LOC118940426 (LOC106565291)


Basic Information

Item Value
gene id LOC118940426
gene name LOC106565291
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 40383185 ~ 40385420 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036949880.1
GTTGCTACGGATTTGCTTTGTTTTAAACACGAAGTTGCGATTGGTCATGTTCGCAAACAGAGCGGTGACACggttttgaaaaaaaaaacatttaaacggGGGCGGGATCTCTACACAGTTTGAAAATCTCAGTAGCAGAAAAACAGAGTTGGTGAAGACAGAACAGACACATCAGTAGAAGTATGGCCTCTCAAAATATGGACCCTGCAGCCGCCTCGTCCACAGCAGCTCTGAAAGGGACTGAGACCGGTGGGAGTGCAGCAAAGGGCTCAGTCACGAAGAGACTTCAACAAGAACTGATGACACTAATGATGTCTGGAGATAAAGGGATCTCTGCTTTCCCGGAGTCTGACAACCTTTTTAAGTGGATAGGAACGATAGACGGAGCTCAGGGAACAGTTTACGAAGGCCTGAGGTACAAGCTGTCGTTGGAGTTCCCCAGTGGCTACCCGTACAAAGCCCCCCGAGTGAAGTTCATCACGCCATGTTTTCACCCCAACGTCGATGATCAGGGCTTCATCTGTCTGGATATCTTGAAAGACAAGTGGTCAGCCCTGTACGACGTACGGTCCATTCTTCTGTCCATCCAGAGTTTATTAGGAGAGCCCAACATTGAGAGTCCATtgaacactgctgctgctgagcTTTGGGATAACCAGGAAGCCTTCAAAGCCCATTTGAACACAACCTACAAGAACTGACTCGAGCTCCTACAATCCTGCCATGTTTTATTTCTATGTGTTTTTCTATGCTTCTAATTATGTACATTTCAATACTGGGTATGTCTCTACAATATTTTTGTTTGTATGACCTCTATGTGAATAAAGATGTCTAGGTATGTTAA
>XM_036949881.1
ACGAAGTTGCGATTGGTCATGTTCGCAAACAGAGCGGTGACACggttttgaaaaaaaaaacatttaaacggGGGCGGGATCTCTACACAGTTTGAAAATCTCAGTAGCAGAAAAACAGAGTTGGTGAAGACAGAACAGACACATCAGAAGTATGGCCTCTCAAAATATGGACCCTGCAGCCGCCTCGTCCACAGCAGCTCTGAAAGGGACTGAGACCGGTGGGAGTGCAGCAAAGGGCTCAGTCACGAAGAGACTTCAACAAGAACTGATGACACTAATGATGTCTGGAGATAAAGGGATCTCTGCTTTCCCGGAGTCTGACAACCTTTTTAAGTGGATAGGAACGATAGACGGAGCTCAGGGAACAGTTTACGAAGGCCTGAGGTACAAGCTGTCGTTGGAGTTCCCCAGTGGCTACCCGTACAAAGCCCCCCGAGTGAAGTTCATCACGCCATGTTTTCACCCCAACGTCGATGATCAGGGCTTCATCTGTCTGGATATCTTGAAAGACAAGTGGTCAGCCCTGTACGACGTACGGTCCATTCTTCTGTCCATCCAGAGTTTATTAGGAGAGCCCAACATTGAGAGTCCATtgaacactgctgctgctgagcTTTGGGATAACCAGGAAGCCTTCAAAGCCCATTTGAACACAACCTACAAGAACTGACTCGAGCTCCTACAATCCTGCCATGTTTTATTTCTATGTGTTTTTCTATGCTTCTAATTATGTACATTTCAATACTGGGTATGTCTCTACAATATTTTTGTTTGTATGACCTCTATGTGAATAAAGATGTCTAGGTATGTTAA
>XM_036949879.1
taacgttagctggctaaagAAGTCATTCAACCTGTTAGCACTGTTATGCTGCAACAAGAAAACACTCACTCCTCTAaccgttagctggctagctaatgtAGCTTGCATTTGCGCTGTAACAATGTTTAACTAGCTAGATAACATTATTAGCAAACATCCTCATGTGTTATTAGTTAACCGTGGTAAATGGTGTTATGCCTAGCCGAGGATATATGTGGGCTACGTTAGCCAATGCAAACATTTCTAACGTTAGCTATGCCCTGCTAGCTGAAATGGCTAACTAGGCACCTTAAAAATCCAGCTAACGTTAGATGGCTAACTAACGTCATGACAACACCCTGTAGAAGTATGGCCTCTCAAAATATGGACCCTGCAGCCGCCTCGTCCACAGCAGCTCTGAAAGGGACTGAGACCGGTGGGAGTGCAGCAAAGGGCTCAGTCACGAAGAGACTTCAACAAGAACTGATGACACTAATGATGTCTGGAGATAAAGGGATCTCTGCTTTCCCGGAGTCTGACAACCTTTTTAAGTGGATAGGAACGATAGACGGAGCTCAGGGAACAGTTTACGAAGGCCTGAGGTACAAGCTGTCGTTGGAGTTCCCCAGTGGCTACCCGTACAAAGCCCCCCGAGTGAAGTTCATCACGCCATGTTTTCACCCCAACGTCGATGATCAGGGCTTCATCTGTCTGGATATCTTGAAAGACAAGTGGTCAGCCCTGTACGACGTACGGTCCATTCTTCTGTCCATCCAGAGTTTATTAGGAGAGCCCAACATTGAGAGTCCATtgaacactgctgctgctgagcTTTGGGATAACCAGGAAGCCTTCAAAGCCCATTTGAACACAACCTACAAGAACTGACTCGAGCTCCTACAATCCTGCCATGTTTTATTTCTATGTGTTTTTCTATGCTTCTAATTATGTACATTTCAATACTGGGTATGTCTCTACAATATTTTTGTTTGTATGACCTCTATGTGAATAAAGATGTCTAGGTATGTTAA

