LOC110493897 (LOC106565282)


Basic Information

Item Value
gene id LOC110493897
gene name LOC106565282
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 41641874 ~ 41706180 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021568477.2
TTTTCTATTTGCATAACATCACTTCCCTACCAGCGTCAAAGAAAACACGCTCCAGAAGGTGTATATGACACTAATCGAGAAACGGCGCAATGTTTTGGATGAAAACGTACCCTTAGATTTGGTTGATAGCTGCCATTTCGGGTTTTTCGACCATACACGAACGATTCAAGAGGGCCAAACGAAGTGCGCATACAATTCTAAAATCTACAGTCATCACTTTGAAGAAGATATATGCATAGACAGTGAGAAAGGACGTGCTGTGACTCCAGGTTGACCATTGAGCGTTCCAGTTTCATCTGTGGAAGACGTTTTGCTCTAGAGTGTTGAACATACTACGTGATATGGAGAGACGACACTGTTGAAAAAAATACTGGCATTTTATTTTTCCTGACCTAGACACAAATCATGGAAAGCTGACGGCGAGGACCTTGAGTGACACCCTTGCCAGGGAAGAAAACCCTCTCTTTACTGAGTCAAGGACACTACGACTCCATACCAGACTCTTCCTTCATCTGCAAATCAGCTGACCTAAGAGCTGTCATGGCGGCGTACGGACAGACCCAGTACAGCCCTGCCCTCCAGTCTGCGGGACCCTACACACCGTATACATACCACACCCAGGGCTACAGCATGCCCTCATACAACATTAAGACAGAAGATGGCCTCAGCcactctccaggacagaacagtCTGCTGAGCTACTCCAACTTCAGTAGCACTCCCCCCAGCCAGGGCCTCTACAGTTACTCCACACccgGTAGCAGTATTTCTTCGGGGATTTTCCAGGGAGCCAACCCCATCACAGGCGCAACTCCATTCAACCCCACACAACAGGACTTCTCAGCGTACTCTAGCTACAGCCAAAGCCAGTACTCGCCATACTACaacacacactacaacagcccGTACCTCGCAAGCAGCAACATCAGCCCTAGCGCCATCACCACGCCCATACCCTATCAGCATCCAGAACACCCTCCCGTGGTGCCCAATCACAGCCCCGAGTCCCACCCAGgagaGTACCATCCGCCCCCTAGCCCCCCCACCCCAGGGAAAGAGCCAGAGGGGGTGCCAGCCAGACGGAGCTCAGATGGGAAACTGAGGGGCAGGAAAAGAGTCAGTGACCCACAGCCTCCCCTGGACTCAGATATAGAGcgtgtgtttgtgtgggacCTTGACGAGACCATCATCATTTTCCACTCTTTGCTCACAGGGAGCTTCTCCACACGATTTGGCAAGGACTCGTCCAAGGCAGTGTCGCTGGGGCTGTGGATGGAGGAGATGATCTTCAACTTGGCCGACTCGCGGCTATTTTTCAACGACCTGGAGGAATGTGACCAAGTTCATATTGATGACGTGGCGTCAGACGACAATGGGCAGGACTTGAGCATGTATAACTTTGGCACAGACGGATTCCAGAGCCCTGCGGGTGCCGGTACTCTGTGCCTGGGCTCAGGTGTCCATGGTGGGGTGGACTGGATGAGGAAACTAGCCTTCCGCTACCGGAGAGTAAAGGAGATCTACAACACCTACAAGAACAACGTGGGAGGTTTGGTGGGCAGTCCCAAGCGGGAGGAATGGCTGCAGCTGCGGAGGGAGATGGAGGTCCTGACAGATCTGTGGCTGACCCAGGCTGTCAAGGCCCTGGCCCTCATTAACTCCAGACCAAACTGTGTGAATGTGCTGGTGACCACCACCCAGTTGATCCCAGCCCTGTCCAAGGTCCTGCTCTATGGTCTGGGCTCAGCGTTCCCCATAGAGAACATCTACAGTGCCACCAAGACAGGGAAAGAGAGCTGCTTTGAGCGTGTGGCCCAGAGGTTCGGCCGGCGAGCAGTGTACGTGGTCATAGGGGACGGAGTGGAGGAAGAGTCTGTAGCCAAGAAGAAGAACATGCCTTTCTGGAGAGTGTCGTGTCGGCCTGACCTGGAGGCTCTAAGTCATGCACTGGAGCTGGACTACCTCTAGTGGGCGCTATAACAATCTCATCATGCCTTTAGCCAGTTCCTGCCTGGTGATGCCGCTTCCTGTCCAATGGACCAATTGGGTTGAGGGCAGCGACGATTCACCACCATACAAAAGCAAAGAATGACGGACCAATCTTTGTATCAGCAGGGAAACGCAATTGTTACTGGAAATTGTACATGTGCTTTCACCCGTTCACACAGGGACTTTTACATGTGAAAGGTATCCCACTTTGGAACTTTAGAGCGTTGCACTGAAAATAATGACCaaggtcagggatgggcaactggtggcctcagcagtttttctcttgttatgtcaatTAGGCCATATCAGCTAAAatgttttagattggtaaatttgTCTATCGGTCAGCTATCTAAACCAGcaatcatggttgaattaccgGCCGGGGGccaccattgattttgttagtcagtctcactcagatatcatattaaatactgcaaacatttctctccagcctatggcaaaatgtgtagaattacaaaAATGTCGCTGTTAAACAGCAAATGTTCTTCAccgcccatggcaaaatgagtagaattgcaggaaatgtgctacaaaattgctaaatcttctttccgccccatggcaaaatgtgtagaattgtagcaaACTTTCTTTAAAGCTCCacattttctctatgccccatggcaaaatgtgtagaattgcacgaAATAAACTATAACATTTTAAAACAATGTCTCTCCGCTGTCAAGAGGAGGGCTGCTAAAATGCTTTGCTCTCAATGTGGTTGGTGTGACCCGCAAGCAACTACCATCCCTCATAATGAGTTCAGTTTCTTGTGGCCCCCAGACCCATCAAAGTTACCCATCCCTGACCTAGgtgatctacagttgaagtcggaaatttacatacaccttagcaaaatacatttaactcagtttgtcacaattcctgacaatccTCGTAAAAAATcactgtcttatgtcagttaggatcaccactttat
>TU1659644
AGGACGTGCTGTGACTCCAGGTTGACCATTGAGCGTTCCAGTTTCATCTGTGGAAGACGTTTTGCTCTAGAGTGTTGAACATACTACGTGATATGGAGAGACGACACTGTTGAAAAAAATACTGGCATTTTATTTTTCCTGACCTAGACACAAATCATGGAAAGCTGACGGCGAGGACCTTGAGTGACACCCTTGCCAGGGAAGAAAACCCTCTCTTTACTGAGTCAAGGACACTACGACTCCATACCAGACTCTTCCTTCATCTGCAAATCAGCTGACCTAAGAGCTGTCATGGCGGCGTACGGACAGACCCAGTACAGCCCTGCCCTCCAGTCTGCGGGACCCTACACACCGTATACATACCACACCCAGGGCTACAGCATGCCCTCATACAACATTAAGACAGAAGATGGCCTCAGCcactctccaggacagaacagtCTGCTGAGCTACTCCAACTTCAGTAGCACTCCCCCCAGCCAGGGCCTCTACAGTTACTCCACACccgGTAGCAGTATTTCTTCGGGGATTTTCCAGGGAGCCAACCCCATCACAGGCGCAACTCCATTCAACCCCACACAACAGGACTTCTCAGCGTACTCTAGCTACAGCCAAAGCCAGTACTCGCCATACTACaacacacactacaacagcccGTACCTCGCAAGCAGCAACATCAGCCCTAGCGCCATCACCACGCCCATACCCTATCAGCATCCAGAACACC

