LOC110493901 (LOC106565279)


Basic Information

Item Value
gene id LOC110493901
gene name LOC106565279
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 41822362 ~ 41887681 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036949891.1
CATCACTGCTGGAGTACGGTTGCAGATCAACATCACTGTTGCAGCACTGTTGCCTCGGTTTAGCAGGGCAGGGCGACACTTTTGAACCCATTGTCAAAAGGCTACACTTTCCAACGAGCAGGTGTCTGTCTACAAGTCGGCTATACATCTTCCACATCAAGATGTTGGCGTGCACAAAGATGATCACTATGTGCCTTCAGTCGGCGAAAAATAAGCATCTTCGCTCTCAGCAGGATCAACCGCAGCCACTGCAAAGCCCTGTTAATGGACTTCCAATTTTCAAAGATATTTTCTGCCGCGCTGACAAAAACGATGATGGAAAACTGTCGTTTGATGAGTTCAATGCTTATTTCGCAGACGGGATTCTCACCACTGAGGAGTTGCAGGAGCTCTTCTACTCCTTAGATGGGCAGCAGAATAACAACCTAGATACCGACAAACTAtcagATGACTTTGCTCAACACTTGGGGGGATATGTGAATGTCCTCTCTGCTCTGGAGATCCTAAATGTTGCCATCTTGGAGGCTATGAACAAAACTAAAAAGGAGTACCAGGACTCCTCTGTGCTGGGACAGTTTGTGACCCGCTTCATGCTGAGGGAGACCTCCAGCCAGCTGCTCTCTCTCCAAATGTCCCTGCAGTGTGCCATGGAGGCCGTggaagagcagagcaggcccGCACCGAGAGCGGTGGAGGTGGCGGAGCATCCCTCAGCGCAGAGAAACAGCAGACGATGTGGCCGCAAGTTTCAGAAGAACATGTGCCTCTCCCCTATCCACCCCTACTCAGGCATCCTCACTACAGgAGTGACCATGGAGATTGATGACCACTGGTGCTCCCAGATCAACAGGCTCCAGCAGCTATTGGACAAGCTGGAGTGGCAGGGTCCAAAGTTGGAACCTCTGAAAGAAGATACGCTGGCCAGTACATACAAATCTAACATCCTGCTGGTGCAGACGCAGATGACGGCAACGGAGGACCTCGAGGAGTTCCAGAAGCTGCTCAAGAGCTATGTGGACGCCACGTCCAACCACAGCGACAACTTGCAtGTGTCTATCCAGAAGCTTGCGGGAAAGTCGTGCTACATAATGTATGAGTTTTGGCAGGATCGTATCTCctggatgagCTACCTGCAGTCCAATGCCAGTAAGAAATTCCAGCGCTGTGTCATTGATACATTGGAGGATTCCGAGCTTGTGTCTACCATGCTGCTCCCAGCATCCTGGTGGATTATGACTGACTAACTAGCAGCAGACCATGTATCCCGtccccacatacacacaacacaacctcaaGACAAGAAATTCAACATTTCATCCAAGTGTTTCGGTTCAAAGCTACCGGACACGGAACACTGCATTAAAACAGCATCTTGCGGCATCTTTCttatgtaccagtcaaaagtttgcacacacctactcattcaagggtttttctttgttttgacTATTATCT

Function

NR:

description
N-terminal EF-hand calcium-binding protein 1-like isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036949891.1 True 1455 mRNA 0.49 13 41822362 41887681

Neighbor

gene id symbol gene type direction distance location
LOC110493897 LOC106565282 coding upstream 116182 41641874 ~ 41706180 (+)
LOC110493894 LOC106565283 coding upstream 274648 41530173 ~ 41547714 (+)
LOC110493893 cdh22 coding upstream 737543 40767465 ~ 41084819 (+)
LOC110493184 LOC106565288 coding upstream 1347673 40448527 ~ 40474689 (+)
LOC118940426 LOC106565291 coding upstream 1436942 40383185 ~ 40385420 (+)
LOC110493904 LOC106565276 coding downstream 142309 42029990 ~ 42108742 (+)
LOC110493907 LOC106565273 coding downstream 441884 42329565 ~ 42407845 (+)
LOC110493908 LOC106565271 coding downstream 547647 42435328 ~ 42516956 (+)
LOC110493909 arfrp coding downstream 641068 42528749 ~ 42532546 (+)
LOC110493911 LOC106565269 coding downstream 712039 42599720 ~ 42632365 (+)
G1450425 NA non-coding upstream 17846 41803849 ~ 41804516 (+)
G1450421 NA non-coding upstream 23410 41797076 ~ 41798952 (+)
G1450384 NA non-coding upstream 62480 41756729 ~ 41759882 (+)
G1450363 LOC106565281 non-coding upstream 92178 41729424 ~ 41730184 (+)
G1450093 NA non-coding upstream 412505 41409621 ~ 41409857 (+)
G1450385 NA non-coding downstream 390 41888071 ~ 41889157 (+)
G1450462 NA non-coding downstream 2964 41890645 ~ 41894245 (+)
G1450473 NA non-coding downstream 29308 41916989 ~ 41917232 (+)
G1450474 NA non-coding downstream 29815 41917496 ~ 41917805 (+)
G1450487 NA non-coding downstream 57784 41945465 ~ 41945755 (+)
G1447998 NA other upstream 2022126 39799936 ~ 39800236 (+)
pmepa1 pmepa1 other upstream 2395462 39342991 ~ 39426900 (+)
G1446149 NA other upstream 3511498 38309129 ~ 38310864 (+)
G1451948 LOC570405 other downstream 1440905 43328586 ~ 43459832 (+)
G1451956 LOC106958509 other downstream 1441418 43329099 ~ 43409816 (+)
G1452359 NA other downstream 1594579 43482260 ~ 43483693 (+)
G1452362 NA other downstream 1603493 43491174 ~ 43492068 (+)
G1452369 NA other downstream 1653983 43508719 ~ 43565770 (+)

Expression


Co-expression Network