pmepa1 (pmepa1)


Basic Information

Item Value
gene id pmepa1
gene name pmepa1
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 39342991 ~ 39426900 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021568436.2
CTTGAATGAGGTGAGCTCAGAAGCCCGTCAGACAGACGGATACAAAGTAGCACAAGCTGTTCACAAACATCGGAGATACTGGAGTACCGACGGCAGGCTGCGGCCCGGGGAGGGGGGGAGGACGAAGGCAACTGTGACCCCAGACCCCTGACTTCCACCCGCAAAGAATTTACCAAGAAAGAAAATATCGTTTTTATGTGATTTCTGCACCGTCGCGCGCTAGAGAAGTGAACTGGAGAGAGATCTTCGAAACGTTTTTCTCCTACATTTCCAGATTTAAATGTTCAACTTCATGGGTCTAATAAACGGTACAGCGGCCATCCAGACCAATGTATCCTGTACATGTAACTGCAAACGCTCGACTTCATTCCAAAGCATGGAGATCAcCCAGTTGGAGTTTGTGCAGATCCTGGTGAtcgtggtggtgatgatggtgatggtggtggtgatcaCATGCCTGCTCAACCACTACCGGCTGTCAGCACGCTCCTTCATCTCCAGGCACAGCCAGGCTCGCAGGCGCCAACTACCGCTGGCCTCAGATGGGAGTCTGTGGTCCTCAGATGGCCCAGGGTCCACCAGTGGAATGAGCGAGCAGCAGGTGTACACCCCCCGGCCCCCGGACCGCGGCCCTTCCTACCTGCAGAGGGAGCGTCTGGCCCGCTTCCAGCCCACCTACCCCTACCTGCCCCATGCCATCATTGACCTGCCGCCCACCATATCGCTGTCGGACGGCGAGGAGCCCCCGCCCTACCAGGGCCCCTGCACCCTGCAGCTTCGCGACCCCGAGCAGCAGCTGGAGCTTAACAGGGAGTCGGTGCGCGCGCCCCCCAACCGCACTGTCTACGACAGCCACCTCCTCGATACCTCCCTGTGCCCGCCGCCCAGCCTCAATGCAGGAGTCAGTGCTACCACTGTAGCCACATCCGCACAGGCCTACTCCAGCCGAGTGGAAGGGGCGCCGCCGACTTATAGTGAGGTTATAGGGCACTACTACCACCCCTCTTCCCTGCCCAGGCACCACCACCAGACTTCCAGTGGCAGTGGGGGCATGGGGGGCGGAGGCGGGTTAGGAAGCCCGGCTCCCTCGCTGCTCCATGGGATACTCCAGCAGGCCCACCTGGGCAGCTTGGAGAGCAGGAACGCACGCAACAAAAAGGAGAAGCAGAAGCCTCGGCAAGTGTGACGGCAGTGTTGGTGTCGGCTGTTTTATTTCTTTCTCTGCACTTCAGCTGAACTGTTGGTGTCAGGCAGGGTTGGGGAGGGGAGGTCGACATGGGGTGGCAGGGGGAGGCAGACACAAAAAAAAGAAATGCCTCCCCTCTGAACTTTACCCCCCCGGTCACCGTCATAACTGACAACCGTCGCCGCTGACTTACTTTGTATAAATATTTACTTGTTCTTTGTTGTCTCCGTGCTTACAGCTTTTTTTCTATACTGACAAATGCGAAAACAAAAAAAGagttacattttttaattttatttttaggtttattttgtttttgtatcCCTTTTGCATCATTTCTAGTCACTTATCTCCTTGTAGTTTATCCTTAGTTGCTCCCAGAGTCTTTTAGAATGACCAGGTCTTCCTTTTTTAGATGTAGATGGCTCTTTTAGTGATCCGCCACCTAACCCCGTCTAGCTTTGTGTGCTGTCCGTGTACAGGCTTGTACAGTGCATTGATAGCAATCTTGTATCAGGTTGCCAGATTCAGGCTCTCACGGGTTGCCAGATCGAAGCTCATATGTTAGCCCTAGTTAGCCTCAGCTCATGACCCAGTTGGCCACAGTGTAGACACCCCCGTCGCTCATCAATCCACATCAAAGGGTGAGTAAGCTTAGCGGTGTGGTGGTCAGCGTTGGCATCCATGGAAACACATGATTGACAGCTGACTGGGTCTGTGTATCAACATGTGCACTGGAATAGAGAGTCCTTTGAGGTCAATTGAGTACAGTACTTTGCCCACTGTAGTGCTTTATGGCTATCTTGCTGTACTATCTGGACCCATCTGAGTTTAGTACTGTACTTTGGGTCTTGTCCAGTCGATTTTAGTACTGTCTTTGGGTCTTTGGACAGACAAGTTCAGGAGTTCCCGTGTGCAAATGCTCTTCATTTTTTTCTGGATCTTTTTTAAAGAGATGTTTGCACAAGATTCAAGACTGTTTATCTGGAGAAAAAGAAAAGAAGTCTGCAATATGTATCAtaagagaggagagtgtgagcaGGGGTATTTTTGTAAACATGGATTCtaaagagaaaaatacatttttttgttttattttttgtctGCTCTAGAAATAAAAGTGAAAACGGTCATCTGTTGGGGTGCCAACTCAAA
>XM_021568437.2
TGCAGACCTTTTGCGGGCCGCGGTGTGTCGTTCTGCTCAGTGAGCACACAGGTTGAGGCTCTCGCCAAAGTTGAGGTATTAGGGGTAACACGATGCAGCCGGTCTCAGGGggtccccaccaccaccataactGCGTACAGACTCAATGTAGCGcCCAGTTGGAGTTTGTGCAGATCCTGGTGAtcgtggtggtgatgatggtgatggtggtggtgatcaCATGCCTGCTCAACCACTACCGGCTGTCAGCACGCTCCTTCATCTCCAGGCACAGCCAGGCTCGCAGGCGCCAACTACCGCTGGCCTCAGATGGGAGTCTGTGGTCCTCAGATGGCCCAGGGTCCACCAGTGGAATGAGCGAGCAGCAGGTGTACACCCCCCGGCCCCCGGACCGCGGCCCTTCCTACCTGCAGAGGGAGCGTCTGGCCCGCTTCCAGCCCACCTACCCCTACCTGCCCCATGCCATCATTGACCTGCCGCCCACCATATCGCTGTCGGACGGCGAGGAGCCCCCGCCCTACCAGGGCCCCTGCACCCTGCAGCTTCGCGACCCCGAGCAGCAGCTGGAGCTTAACAGGGAGTCGGTGCGCGCGCCCCCCAACCGCACTGTCTACGACAGCCACCTCCTCGATACCTCCCTGTGCCCGCCGCCCAGCCTCAATGCAGGAGTCAGTGCTACCACTGTAGCCACATCCGCACAGGCCTACTCCAGCCGAGTGGAAGGGGCGCCGCCGACTTATAGTGAGGTTATAGGGCACTACTACCACCCCTCTTCCCTGCCCAGGCACCACCACCAGACTTCCAGTGGCAGTGGGGGCATGGGGGGCGGAGGCGGGTTAGGAAGCCCGGCTCCCTCGCTGCTCCATGGGATACTCCAGCAGGCCCACCTGGGCAGCTTGGAGAGCAGGAACGCACGCAACAAAAAGGAGAAGCAGAAGCCTCGGCAAGTGTGACGGCAGTGTTGGTGTCGGCTGTTTTATTTCTTTCTCTGCACTTCAGCTGAACTGTTGGTGTCAGGCAGGGTTGGGGAGGGGAGGTCGACATGGGGTGGCAGGGGGAGGCAGACACAAAAAAAAGAAATGCCTCCCCTCTGAACTTTACCCCCCCGGTCACCGTCATAACTGACAACCGTCGCCGCTGACTTACTTTGTATAAATATTTACTTGTTCTTTGTTGTCTCCGTGCTTACAGCTTTTTTTCTATACTGACAAATGCGAAAACAAAAAAAGagttacattttttaattttatttttaggtttattttgtttttgtatcCCTTTTGCATCATTTCTAGTCACTTATCTCCTTGTAGTTTATCCTTAGTTGCTCCCAGAGTCTTTTAGAATGACCAGGTCTTCCTTTTTTAGATGTAGATGGCTCTTTTAGTGATCCGCCACCTAACCCCGTCTAGCTTTGTGTGCTGTCCGTGTACAGGCTTGTACAGTGCATTGATAGCAATCTTGTATCAGGTTGCCAGATTCAGGCTCTCACGGGTTGCCAGATCGAAGCTCATATGTTAGCCCTAGTTAGCCTCAGCTCATGACCCAGTTGGCCACAGTGTAGACACCCCCGTCGCTCATCAATCCACATCAAAGGGTGAGTAAGCTTAGCGGTGTGGTGGTCAGCGTTGGCATCCATGGAAACACATGATTGACAGCTGACTGGGTCTGTGTATCAACATGTGCACTGGAATAGAGAGTCCTTTGAGGTCAATTGAGTACAGTACTTTGCCCACTGTAGTGCTTTATGGCTATCTTGCTGTACTATCTGGACCCATCTGAGTTTAGTACTGTACTTTGGGTCTTGTCCAGTCGATTTTAGTACTGTCTTTGGGTCTTTGGACAGACAAGTTCAGGAGTTCCCGTGTGCAAATGCTCTTCATTTTTTTCTGGATCTTTTTTAAAGAGATGTTTGCACAAGATTCAAGACTGTTTATCTGGAGAAAAAGAAAAGAAGTCTGCAATATGTATCAtaagagaggagagtgtgagcaGGGGTATTTTTGTAAACATGGATTCtaaagagaaaaatacatttttttgttttattttttgtctGCTCTAGAAATAAAAGTGAAAACGGTCATCTGTTGGGGTGCCAACTCAAA
>XM_036949863.1
TGTAGCGGTGAGTTGTGCATTAATCGTTACTATCTTGGATTTTAATCATTGGGTAAAATCTGTAGGAGTTTGTTTTTTCTCTTCGTGCATTAGTTTTTTTTTCCCCAAGTCAAAAGTCCAATGCGcCCAGTTGGAGTTTGTGCAGATCCTGGTGAtcgtggtggtgatgatggtgatggtggtggtgatcaCATGCCTGCTCAACCACTACCGGCTGTCAGCACGCTCCTTCATCTCCAGGCACAGCCAGGCTCGCAGGCGCCAACTACCGCTGGCCTCAGATGGGAGTCTGTGGTCCTCAGATGGCCCAGGGTCCACCAGTGGAATGAGCGAGCAGCAGGTGTACACCCCCCGGCCCCCGGACCGCGGCCCTTCCTACCTGCAGAGGGAGCGTCTGGCCCGCTTCCAGCCCACCTACCCCTACCTGCCCCATGCCATCATTGACCTGCCGCCCACCATATCGCTGTCGGACGGCGAGGAGCCCCCGCCCTACCAGGGCCCCTGCACCCTGCAGCTTCGCGACCCCGAGCAGCAGCTGGAGCTTAACAGGGAGTCGGTGCGCGCGCCCCCCAACCGCACTGTCTACGACAGCCACCTCCTCGATACCTCCCTGTGCCCGCCGCCCAGCCTCAATGCAGGAGTCAGTGCTACCACTGTAGCCACATCCGCACAGGCCTACTCCAGCCGAGTGGAAGGGGCGCCGCCGACTTATAGTGAGGTTATAGGGCACTACTACCACCCCTCTTCCCTGCCCAGGCACCACCACCAGACTTCCAGTGGCAGTGGGGGCATGGGGGGCGGAGGCGGGTTAGGAAGCCCGGCTCCCTCGCTGCTCCATGGGATACTCCAGCAGGCCCACCTGGGCAGCTTGGAGAGCAGGAACGCACGCAACAAAAAGGAGAAGCAGAAGCCTCGGCAAGTGTGACGGCAGTGTTGGTGTCGGCTGTTTTATTTCTTTCTCTGCACTTCAGCTGAACTGTTGGTGTCAGGCAGGGTTGGGGAGGGGAGGTCGACATGGGGTGGCAGGGGGAGGCAGACACAAAAAAAAGAAATGCCTCCCCTCTGAACTTTACCCCCCCGGTCACCGTCATAACTGACAACCGTCGCCGCTGACTTACTTTGTATAAATATTTACTTGTTCTTTGTTGTCTCCGTGCTTACAGCTTTTTTTCTATACTGACAAATGCGAAAACAAAAAAAGagttacattttttaattttatttttaggtttattttgtttttgtatcCCTTTTGCATCATTTCTAGTCACTTATCTCCTTGTAGTTTATCCTTAGTTGCTCCCAGAGTCTTTTAGAATGACCAGGTCTTCCTTTTTTAGATGTAGATGGCTCTTTTAGTGATCCGCCACCTAACCCCGTCTAGCTTTGTGTGCTGTCCGTGTACAGGCTTGTACAGTGCATTGATAGCAATCTTGTATCAGGTTGCCAGATTCAGGCTCTCACGGGTTGCCAGATCGAAGCTCATATGTTAGCCCTAGTTAGCCTCAGCTCATGACCCAGTTGGCCACAGTGTAGACACCCCCGTCGCTCATCAATCCACATCAAAGGGTGAGTAAGCTTAGCGGTGTGGTGGTCAGCGTTGGCATCCATGGAAACACATGATTGACAGCTGACTGGGTCTGTGTATCAACATGTGCACTGGAATAGAGAGTCCTTTGAGGTCAATTGAGTACAGTACTTTGCCCACTGTAGTGCTTTATGGCTATCTTGCTGTACTATCTGGACCCATCTGAGTTTAGTACTGTACTTTGGGTCTTGTCCAGTCGATTTTAGTACTGTCTTTGGGTCTTTGGACAGACAAGTTCAGGAGTTCCCGTGTGCAAATGCTCTTCATTTTTTTCTGGATCTTTTTTAAAGAGATGTTTGCACAAGATTCAAGACTGTTTATCTGGAGAAAAAGAAAAGAAGTCTGCAATATGTATCAtaagagaggagagtgtgagcaGGGGTATTTTTGTAAACATGGATTCtaaagagaaaaatacatttttttgttttattttttgtctGCTCTAGAAATAAAAGTGAAAACGGTCATCTGTTGGGGTGCCAACTCAAA
>TU1656618
CGGATACAAAGTAGCACAAGCTGTTCACAAACATCGGAGATACTGGAGTACCGACGGCAGGCTGCGGCCCGGGGAGGGGGGGAGGACGAAGGCAACTGTGACCCCAGACCCCTGACTTCCACCCGCAAAGAATTTACCAAGAAAGAAAATATCGTTTTTATGTGATTTCTGCACCGTCGCGCGCTAGAGAAGTGAACTGGAGAGAGATCTTCGAAACGTTTTTCTCCTACATTTCCAGATTTAAATGTTCAACTTCATGGGTCTAATAAACGGTACAGCGGCCATCCAGACCAATGTATCCTGTACATGTAACTGCAAACGCTCGACTTCATTCCAAAGCATGGAGATCAcCCAGTTGGAGTTTGTGCAGATCCTGGTGAtcgtggtggtgatgatggtgatggtggtggtgatcaCATGCCTGCTCAACCACTACCGGCTGTCAGCACGCTCCTTCATCTCCAGGCACAGCCAGGCTCGCAGGCGCCAACTACCGCTGGCCTCAGGTTGGTACCTTAAATCACCCCCTGTCCCCATCTGAAATGAGCTACAGTTCCAGAGAGATGCCCGTGTCCAATGATGGAGTCCCACATAGACCTTCCTCGTGCTGCCATTGGCTGGGTGTCGGTCCCCTTGGAAATGTTCAGTGTTTATGTGCGCCTGCCTGTGATGACAGATTAGGCTCCGTCTGTGCTGTCAGTCTGCCTAGACTTGCCCTAGACTGACTCACAAAATGACAGACGTATGGATGATAATGTTGACAGAGTTGTCGCGAAGAGTGTTGCAATATACCTACTATTTGCCTTTTGATAATGTAGTAATTGTTTAACTTAGAGAAATGTAATGTaatttttttcttctgttttttcttaaacaaatatatttttgctCCAATTCATTGTACACGCATATAAGGGTTTTGCTGAATGAATAACAGAACATTTATTCCATGGTTTGACCACCAGGTGTCTTCACTAACTATATTGTCTACCATTGTGAGTCAGGCTTTGGAGACAATACCCCAAACCAGGTTGGGCATCACTTTGTTTCAATGCAGCCAGTACCACAGGTTTCTGCACTTTATTTAAACTGGTAGAGTTGATGGGAAGTACTTTTAGGTGACCAAGTGCCAGATCGATGCCTTTGCTCCTATTCTCTATTCGAGAACCCTTTAGTCGTCTTCAACATGCGCTATAGTACTTAGTGTGGAATATATGCCTCTTGCTTTTGGCGGCACCATTTTGAAGACAAGTACAAGGAACAACCAGATGGGGACAGGCTTAAAGGCATCACCCTGGGCCAGAACCTTCTTTACCTTCGTCCACCCTCCCAACTACAGCCTCCTTGACCAGTGTGAACCTTACGgagtccatattaggacagctgAGATTAAAGCcatcctaatatggacaccatagaGTGGACCTGGATGGGTTAAATTCTGCCATATTACCTATTGGTCTATATACCCAAATCACTATAGATTCCCTTCACCACCACATGCTCAGTTTTTAGATGTGTGCCTTTGAGGATTTTGTGGTTGAGACTTTTTTTGTAATGTGTGTTAGCGCAATTTTCTTCCTCTGGATTCTGTTGCCTTTTTCACATGAAACAAATCGCCCTTGTTATTTACAATACCAAAAAATACAATAGAGAATTGACTCCCATGTTCTATCATACGATGATCATTTCCAACTTCGCTGCATGCATACCGATAAGAGTAAATATTAACCTTGAAGCACTAAAGTAAACCAAATGGGTGAAGCATGGGATGGAGAGGTTTCTAAGGGCCCAGCTCTATGAATATAGAACATAGCAAACAGAACCTGTCCCATTATGCAGTACATGTCCCACTACTGCATTATAAAACAGGGGTTTGTACTTTGCTGCATTGTAATCATCATCTGCTTTAGATTCCGATATTTCCTTCAATAAGTTACTGTTGAGGGTTTCAgtgtgggggaaaaaaagcaTTTCCAAAGAAGGAATCATCCTAACCAGACTCTTTTAGACTGTCAAGAGTCAAAATGACTTGAACTTTGTTATTTTCCTTTGtttgactgttttttttttactgttctgTTGCTTTGCTTGTTTTGCCCTTCAAATTAGCATTGCTTTGAGTCTTTTCTtttttgaaataaataaaagatcgatgataaaaaaaaaatatatatggttGCAGTATAAGCATATTTATCAAACTCTTAAGCAATTTATTAACTGTACAGAAAAACCGACTATCCTGGTGCTTATTTTGTTATGACGCTTTGTGTACTGATGAAGAGGTAATGTTGTACTGTCTATATAAAATCAGTTCTATTCTATAACATGTTCTATGCCGAGATGTATTGCAGTAAATATATAGATGCCTACTGTTGTCGACAATAATTGCTTACGTGTATCAACATTGTTTATTTAAATTTATATTGGATCCTTAAAGTGTTACTGGGTTTGTATCTCTATTTGATAAGAACAGGAGACAATGTCTATAACAGAACATGCTATGAATCTGATACATTTCAATTAGCCCCC

Function

symbol description
pmepa1 Predicted to enable R-SMAD binding activity. Predicted to be involved in negative regulation of SMAD protein complex assembly; negative regulation of pathway-restricted SMAD protein phosphorylation; and negative regulation of transforming growth factor beta receptor signaling pathway. Predicted to act upstream of or within negative regulation of signal transduction. Predicted to be located in endosome and membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi membrane and early endosome membrane. Is expressed in brain; liver; ventricular zone; and yolk syncytial layer. Orthologous to human PMEPA1 (prostate transmembrane protein, androgen induced 1).

