romo1 (romo1)


Basic Information

Item Value
gene id romo1
gene name romo1
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 38675958 ~ 38677481 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>NM_001160686.2
GCAATAAACCAAGATGCCAGTGGCAGTAGGACCGTATGGCCAGCAACAGCCAGCCTGCATTGACAGAATTAAAATGGGATTCATGATGGGCTTCGCTGTTGGGATGGCAGCTGGTGCCATGTTTGGAACCTTTTCCTGTCTAAGGGTTGGCATGAGAGGCAGAGAGCTGATGGGAGGAGTTGGGAAGACGATGATGCAGAGTGGAGGCACATTTGGTACATTTATGTCCATTGGGATGGGCATCCGCTGCTGAGACCACCTACCATACTTACTGAAAATTACATAGTGGGACTTTTGTCATAACTCATTCCCATGTCACACTTTGTCCCAGAACGATGGAGAAATTATGTCAATAAATGCTGTGATTTCAATTGCTGGTAGTAGGCCAAATGTTTGGTGTGGGGCTTTTGATAAATGGGATGACTAACCTTGTGGTGCTGCAACATTGGTACCATCCAAAGGATTGACGATACCAGGGTAGTCTCTCCCAAAGGACAGATGCTTGATAAAGTGAGTCATGTTGATCTGTAGGACAACACAAATAAGTGCTCACGTGTATGGAGAACATTGCCTGGGCAAGACAAGATTTGTCAAATGTACTTACGTTGTCTAGTCCAAAACTCTGCAGATCATGAACTGAAAATAATTTGAGACAAGATGTTAGTAATGCTGTGATAGCATCATCAGTTATGTTCTGGCAGTTATGAGGGCTTACTACTCAATCTACGACTCTCCCATTACAAGTTATAATTGTTGAGCCCTCCGAAATGTGATCTAGATTACTGCTTGTACCACCTCCAATAAAGATCAAACCAACAATCA
>TU1655459
GTTTCGCAATCCTCTCAAGTAATGGCCGCCTGTTAGTACAGCATTCCAAACTACCTAGTCTCATCGAAAAGGGGTTTCTTCTCTAGTGACCGATAACTCACATTACGCAATAAACCAAGATGCCAGTGGCAGTAGGACCGTATGGCCAGCAACAGCCAGCCTGCATTGACAGAATTAAAATGGGATTCATGATGGGCTTCGCTGTTGGGATGGCAGCTGGTGCCATGTTTGGAACCTTTTCCTGTCTAAGGGTTGGCATGAGAGGCAGAGAGCTGATGGGAGGAGTTGGGAAGACGATGATGCAGAGTGGAGGCACATTTGGTACATTTATGTCCATTGGGATGGGCATCCGCTGCTGAGACCACCTACCATACTTACTGAAAATTACATAGTGGGACTTTTGTCATAACTCATTCCCATGTCACACTTTGTCCCAGAACGATGGAGAAATTATGTCAATAAATGCTGTGATTTCAATTGCTGGTAGTAGGCCAAATGTTTGGTGTGGGGCTTTTGATAAATGGGATGACTAACCTTGTGGTGCTGCAACATTGGTACCATCCAAAGGATTGACGATACCAGGGTAGTCTCTCCCAAAGGACAGATGCTTGATAAAGTGAGTCATGTTGATCTGTAGGACAACACAAATAAGTGCTCACGTGTATGGAGAACATTGCCTGGGCAAGACAAGATTTGTCAAATGCTGTGATAGCATCATCAGTTATGTTCTGGCAGTTATGAGGGCTTACTACTCAATCTACGACTCTCCCATTACAAGTTATAATTGTTGAGCCCTCCGAAATGTGATCTAGATTACTGCTTGTACCACCTCCAATAAAGATCAAACCAACAA

Function

symbol description
romo1 Predicted to be involved in several processes, including positive regulation of reactive oxygen species metabolic process; protein targeting to mitochondrion; and replicative senescence. Predicted to act upstream of or within defense response to bacterium. Predicted to be located in mitochondrion. Predicted to be part of TIM23 mitochondrial import inner membrane translocase complex. Is expressed in several structures, including alar plate midbrain region; liver; optic tectum; optic vesicle; and retina. Orthologous to human ROMO1 (reactive oxygen species modulator 1).

NR:

description
reactive oxygen species modulator 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
NM_001160686.2 False 822 mRNA 0.44 3 38676064 38677481
TU1655459 True 853 lncRNA 0.45 4 38675958 38677478

Neighbor

gene id symbol gene type direction distance location
mtss1 LOC106565049 coding upstream 129281 38428173 ~ 38546783 (+)
osgn1 LOC106565048 coding upstream 270111 38390133 ~ 38405953 (+)
LOC110493179 pigu coding upstream 310702 38345608 ~ 38365362 (+)
rbl1 rbl1 coding upstream 1087267 37538220 ~ 37588797 (+)
chd6 NA coding upstream 1162003 37406926 ~ 37514061 (+)
raly LOC106565059 coding downstream 231908 38909389 ~ 39081461 (+)
asip1 asip coding downstream 501236 39178717 ~ 39183960 (+)
LOC110493876 NA coding downstream 542782 39220263 ~ 39225724 (+)
pmepa1 pmepa1 coding downstream 665510 39342991 ~ 39426900 (+)
ccndbp1 ccndbp1 coding downstream 823215 39500696 ~ 39521498 (+)
G1446302 NA non-coding upstream 27028 38648464 ~ 38649036 (+)
G1446294 NA non-coding upstream 45463 38630286 ~ 38630601 (+)
G1446250 NA non-coding upstream 89867 38527333 ~ 38586197 (+)
G1446219 NA non-coding upstream 292837 38383020 ~ 38383227 (+)
G1446204 NA non-coding upstream 315145 38360668 ~ 38360919 (+)
G1446547 LOC106565051 non-coding downstream 10946 38688427 ~ 38701830 (+)
G1446570 NA non-coding downstream 46581 38724062 ~ 38724352 (+)
G1446956 NA non-coding downstream 348780 39026261 ~ 39047331 (+)
G1446874 NA non-coding downstream 404323 39081804 ~ 39083444 (+)
G1446149 NA other upstream 365200 38309129 ~ 38310864 (+)
G1444933 NA other upstream 1273572 37402197 ~ 37402492 (+)
G1444198 LOC106565031 other upstream 1815055 36857566 ~ 36861009 (+)
G1447998 NA other downstream 1122455 39799936 ~ 39800236 (+)
LOC110493893 cdh22 other downstream 2272061 40767465 ~ 41084819 (+)
LOC110493897 LOC106565282 other downstream 2964642 41641874 ~ 41706180 (+)
G1450387 NA other downstream 3115402 41792883 ~ 41890515 (+)

Expression


Co-expression Network