LOC110493894 (LOC106565283)


Basic Information

Item Value
gene id LOC110493894
gene name LOC106565283
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 41530173 ~ 41547714 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021568466.2
ACCTATTGTGTCCTGGTGTCATCTCAATGTGACCTCTGGCCATGTGGCCCTGTTAACAAAACAAGAACTAATCTCAGTCGCTGACAAGGCAGCAAACAAAACACTGGCTGAGGCTGTCGCTGCCTCGGGCGGCACTCTACTCTGCACAGCACTAAACCAGCCACAGCAGCAGAACCATCTGAGAACTCTcccaggagagagggagcgagagaggcagagagagagagagagaggagtcgaGGATAAGATCCATAATCCATGCTGCGACTGCTGCAAATCTGACATTGGAAGGAAGATTGGGGTTGCTTAGCTTTTGTGTTAAATCTAAAATTGGgaaaggagaatgagagagaaatagCGATACGGggtgagagatgaagagagagaaaaaattaaGCGAGGCAGTTGAAGATCATTTTAAAGGTGGTAGGAGACTGTCGGGAAAGGTTGCCAGTGCTtgtatatgggtgtgtgtgtgcgccaaaTGAGAGAGAATCCGCCCTTACCAGGCAGGGCCGGCCCTCATCTCAGGTGGGATGCAGTGGGAGCGCCTCAGCCACAGACGTGAGAGCAAGAaatgacacacacaggcacacacacacgctcaaaaCAGAGACGGATGTGGAGTACAACGACCTTGCGAGCCACCCGCCGCCCTGAGACAACCACAACAAAAGCAACGCACAGCAAACTGCAGCAGCATCAGCTCCACCAGCACATCCCTTGACAACCCATGGCTCCAGCTCCCTGCGTGTGCCAGGCTGGACTCCCTGTTGGTTCCGGCTCGCCATTTTTTGTTAAGGCTCTTAATGTTTAACCTATTCTTCAGCAAAAGGACCCTGGGTTCAACTGCAATTAAGTACAGCCTAACCCTGGTCTTTTGCTGCCGGTGATTGTGTGGTGTCCGTCCAGTGCTGGACTATTATGCTCCAGCTGGAAGGAGCAAAGCGCAGTTTCCTGTTCTGCCTGGGAATATGCATGCTCATCTGCTCAGTCATCTACCTGAGGGCCATGGCTGGCACAGATCCCCAGGGTCAGAGTGGGCCCCTGGGCTGCAGGCCATTCTCTAAGTACTGCCAAGCTTTCCTCCCCAGCACCAAGGGCTCAACAGCATGGCAACGCCATGACTGCCAGGTGGAGAGCTATCTTCTGAGTATGGGAAATCGAGGTGGGGACCAGGACTGCTCCCGTCTGGTGAGGGAGCTTCACTTCATCACCAGCCCACTGAGCCGGGAGGAGGAAGACTACCCTCTGGCCTTCATCCTCACTGTACACAAGGAGCTGGAGCTGTTGGTGCGCCTGCTTCGGGCCATCTACATGCCGCAGAATGTCTACTGTATCCACGTGGACGCCAAGGCTCCGCGGGAGTACAGGGAAGCCGTGGAGAGCCTTGTGGGCTGCTTTCCCAATGTGTTCCTGGCCAGCCACAGCGAGATGGTGACCTATGCCGGCTTCTCACGGCTGCAGGCCGACATCAACTGCATGAGGGACCTGGCGGCATCGCCTGTGCCCTGGAGGAAGGTGCTCAACTTGTGCGGCCAGGACTTCCCTGTAAAGAGCAACCTGGAGCTGGTGCGCTACATGCAGAGCAAGGAGTGGAGGGACAGGAACATGACCCCGGGCATCAAGCAGCCTGCGGCTATGAGGCACCGGACTCAGCTGCAGTACAGGGAAGTCAGGGGCTCCCACGTGGCCCCCAAGCGCGGAGGCCCAAAGAAAGGTGCTCCGCCCCACAGGCTTCAGATGTACTTTGGTACAGCCTACTACGCACTAACCAGGACCTTTGTGGAGTTTGTACTGAGGAGTCATGTGTCCAGAGACCTGCTAGAGTGGTCCAAGGACGCATTCAGCCCAGATGAGCACTACTGGGTGACGCTCAATCACATTAAAGAAGCGCCAGGAAGTCATGTAGGAGGCGGCTGGGGTGGCGAGATCCGGACAATCAAATGGAGGGACCAAGAGGGGACAGTACACAATGGATGCAAAGGCCGCTATGTTAGGGACATCTGCATCTATGGTCTGGAGGATTTGCAGTGGATCATCGACAGAAACAGCATGTTTGCCAACAAGTTTGAGAGCAAGGCCTTCCCAGAAGCGTTGGACTGCCTGGAGCAGTGGCACAGAGACAAGGTCCTGCAGCAAGCCATGGTTCCCATCCAGTCATGGTGGCAACTTGCCACGCAAGGCAATGCCACCTCTCTTTTCAATGCCACGGTAGGACTTTGACGAGGTTGTGGGGTTCTTCCTGACCAAAATGGATGTAGTTCTCCCAATAGTTGTTGGTTATTGTATCACTTCAGAGGGCTGTACTAAAGTGTGCTGCTAGAGCCTTGATGCATTTGTTGGTTCGTTTAGCTCAAATCTCGAGAAAGTCACTGCTTGGACACGCAATCAAAAGCTAAGCAACAATTATCTAACATTCTTCTCTATTCGTAGGAAACTGTTTGCGAGGGGAGCAGGGAAGACTTGTTATTGACATATCTCAGTTGTCCGGAAACACTTTGTGGTAAATTTAGGCTCTGTGTATCACTAAGAGGCACAGTGGCTGATGCAACC
>XM_021568463.2
ATTGTGTCCTGGTGTCATCTCAATGTGACCTCTGGCCATGTGGCCCTGTTAACAAAACAAGAACTAATCTCAGTCGCTGACAAGGCAGCAAACAAAACACTGGCTGAGGCTGTCGCTGCCTCGGGCGGCACTCTACTCTGCACAGCACTAAACCAGCCACAGCAGCAGAACCATCTGAGAACTCTcccaggagagagggagcgagagaggcagagagagagagagagaggagtcgaGGATAAGATCCATAATCCATGCTGCGACTGCTGCAAATCTGACATTGGAAGGAAGATTGGGGTTGCTTAGCTTTTGTGTTAAATCTAAAATTGGgaaaggagaatgagagagaaatagCGATACGGggtgagagatgaagagagagaaaaaattaaGCGAGGCAGTTGAAGATCATTTTAAAGGTGGTAGGAGACTGTCGGGAAAGGTTGCCAGTGCTtgtatatgggtgtgtgtgtgcgccaaaTGAGAGAGAATCCGCCCTTACCAGGCAGGGCCGGCCCTCATCTCAGGTGGGATGCAGTGGGAGCGCCTCAGCCACAGACGTGAGAGCAAGAaatgacacacacaggcacacacacacgctcaaaaCAGAGACGGATGTGGAGTACAACGACCTTGCGAGCCACCCGCCGCCCTGAGACAACCACAACAAAAGCAACGCACAGCAAACTGCAGCAGCATCAGCTCCACCAGCACATCCCTTGACAACCCATGGCTCCAGCTCCCTGCGTGTGCCAGGCTGGACTCCCTGTTGGTTCCGGCTCGCCATTTTTTGTTAAGGCTCTTAATGTTTAACCTATTCTTCAGCAAAAGGACCCTGGGTTCAACTGCAATTAAGTACAGCCTAACCCTGGTCTTTTGCTGCCGGTGATTGTGTGGTGTCCGTCCAGTGCTGGACTATTATGCTCCAGCTGGAAGGAGCAAAGCGCAGTTTCCTGTTCTGCCTGGGAATATGCATGCTCATCTGCTCAGTCATCTACCTGAGGGCCATGGCTGGCACAGATCCCCAGGGTCAGAGTGGGCCCCTGGGCTGCAGGCCATTCTCTAAGTACTGCCAAGCTTTCCTCCCCAGCACCAAGGGCTCAACAGCATGGCAACGCCATGACTGCCAGGTGGAGAGCTATCTTCTGAGTATGGGAAATCGAGGTGGGGACCAGGACTGCTCCCGTCTGGTGAGGGAGCTTCACTTCATCACCAGCCCACTGAGCCGGGAGGAGGAAGACTACCCTCTGGCCTTCATCCTCACTGTACACAAGGAGCTGGAGCTGTTGGTGCGCCTGCTTCGGGCCATCTACATGCCGCAGAATGTCTACTGTATCCACGTGGACGCCAAGGCTCCGCGGGAGTACAGGGAAGCCGTGGAGAGCCTTGTGGGCTGCTTTCCCAATGTGTTCCTGGCCAGCCACAGCGAGATGGTGACCTATGCCGGCTTCTCACGGCTGCAGGCCGACATCAACTGCATGAGGGACCTGGCGGCATCGCCTGTGCCCTGGAGGAAGGTGCTCAACTTGTGCGGCCAGGACTTCCCTGTAAAGAGCAACCTGGAGCTGGTGCGCTACATGCAGAGCAAGGAGTGGAGGGACAGGAACATGACCCCGGGCATCAAGCAGCCTGCGGCTATGAGGCACCGGACTCAGCTGCAGTACAGGGAAGTCAGGGGCTCCCACGTGGCCCCCAAGCGCGGAGGCCCAAAGAAAGGTGCTCCGCCCCACAGGCTTCAGATGTACTTTGGTACAGCCTACTACGCACTAACCAGGACCTTTGTGGAGTTTGTACTGAGGAGTCATGTGTCCAGAGACCTGCTAGAGTGGTCCAAGGACGCATTCAGCCCAGATGAGCACTACTGGGTGACGCTCAATCACATTAAAGAAGCGCCAGGAAGTCATGTAGGAGGCGGCTGGGGTGGCGAGATCCGGACAATCAAATGGAGGGACCAAGAGGGGACAGTACACAATGGATGCAAAGGCCGCTATGTTAGGGACATCTGCATCTATGGTCTGGAGGATTTGCAGTGGATCATCGACAGAAACAGCATGTTTGCCAACAAGTTTGAGAGCAAGGCCTTCCCAGAAGCGTTGGACTGCCTGGAGCAGTGGCACAGAGACAAGGTCCTGCAGCAAGCCATGGTTCCCATCCAGTCATGGTGGCAACTTGCCACGCAAGGCAATGCCACCTCTCTTTTCAATGCCACGGAAACTGTTTGCGAGGGGAGCAGGGAAGACTTGTTATTGACATATCTCAGTTGTCCGGAAACACTTTGTGGTAAATTTAGGCTCTGTGTATCACTAAGAGGCACAGTGGCTGATGCAACCATAATCACTAAAGAATTCACAAGTCTCCCCCCACGTCAAACAAGGACCTTTACTGACCTGTGGTGCACTTTGACAACAGAACCACATGGGCCACTGTACCAAAGACATTTGTCAACCTTTACAGAAAAAAACAGACAGCTCTGTGGACATGGTTGCTTAGATGTGTTGTAACAACTGGCCACTGTACCTAAGAAACTCGGAAAACCTTTACAAGGGAGAGCAATACAGAGCTCTCTGGACATGGCTGCTTAGATGTGGGAACTTGAATATTGccagttcaacaacaacaaaaactcactcacacactcgaTTACATGTTAAGAATAATCCATTTAAAAGTAAACTATTATATTGTGTGATTGCCTATTGCAAATAAAGTGGCACTCATTTTATGACAGCTTTACATATGTTTGTTATGTTGTAAATGTGAACATTAAGTTAATGCCTCCACTTCAGATAACTGACGTTTTTTCTTGTACTGTACCCAATGATTTATGAAAACTTGCTTGACGGGTCaatgtcctcattgtggtttcACAGTCTTGTTTAATATATTATGTACACACTATTAGAATAGGTATGAAATACACCTTGTTATATTTGGTAACATATGCTTGTTTTCCTTATACTCCAATctcaaaaaatgtaaaacactgacaaaagctctgacgaaggccttgaggctGATATGTAAAGCTTAACAAAGAGCAGTAAACAGGTGTGTTTGTTAAAAGGTATAAATGTTGCGTGTGCTAATCATGACCCGTTCACATTGTTTCCTATTTGTTTTGCAACTACTACAAAAATATGTTAATAATTATTtaaagttacatttaaaaaaatgtcccaCTGTTCTTTGATAATTTCAACTACTGCTAAATGATACCCTCTGAGCTTAGTACTGGCAAAGTACAACTGTATAATAAGCCAAATAGGCCTAAACATTTGCACTGACATTAAATATTGTTACATTGTGTATGTTGTCAATTTAAGAGAACAGGGTACAATAAATGTGAACTGCCACTTTGACATCAAACCATATTTCAATTGATTTCAAGAAATGTAACATTATTAAGGGCTTGAAAGTGGAAATCATACAGcatgcactttttttttttacccagaaCATGTTTGTTCACTGTAAAGGAAGTTCAGCTATTCACTGAAATTCCCAAATGCTTTGAATACATTAAACATTTGTTATAAATTCA