NR:

description
protein TMEPAI-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021568436.2 False 2341 mRNA 0.51 4 39342991 39419811
XM_021568437.2 False 2108 mRNA 0.52 4 39396040 39419811
XM_036949863.1 False 2080 mRNA 0.51 4 39396186 39419811
TU1656618 True 2535 TUCP 0.41 3 39343027 39426900

Neighbor

gene id symbol gene type direction distance location
LOC110493876 NA coding upstream 117267 39220263 ~ 39225724 (+)
asip1 asip coding upstream 159031 39178717 ~ 39183960 (+)
raly LOC106565059 coding upstream 261530 38909389 ~ 39081461 (+)
romo1 romo1 coding upstream 665510 38675958 ~ 38677481 (+)
mtss1 LOC106565049 coding upstream 796208 38428173 ~ 38546783 (+)
ccndbp1 ccndbp1 coding downstream 80885 39500696 ~ 39521498 (+)
LOC110493884 LOC106565072 coding downstream 232053 39651864 ~ 39696026 (+)
LOC110493887 LOC106565076 coding downstream 486462 39906273 ~ 39917797 (+)
LOC110493888 LOC106565077 coding downstream 528815 39948626 ~ 40269835 (+)
LOC110493889 LOC106565080 coding downstream 893065 40312876 ~ 40367740 (+)
G1447017 NA non-coding upstream 220023 39122767 ~ 39122968 (+)
G1446992 NA non-coding upstream 251843 39089905 ~ 39091148 (+)
G1446994 NA non-coding upstream 253513 39089269 ~ 39089478 (+)
G1446991 NA non-coding upstream 256265 39086508 ~ 39086726 (+)
G1446874 NA non-coding upstream 259547 39081804 ~ 39083444 (+)
G1447480 NA non-coding downstream 10165 39429976 ~ 39434546 (+)
G1447563 NA non-coding downstream 187158 39606969 ~ 39607548 (+)
G1447558 NA non-coding downstream 277407 39697218 ~ 39717880 (+)
G1447648 NA non-coding downstream 300986 39720797 ~ 39767245 (+)
G1448007 NA non-coding downstream 386133 39805944 ~ 39806156 (+)
G1446149 NA other upstream 1032127 38309129 ~ 38310864 (+)
rbl1 rbl1 other upstream 1754264 37538220 ~ 37588797 (+)
chd6 NA other upstream 1902579 37406926 ~ 37514061 (+)
G1444933 NA other upstream 1940499 37402197 ~ 37402492 (+)
G1444198 LOC106565031 other upstream 2481982 36857566 ~ 36861009 (+)
G1447998 NA other downstream 380125 39799936 ~ 39800236 (+)
LOC110493893 cdh22 other downstream 1529731 40767465 ~ 41084819 (+)
LOC110493897 LOC106565282 other downstream 2222312 41641874 ~ 41706180 (+)
G1450387 NA other downstream 2373072 41792883 ~ 41890515 (+)
G1451948 LOC570405 other downstream 3908775 43328586 ~ 43459832 (+)

Expression


Co-expression Network