LOC118940425 (dnttip1)



Basic Information


Item Value
gene id LOC118940425
gene name dnttip1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 40367757 ~ 40378949 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>XM_036949878.1
AATGAGTCTGGAGAACGATGGCTTtttctccatccatctttccTCGATTCCTCACCTCAAAGTGCATTAGAGGAGAAGGACTGAGGGGAGGGCCTTGAAACTTCTCCTCCAATATGGTTGAAAGGAGGCGAGGAGACAATATGCGAGATATTGCAGAAGGACTTATCTAGATGGAGCCCAAATCTCATATAAATGAAGTTGTTTTAATGTGAACATGATACACTGATTCACGCTTCCAAACAGTTATGTTGTTATTTGAAAGTGAGGATGCTGGCTGGAAGTATGAATGAGTGATTTACTCATTGCATTAGTCTTATTGCTCCAAAATCATAAATGGAGTTCTTGGAAGGAAAGTAGAGAGAACGCTGTCACTTTCATCTCAGCAACAATGTCTATTTTCTTACAGCGGGTGAAACTGGAGGATGAGTCCAGCCAGAGGGCCAGCCCTGTTCCCAAAAAGcggAAAGGACGCCCAACCGCTCCTGTCGGTTCTTACGACAAACCTGTTACATATAGCAATGTGCCCAAGCCCAAGACATTGGAGTCCGTAAAGCGTGAGGGACCAAAGTGGGACCCTTCCAGACTGAATGAAGGAAGCACATTTGTTCTTGGGTCCAGGGCAAACAAGGCTTTAGGAATGGGTGGCACCAGAGGAAGGATTTACATCAAACATGCTGAACTCTTCAagTATGCGGCTGATGCTCAGGACAAACACTGGTTGGCAGAGAGACAGCATATGAGAGCCACAGGTGGAAAGATGGCCTATCTCCTTATTGAAGAGGACGTCCAGGACCTTTCTCTGAGTGACGATTACAAAGATTGCCCCGACCTAAAAATGACCCCAATTGAATTAAAGCCTTTTACTGTTCCTGGGTGGATGATTGAGAAGATGCAGAAAGCCATGGAGGTCCAGAGTTCGGGGAAGGAATAAAATTGTACTTTGTGTGCAGGGAAGGAATAAAATCCTATTTTGTGTCgctatggcaccatattccccatatagtgcacaacatttgaccagagcaatatactgtaggtcatggtcaaaagtagtgcacaacatagggaatagggtgccatttgggatccagGTCTAGAAAACCACAGAACAGAAAGAATTCCTGTCATATCAAATCACGAGAGACTGGACAAGAGTGCCAATGTATTTTCTGCCTGTGTAGCTTTGGATGCAGTGTCATTGTATACAACTACTGAACAGTGTTCTTTGATAAAGAAATGTGCCCCTTTTTCTATTTCTATCCTTACTGTACTGTAACGTTAAAAGGGGCTCTATGGCAGGCTATGGCCCCTTGGTAATAGAACGGTTCTTGGGGGTGAGGGTGTATTCCCCCCCATAATGAATATATAAGGAGTTTCCATTGTTCTTGTACAGTGATGTTGTTTTCCCATTTACTAGACTGTATTCTCAATTTTATACAATGTCTTTTGCTTTTGTTTGTCATTTGctgtgattttattttttactacaaACTTTCAAGAGCAGAATGTATTTAATTTTGTCTTTTCGGATTAGTTGACTATGATTTAAAAAGGATATGGGTGCTTGATCAATTTGTTAGTCATTTCTatgcaaaataaatgttttaatgaCTACA

Function


symbol description
dnttip1 Enables DNA binding activity; nucleosome binding activity; and protein homodimerization activity. Located in chromosome; nucleolus; and nucleoplasm. Part of histone deacetylase complex.

NR:

description
deoxynucleotidyltransferase terminal-interacting protein 1-like isoform X3

GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
XM_036949878.1 True 1616 mRNA 0.42 8 40367757 40378949

Neighbor


gene id symbol gene type direction distance location
LOC110493889 LOC106565080 coding upstream 17 40312876 ~ 40367740 (+)
LOC110493888 LOC106565077 coding upstream 97922 39948626 ~ 40269835 (+)
LOC110493887 LOC106565076 coding upstream 449960 39906273 ~ 39917797 (+)
LOC110493884 LOC106565072 coding upstream 671731 39651864 ~ 39696026 (+)
ccndbp1 ccndbp1 coding upstream 846259 39500696 ~ 39521498 (+)
LOC118940426 LOC106565291 coding downstream 4236 40383185 ~ 40385420 (+)
LOC110493184 LOC106565288 coding downstream 69578 40448527 ~ 40474689 (+)
LOC110493893 cdh22 coding downstream 388516 40767465 ~ 41084819 (+)
LOC110493894 LOC106565283 coding downstream 1151224 41530173 ~ 41547714 (+)
LOC110493897 LOC106565282 coding downstream 1262925 41641874 ~ 41706180 (+)
G1448357 NA non-coding upstream 50404 40316826 ~ 40317353 (+)
G1448349 NA non-coding upstream 64453 40302956 ~ 40303304 (+)
G1448330 NA non-coding upstream 87596 40279944 ~ 40280161 (+)
G1448329 NA non-coding upstream 87909 40279508 ~ 40279848 (+)
G1448328 NA non-coding upstream 88305 40279242 ~ 40279452 (+)
G1448405 NA non-coding downstream 50620 40429569 ~ 40429816 (+)
G1448406 NA non-coding downstream 51818 40430767 ~ 40430995 (+)
G1448441 NA non-coding downstream 136745 40515694 ~ 40522238 (+)
G1448906 NA non-coding downstream 176276 40555225 ~ 40555937 (+)
G1447998 NA other upstream 567521 39799936 ~ 39800236 (+)
pmepa1 pmepa1 other upstream 940857 39342991 ~ 39426900 (+)
G1446149 NA other upstream 2056893 38309129 ~ 38310864 (+)
rbl1 rbl1 other upstream 2779030 37538220 ~ 37588797 (+)
chd6 NA other upstream 2927345 37406926 ~ 37514061 (+)
G1450387 NA other downstream 1413934 41792883 ~ 41890515 (+)
G1451948 LOC570405 other downstream 2949637 43328586 ~ 43459832 (+)
G1451956 LOC106958509 other downstream 2950150 43329099 ~ 43409816 (+)

Expression



Co-expression Network