LOC110493887 (LOC106565076)


Basic Information

Item Value
gene id LOC110493887
gene name LOC106565076
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 39906273 ~ 39917797 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021568449.2
GATCCATAAATGAATGGTGTGGGCTCGCCGGCCACACCATGCAAGCCCAATCCCTGATTGGTTATGAATAAACATTGTCAGAGTATATATATTGTGGTAGGCGTCACAGTTCCAAGAAACGAGAACACTGAAACTTCCAAGTTTCCAACAAAGCAAATACATTCATTCGTGTCCCAGTATTTATTCTTTATTAGCCTATCACAGCACGAGAATGAGGGCACAAATCCAAAAGGTACCACAGATAGTAGAATTGTTAAAAAAGAAAACGGTTGGTTTGCAGCACTTCAAGCCAACATCTTCAGTGTGCGTCCTGGACCCGAAGGATGCTACATTGGTTGCGCCTTGTCGACACAGTCTTCCCTCGCAGACTCAGAGCCTGGACTCGATACCTGGACCCACCAACTGGCCCTTATTTGGCAGTTTGATAGAACTACTACTCAAAGGAGGGCTGCAAAGACAACACAATGCATTGATTGATTACCATAAGAAATTCGGAAAGATTTTCCGGATGAAACTCGGCTCCTTTGAATCGGTCCATATTGGCGCACCTTGCTTAGTGGAGGCACTCTACAGAAAGGAGAGCGCTTACCCACAGCGTCTGGAGATCAAACCCTGGAAAGCATACCGAGACTTAAGAGACGAGGCATATGGACTTCTCATTCTGGAAGGGGAAGACTGGCAGAGGGTGAGAAGCACGTTTCAGCAGAAATTGATGAAACCCACAGAAGTCGCGAAACTTGATGGAAAAATAAACCAGGTGTTGGCCGATTTCGTTAGTAGAATTGGGCAAGTGACTGACAATGGACAATTTGTGGACTTGTACTTCGAATTGAATAAATGGTCAATGGAGACCATTTGCTTAGTGCTCTACGACAAACGCTTCGGACTTCTGCATGACAATGTCAACGAGGAGGCTATGACCTTTATCACATCCATAAAGACGATGATGAGCACATTTGGCGCCATGATGGTCACGCCAGTGGAGCTCCACAAAAAACTGAACACCAAAACATGGCAGGACCACACCACGGCATGGGACCGTATATTCAGTACAGCCAAAGTCTACATAGACAAGAAGATAAAGCGCCATGCAGGGGCAACAGGGCCCAGTGACGACTTCCTGTGTGACATCTACCGCCACAGTCACCTGTCCAAGAAAGAGCTGTACGCCGCCATCACAGAGCTCCAGATCGGAGGAGTGGAGACGACTGCCAACAGCATGCTGTGGgctattttcaacctctcccgtAACCCCTGCGTTCAGAAGAAGCTGCTCCAAGAAATCAGAGAGGTTCTGCCTGCTAGTCAGACTCCCAGTGCCAAGCACCTCCAGAGAATGCCTTACATCAAGGCCTGCCTCAAGGAATCCATGAGGTTATCGCCGTCAGTTCCCTTCACGAGTCGGACCTTAGACAAAGACACTGTGTTGGGGGATTACTCCATTCCCAAGGGGACAGTGTTGATGATCAACAGCCATGCTCAGGGTGCCAATGAGGAATACTTCCACGACAGCAGCCGGTTTAAACCAGAGCGTTGGCTAAAAGAGAGCAGTACCATCAACCCCTTTGCCCATGTGCCGTTTGGTGTTGGGAAGAGGATGTGTATTGGGCGGCGTCTGGCAGAGCTACAGCTGCAGTTGGCACTCTGCTGGGTCATCAGAGATTATGAAATTGTGGCGACAGATAGTGAACCAGTTGAAACGATCCATTCGGGGACGCTTGTTCCCAACCGTGAACTCCCTGTGGCTTTCATTAGACGATGAGGCTTCAAACACAGATCATTTGGACCTCACTACAGAAAGATAATAGATCTAGACCTGAATGTCCAGAGAGACTCCCTTTATTGCTGCTCTgtaaataacaaagagaaaataTCAGATCTAACTATATTTTTATGTAATCCTGTCACATATACCTCAAACTAATATAAATGCATTTAAACTATCAACTATGAGAGTTAGCCTACTTGTTGACCAATAACTTTTAGCTTGTGTTGTAAGACAACTGCACTTTACTGCCCACTAATCTTAAACAACTGTTCTTATGtcaaaaatgttaaataaattaTGACTTTTGTATATGTTGTCTTTGTATGTTAAAGTATATACATTACATGAATAAAGGCTAC