>XM_021568464.2
tcctctgtgtgtgtgtaacacttgGAGGTAATGGTAGATTGTATTTGCCCTGAATGAAAATGTTGCTGAGGGTAGTATGCAATGATGTGTGTGGTATTAAACATTCCCACAATAAGCTTTCAATTACAAATGCCTAGGAGTGATGGAATATCTGGTTAATTACTCAATCCATTAACAGGTGATAAAATAAAAGCATGGCTCCATGAGAACTAGCAGTGTTTAATCCAACTAAATGGCAACAGGTggatcacatttaaaaaaaaatattgcacaCTGGATGACACACTGCTATCCACACAGTTTGCTTTGTTTCTAAATAAACAACGCCAGTTGACGGTTTCATTTCTCGTGAAAAAGTTAACTACAAACAATAAATCAATGGCAGtttgccataagcaaacaagacggCTCTCTCATAATCAGTAAGCCAAGAATGAGATAAATCCCTGGGGGTTCTATTCAACTACCTGTCTGTTGACATAATTACTGCATCTTGTTGTTTTTTTCCTTGATGTCACAATGGCCTGTGTAGTTGATGTGGGAGACCCTTGGGATTTCATTACATATTCACATAACAAGCCCAATGTCCAAATCTCTTTAACAGGCTGCCACTGATTATCGGGTTCTGGCAAGTCTCCGGTGAATAAGTCTCTCTAGTGTGCTATCAGGCAACTGCAGAGGGTGTTATAAGAGCAACTGGATTCTTATTGATTCTCCACCAGTGGTAGTGCAGTGAATGAGCGAAGCAGTGTAGCTCACTTCTTACAAAATATAACCAATCTGTTAGCAGGAACAACAGTACAGCCTAACCCTGGTCTTTTGCTGCCGGTGATTGTGTGGTGTCCGTCCAGTGCTGGACTATTATGCTCCAGCTGGAAGGAGCAAAGCGCAGTTTCCTGTTCTGCCTGGGAATATGCATGCTCATCTGCTCAGTCATCTACCTGAGGGCCATGGCTGGCACAGATCCCCAGGGTCAGAGTGGGCCCCTGGGCTGCAGGCCATTCTCTAAGTACTGCCAAGCTTTCCTCCCCAGCACCAAGGGCTCAACAGCATGGCAACGCCATGACTGCCAGGTGGAGAGCTATCTTCTGAGTATGGGAAATCGAGGTGGGGACCAGGACTGCTCCCGTCTGGTGAGGGAGCTTCACTTCATCACCAGCCCACTGAGCCGGGAGGAGGAAGACTACCCTCTGGCCTTCATCCTCACTGTACACAAGGAGCTGGAGCTGTTGGTGCGCCTGCTTCGGGCCATCTACATGCCGCAGAATGTCTACTGTATCCACGTGGACGCCAAGGCTCCGCGGGAGTACAGGGAAGCCGTGGAGAGCCTTGTGGGCTGCTTTCCCAATGTGTTCCTGGCCAGCCACAGCGAGATGGTGACCTATGCCGGCTTCTCACGGCTGCAGGCCGACATCAACTGCATGAGGGACCTGGCGGCATCGCCTGTGCCCTGGAGGAAGGTGCTCAACTTGTGCGGCCAGGACTTCCCTGTAAAGAGCAACCTGGAGCTGGTGCGCTACATGCAGAGCAAGGAGTGGAGGGACAGGAACATGACCCCGGGCATCAAGCAGCCTGCGGCTATGAGGCACCGGACTCAGCTGCAGTACAGGGAAGTCAGGGGCTCCCACGTGGCCCCCAAGCGCGGAGGCCCAAAGAAAGGTGCTCCGCCCCACAGGCTTCAGATGTACTTTGGTACAGCCTACTACGCACTAACCAGGACCTTTGTGGAGTTTGTACTGAGGAGTCATGTGTCCAGAGACCTGCTAGAGTGGTCCAAGGACGCATTCAGCCCAGATGAGCACTACTGGGTGACGCTCAATCACATTAAAGAAGCGCCAGGAAGTCATGTAGGAGGCGGCTGGGGTGGCGAGATCCGGACAATCAAATGGAGGGACCAAGAGGGGACAGTACACAATGGATGCAAAGGCCGCTATGTTAGGGACATCTGCATCTATGGTCTGGAGGATTTGCAGTGGATCATCGACAGAAACAGCATGTTTGCCAACAAGTTTGAGAGCAAGGCCTTCCCAGAAGCGTTGGACTGCCTGGAGCAGTGGCACAGAGACAAGGTCCTGCAGCAAGCCATGGTTCCCATCCAGTCATGGTGGCAACTTGCCACGCAAGGCAATGCCACCTCTCTTTTCAATGCCACGGAAACTGTTTGCGAGGGGAGCAGGGAAGACTTGTTATTGACATATCTCAGTTGTCCGGAAACACTTTGTGGTAAATTTAGGCTCTGTGTATCACTAAGAGGCACAGTGGCTGATGCAACCATAATCACTAAAGAATTCACAAGTCTCCCCCCACGTCAAACAAGGACCTTTACTGACCTGTGGTGCACTTTGACAACAGAACCACATGGGCCACTGTACCAAAGACATTTGTCAACCTTTACAGAAAAAAACAGACAGCTCTGTGGACATGGTTGCTTAGATGTGTTGTAACAACTGGCCACTGTACCTAAGAAACTCGGAAAACCTTTACAAGGGAGAGCAATACAGAGCTCTCTGGACATGGCTGCTTAGATGTGGGAACTTGAATATTGccagttcaacaacaacaaaaactcactcacacactcgaTTACATGTTAAGAATAATCCATTTAAAAGTAAACTATTATATTGTGTGATTGCCTATTGCAAATAAAGTGGCACTCATTTTATGACAGCTTTACATATGTTTGTTATGTTGTAAATGTGAACATTAAGTTAATGCCTCCACTTCAGATAACTGACGTTTTTTCTTGTACTGTACCCAATGATTTATGAAAACTTGCTTGACGGGTCaatgtcctcattgtggtttcACAGTCTTGTTTAATATATTATGTACACACTATTAGAATAGGTATGAAATACACCTTGTTATATTTGGTAACATATGCTTGTTTTCCTTATACTCCAATctcaaaaaatgtaaaacactgacaaaagctctgacgaaggccttgaggctGATATGTAAAGCTTAACAAAGAGCAGTAAACAGGTGTGTTTGTTAAAAGGTATAAATGTTGCGTGTGCTAATCATGACCCGTTCACATTGTTTCCTATTTGTTTTGCAACTACTACAAAAATATGTTAATAATTATTtaaagttacatttaaaaaaatgtcccaCTGTTCTTTGATAATTTCAACTACTGCTAAATGATACCCTCTGAGCTTAGTACTGGCAAAGTACAACTGTATAATAAGCCAAATAGGCCTAAACATTTGCACTGACATTAAATATTGTTACATTGTGTATGTTGTCAATTTAAGAGAACAGGGTACAATAAATGTGAACTGCCACTTTGACATCAAACCATATTTCAATTGATTTCAAGAAATGTAACATTATTAAGGGCTTGAAAGTGGAAATCATACAGcatgcactttttttttttacccagaaCATGTTTGTTCACTGTAAAGGAAGTTCAGCTATTCACTGAAATTCCCAAATGCTTTGAATACATTAAACATTTGTTATAAATTCA

Function

NR:

description
beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase 7-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021568466.2 False 2556 mRNA 0.53 4 41530173 41546503
XM_021568463.2 False 3541 mRNA 0.48 5 41530177 41547714