Function

NR:

description
eyes absent homolog 2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021568477.2 False 2962 mRNA 0.49 16 41641874 41706180
TU1659644 True 727 TUCP 0.52 7 41642123 41693718

Neighbor

gene id symbol gene type direction distance location
LOC110493894 LOC106565283 coding upstream 94160 41530173 ~ 41547714 (+)
LOC110493893 cdh22 coding upstream 557055 40767465 ~ 41084819 (+)
LOC110493184 LOC106565288 coding upstream 1167185 40448527 ~ 40474689 (+)
LOC118940426 LOC106565291 coding upstream 1256454 40383185 ~ 40385420 (+)
LOC118940425 dnttip1 coding upstream 1262925 40367757 ~ 40378949 (+)
LOC110493901 LOC106565279 coding downstream 116182 41822362 ~ 41887681 (+)
LOC110493904 LOC106565276 coding downstream 323810 42029990 ~ 42108742 (+)
LOC110493907 LOC106565273 coding downstream 623385 42329565 ~ 42407845 (+)
LOC110493908 LOC106565271 coding downstream 729148 42435328 ~ 42516956 (+)
LOC110493909 arfrp coding downstream 822569 42528749 ~ 42532546 (+)
G1450093 NA non-coding upstream 232017 41409621 ~ 41409857 (+)
G1450071 NA non-coding upstream 251660 41390006 ~ 41390214 (+)
G1449866 NA non-coding upstream 403730 41237833 ~ 41238144 (+)
G1449860 NA non-coding upstream 409784 41231885 ~ 41232090 (+)
G1449858 NA non-coding upstream 410060 41231585 ~ 41231814 (+)
G1450363 LOC106565281 non-coding downstream 23244 41729424 ~ 41730184 (+)
G1450384 NA non-coding downstream 50549 41756729 ~ 41759882 (+)
G1450421 NA non-coding downstream 90896 41797076 ~ 41798952 (+)
G1450425 NA non-coding downstream 97669 41803849 ~ 41804516 (+)
G1450385 NA non-coding downstream 181891 41888071 ~ 41889157 (+)
G1447998 NA other upstream 1841638 39799936 ~ 39800236 (+)
pmepa1 pmepa1 other upstream 2214974 39342991 ~ 39426900 (+)
G1446149 NA other upstream 3331010 38309129 ~ 38310864 (+)
rbl1 rbl1 other upstream 4053147 37538220 ~ 37588797 (+)
G1450387 NA other downstream 86703 41792883 ~ 41890515 (+)
G1451948 LOC570405 other downstream 1622406 43328586 ~ 43459832 (+)
G1451956 LOC106958509 other downstream 1622919 43329099 ~ 43409816 (+)
G1452359 NA other downstream 1776080 43482260 ~ 43483693 (+)
G1452362 NA other downstream 1784994 43491174 ~ 43492068 (+)

Expression


Co-expression Network