Function

NR:

description
1,25-dihydroxyvitamin D(3) 24-hydroxylase, mitochondrial-like

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen molecular_function
GO:0004497 monooxygenase activity molecular_function
GO:0005506 iron ion binding molecular_function
GO:0020037 heme binding molecular_function

KEGG:

id description
K07436 CYP24A1; vitamin D3 24-hydroxylase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021568449.2 True 2127 mRNA 0.46 12 39906273 39917797

Neighbor

gene id symbol gene type direction distance location
LOC110493884 LOC106565072 coding upstream 210247 39651864 ~ 39696026 (+)
ccndbp1 ccndbp1 coding upstream 384775 39500696 ~ 39521498 (+)
pmepa1 pmepa1 coding upstream 486462 39342991 ~ 39426900 (+)
LOC110493876 NA coding upstream 680549 39220263 ~ 39225724 (+)
asip1 asip coding upstream 722313 39178717 ~ 39183960 (+)
LOC110493888 LOC106565077 coding downstream 30829 39948626 ~ 40269835 (+)
LOC110493889 LOC106565080 coding downstream 395079 40312876 ~ 40367740 (+)
LOC118940425 dnttip1 coding downstream 449960 40367757 ~ 40378949 (+)
LOC118940426 LOC106565291 coding downstream 465388 40383185 ~ 40385420 (+)
LOC110493184 LOC106565288 coding downstream 530730 40448527 ~ 40474689 (+)
G1448130 NA non-coding upstream 1812 39904260 ~ 39904461 (+)
G1448007 NA non-coding upstream 100117 39805944 ~ 39806156 (+)
G1447648 NA non-coding upstream 139028 39720797 ~ 39767245 (+)
G1447558 NA non-coding upstream 188393 39697218 ~ 39717880 (+)
G1447563 NA non-coding upstream 298725 39606969 ~ 39607548 (+)
G1448150 NA non-coding downstream 23128 39940925 ~ 39941301 (+)
G1448174 NA non-coding downstream 69737 39987534 ~ 39988009 (+)
G1448318 NA non-coding downstream 356063 40273860 ~ 40274685 (+)
G1448324 NA non-coding downstream 358511 40276308 ~ 40276575 (+)
G1448325 NA non-coding downstream 358990 40276787 ~ 40277138 (+)
G1447998 NA other upstream 106037 39799936 ~ 39800236 (+)
G1446149 NA other upstream 1595409 38309129 ~ 38310864 (+)
rbl1 rbl1 other upstream 2317546 37538220 ~ 37588797 (+)
chd6 NA other upstream 2465861 37406926 ~ 37514061 (+)
LOC110493893 cdh22 other downstream 1031745 40767465 ~ 41084819 (+)
LOC110493897 LOC106565282 other downstream 1724326 41641874 ~ 41706180 (+)
G1450387 NA other downstream 1875086 41792883 ~ 41890515 (+)
G1451948 LOC570405 other downstream 3410789 43328586 ~ 43459832 (+)
G1451956 LOC106958509 other downstream 3411302 43329099 ~ 43409816 (+)

Expression


Co-expression Network