XM_021568464.2 True 3484 mRNA 0.45 5 41531050 41547714

Neighbor

gene id symbol gene type direction distance location
LOC110493893 cdh22 coding upstream 445354 40767465 ~ 41084819 (+)
LOC110493184 LOC106565288 coding upstream 1055484 40448527 ~ 40474689 (+)
LOC118940426 LOC106565291 coding upstream 1144753 40383185 ~ 40385420 (+)
LOC118940425 dnttip1 coding upstream 1151224 40367757 ~ 40378949 (+)
LOC110493889 LOC106565080 coding upstream 1162433 40312876 ~ 40367740 (+)
LOC110493897 LOC106565282 coding downstream 94160 41641874 ~ 41706180 (+)
LOC110493901 LOC106565279 coding downstream 274648 41822362 ~ 41887681 (+)
LOC110493904 LOC106565276 coding downstream 482276 42029990 ~ 42108742 (+)
LOC110493907 LOC106565273 coding downstream 781851 42329565 ~ 42407845 (+)
LOC110493908 LOC106565271 coding downstream 887614 42435328 ~ 42516956 (+)
G1450093 NA non-coding upstream 120316 41409621 ~ 41409857 (+)
G1450071 NA non-coding upstream 139959 41390006 ~ 41390214 (+)
G1449866 NA non-coding upstream 292029 41237833 ~ 41238144 (+)
G1449860 NA non-coding upstream 298083 41231885 ~ 41232090 (+)
G1449858 NA non-coding upstream 298359 41231585 ~ 41231814 (+)
G1450363 LOC106565281 non-coding downstream 181710 41729424 ~ 41730184 (+)
G1450384 NA non-coding downstream 209015 41756729 ~ 41759882 (+)
G1450421 NA non-coding downstream 249362 41797076 ~ 41798952 (+)
G1450425 NA non-coding downstream 256135 41803849 ~ 41804516 (+)
G1450385 NA non-coding downstream 340357 41888071 ~ 41889157 (+)
G1447998 NA other upstream 1729937 39799936 ~ 39800236 (+)
pmepa1 pmepa1 other upstream 2103273 39342991 ~ 39426900 (+)
G1446149 NA other upstream 3219309 38309129 ~ 38310864 (+)
rbl1 rbl1 other upstream 3941446 37538220 ~ 37588797 (+)
G1450387 NA other downstream 245169 41792883 ~ 41890515 (+)
G1451948 LOC570405 other downstream 1780872 43328586 ~ 43459832 (+)
G1451956 LOC106958509 other downstream 1781385 43329099 ~ 43409816 (+)
G1452359 NA other downstream 1934546 43482260 ~ 43483693 (+)

Expression


Co-expression Network