCAAGAGTCACAGCTGCTGCTGCATTGCATAG

Function

symbol description
ppp1r16b Predicted to enable myosin phosphatase regulator activity and protein phosphatase 1 binding activity. Predicted to be involved in establishment of endothelial barrier; regulation of protein dephosphorylation; and regulation of sprouting angiogenesis. Predicted to be active in plasma membrane. Orthologous to human PPP1R16B (protein phosphatase 1 regulatory subunit 16B).

GO:

id name namespace
GO:1903670 regulation of sprouting angiogenesis biological_process
GO:0035304 regulation of protein dephosphorylation biological_process
GO:0061028 establishment of endothelial barrier biological_process
GO:0005886 plasma membrane cellular_component
GO:0017020 myosin phosphatase regulator activity molecular_function
GO:0008157 protein phosphatase 1 binding molecular_function
GO:0019888 protein phosphatase regulator activity molecular_function

KEGG:

id description
ko01009 Protein phosphatases and associated proteins

ZFIN:

id description
ZDB-GENE-131127-294 Predicted to enable myosin phosphatase regulator activity and protein phosphatase 1 binding activity. Predicted to be involved in establishment of endothelial barrier; regulation of protein dephosphorylation; and regulation of sprouting angiogenesis. Predicted to be active in plasma membrane. Orthologous to human PPP1R16B (protein phosphatase 1 regulatory subunit 16B).

Ensembl:

ensembl_id ENSDARG00000079860

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00064581 False 3114 mRNA 0.46 7 59370821 59381391
TCONS_00064582 True 1305 mRNA 0.56 10 59372812 59388625

Neighbor

gene id symbol gene type direction distance location
XLOC_033275 fam210b coding downstream 13565 59350457 ~ 59357256 (-)
XLOC_033274 ndufa4l2b coding downstream 99385 59255136 ~ 59271436 (-)
XLOC_033273 NA coding downstream 199282 59168060 ~ 59171539 (-)
XLOC_033272 CABZ01111575.1 coding downstream 234034 59136671 ~ 59136787 (-)
XLOC_033271 NA coding downstream 301918 59066955 ~ 59068903 (-)
XLOC_033277 NA coding upstream 7222 59395847 ~ 59421470 (-)
XLOC_033278 gli1 coding upstream 37523 59426148 ~ 59505589 (-)
XLOC_033279 CABZ01117503.1 coding upstream 168876 59557501 ~ 59563597 (-)
XLOC_033280 CABZ01117510.1 coding upstream 296520 59685145 ~ 59685261 (-)
XLOC_033281 NA coding upstream 447005 59835630 ~ 59853683 (-)
XLOC_033270 NA non-coding downstream 317616 59050986 ~ 59053205 (-)
XLOC_033269 NA non-coding downstream 319993 59047907 ~ 59050828 (-)
XLOC_033283 NA non-coding upstream 585077 59973702 ~ 59974747 (-)
XLOC_033289 NA non-coding upstream 879182 60267807 ~ 60269211 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location