Function

NR:

description
ubiquitin-conjugating enzyme E2 C

GO:

id name namespace
GO:0016567 protein ubiquitination biological_process
GO:0004842 ubiquitin-protein transferase activity molecular_function

KEGG:

id description
K06688 UBE2C, UBC11; ubiquitin-conjugating enzyme E2 C

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036949880.1 False 844 mRNA 0.45 7 40383185 40385420
XM_036949881.1 False 813 mRNA 0.46 7 40383213 40385420
XM_036949879.1 True 1010 mRNA 0.45 7 40383441 40385420

Neighbor

gene id symbol gene type direction distance location
LOC118940425 dnttip1 coding upstream 4236 40367757 ~ 40378949 (+)
LOC110493889 LOC106565080 coding upstream 15445 40312876 ~ 40367740 (+)
LOC110493888 LOC106565077 coding upstream 113350 39948626 ~ 40269835 (+)
LOC110493887 LOC106565076 coding upstream 465388 39906273 ~ 39917797 (+)
LOC110493884 LOC106565072 coding upstream 687159 39651864 ~ 39696026 (+)
LOC110493184 LOC106565288 coding downstream 63107 40448527 ~ 40474689 (+)
LOC110493893 cdh22 coding downstream 382045 40767465 ~ 41084819 (+)
LOC110493894 LOC106565283 coding downstream 1144753 41530173 ~ 41547714 (+)
LOC110493897 LOC106565282 coding downstream 1256454 41641874 ~ 41706180 (+)
LOC110493901 LOC106565279 coding downstream 1436942 41822362 ~ 41887681 (+)
G1448357 NA non-coding upstream 65832 40316826 ~ 40317353 (+)
G1448349 NA non-coding upstream 79881 40302956 ~ 40303304 (+)
G1448330 NA non-coding upstream 103024 40279944 ~ 40280161 (+)
G1448329 NA non-coding upstream 103337 40279508 ~ 40279848 (+)
G1448328 NA non-coding upstream 103733 40279242 ~ 40279452 (+)
G1448405 NA non-coding downstream 44149 40429569 ~ 40429816 (+)
G1448406 NA non-coding downstream 45347 40430767 ~ 40430995 (+)
G1448441 NA non-coding downstream 130274 40515694 ~ 40522238 (+)
G1448906 NA non-coding downstream 169805 40555225 ~ 40555937 (+)
G1447998 NA other upstream 582949 39799936 ~ 39800236 (+)
pmepa1 pmepa1 other upstream 956285 39342991 ~ 39426900 (+)
G1446149 NA other upstream 2072321 38309129 ~ 38310864 (+)
rbl1 rbl1 other upstream 2794458 37538220 ~ 37588797 (+)
chd6 NA other upstream 2942773 37406926 ~ 37514061 (+)
G1450387 NA other downstream 1407463 41792883 ~ 41890515 (+)
G1451948 LOC570405 other downstream 2943166 43328586 ~ 43459832 (+)
G1451956 LOC106958509 other downstream 2943679 43329099 ~ 43409816 (+)

Expression


Co-expression Network