LOC110493904 (LOC106565276)


Basic Information

Item Value
gene id LOC110493904
gene name LOC106565276
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 42029990 ~ 42108742 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021568493.2
aagaggagagagagagagttggaggagggGGCTGTGCCGCTTGGCATCTCCCCCACCCCTATCTCTTTACACGACCACCGAGTGCCAACCCGTCTAGTTATTCCAGGAATGTGTTGAACATGGCTGCCACGATGAAGGCACAGAAAACGGGACTGTTAGAACTTCGAGTTACCGTGGACCGTTGGATCCGTGTATTAGCCACACTTACGGAGGAGACTTTAACCGTGAGCCCCGGAGAGGTCGCCGAAGACATAGTTAAACCCAACCCAACTCCTGCCGGTGCCATTAACGGAGACCCGGCCAACTTCAGCTCCTCTCCGGTCCCAGAAACAATCACCAACGTTAAGCGCACGGTGCGAGTTACCAAGCAAGATGTGGGAGGACTTGGAATTAGTATTAAAGGTGGAAAAGAGAACAAAATGCCCATTCTCATCTCGAAGATCTTCAAGGGGTTGGCAGCTGACCAGACGGAGGCCCTGTACGTGGGTGACGCCATCCTGTCGGTCAACAGCGCCGACCTCCGGGACGCCACACACGACGAGGCCGTGCAGGCCCTGAAGAAGACGGGCAAAGAAGTCATCCTAGAGGTGAAATACATCAAGGAGATGTCGGCCTTTTTTAAGAACACCTCCCCCGGTGCACCCTTACCCTGGGACTCCCCCCCTGCCACATCACAGAAAGGCGCACACGCCCCTGCCGAGCTGAAGGAGGCCAGGACCATATCGCTGAAAATGTGCCAGGTGACTAGGAAACAGTGCCCCCCGGACACAGAGAACAGGTACTTTGAGGTGATCTCGTCCAGCAGAAAGAGCTCAGTGTTCCTGAGGGCCAAGGACCCCGTCATGGCCCAGTCCTGGTACAACGCCATCCAGGTCGGGGTCTTGGGCCTGGTTCCCCGCATCAGGGATGAGTTGAGGGCCATGCAGGCGGACCTGGAGGTCAAACACATGGGCTGGATCACTGAACAGGCGACCCAGGGTCCAGAGAGACCGTTGCTGGCTCTGCTGACTGAGAGAGACCTGTTGCTATACCCCACCCTGCCTGACACTAAAGACAGCATCAACAGCCCAGTCAAGAGCCACCCGCTCATCACAACCAGACTGGTCCACTCGGGTCCGGGGAAGAGCTCTCCCCTGCTGGATTCTGAGCTCTCCTTTGGGCTGCGCATGGGCACCAAGCAGGGTGTAGAGACCCACGTGTTCCGGGTGAACTCGGCCAAGGAGCTTTCAACCTGGACCCACATGCTGGTGGACGGCTGCCACAACGCCGCAGAGCTCATCCAGGAAGTCACCACAGCCTGCAGCTGGAACGGGAAGGAGTGCAACCTGGGAGTTCACATCAACGAGGGCTTTTCCCTGTTCACCGAGGAGATGGGCATCAGGAAGACGGTGCTCCTCCAGCAGCCCTTCGAGCGCCTGCGCATGTCCTCCGACGACGGCGTGCGCATGATCTTCCTCGACTTCGGAGGGCCCGAGGCGGAGATTGTGAGTTGGACTGATGACTGCAACTGGACCTCCACTCCTGTCCCAAGACCATGGTGTTCATCATCCACTCCTTCCTCTCCGCTAAGGTCAAGCGGCTAGGCTTGTTAGCATGATGATAACATTTTAACCTCCCCACCCACCCTGAAAAACCACCGAACCACCCATGCGTATTTACACGCAGCCACGACTAACGTTAGGAGGATGTGACGTCACTGCAGAGGATATGATGTCACGGCTCTGTTTCAAACCTCACCAAACTCTTACCAAGGGCCACTGTTGGTCAGAATCAAAGTGGAAAGCGAGTGGATTGAAGACATACTGTACCTGCAATAATGATGCTTTCAAAGGTCCTTATCAGTCGTAAGGGCAACATCTGTCCTAAGAGGATATTAACTTACGAGAGCCAAACTTACACTTATGACAGCCTACATAGCACTGTTGCCAAGCTCAAGGGGCTAAATGTTTGAATTGTATTTGTTTCATGGGTCATAGCATGTCCATTGTCATAAGTGATAAGTCAATTGATATAACCTCTCACGAGTGGTTATAACAGGCACCATTGATTTTACAACGGCTTCAAAAAAAAGTTACACAATTTAAAACTGTTACATGCACTGTTGACTGATTGTGTTGAACTATTCAGAGGGtttactgtttggccataacatTTTTTGGGAAACATTATTTTAAGTCTGCTTTTAGAGCAGTTTTCCAAGTACCGATTCAGATACATTTTGAGTGCAGCGAAAAGCCTTTTGACTCTGCATTTCTTTAGTAGGTTCATAAATGTTTCCCGTAACCAATATCAACATGAAGATAACTTCAAATGTGCTTTCTGACATATTGTTTAACACCTAAATCCAGACATTTGGAAACAGGTATCAAACGGATTGTTGCCACTGTAATTTCACTTAACAAAAAGCTCCACCCTCCAACTAACTGGAATGACTTTATGCATACGATTACTATGCatttatagatacagtatatacagaattTGACGCGTTATCATTTCTGTCGATGGAGTGCATACTACGACCCCTTTTGATTTAGGAAGTTGTCCCTCAAAACTAGATCCTTTTCACTTTGAGGAAAGATCGATGGAATGGTTCTCCCATAGGTATAACCAGCCATATAGGTGTATGTAACTGTATAGTATACGTATATGTATGTATTTGGCTCTGGGTATAACATTATCAATGAATACATTGAAAGTGTTTCCTATTAAAAGAGTTATCAGAGTATATGCTACAGGTACTGAGTTGTGTTTATATTTAAACCTCTAAGTCCTTACAAAGCTAGTTGAATACACATTATGTTCTCTTCTTAACAACTACAGCCAAAATCGCTGATGCATTTGAAAGATATAAGCTTGTTGGGGACTCATGATGCAGTTTTTATACAGTGTTAGTCCTTTTGTTAGGTGTGTGCATTTACAGAAGTCAAACCAACTTAAAATGAACAGAAATGGGGTCTATAGTTTACATGACCATGTATGTGTTCAATTACCCCCATTTCTTTTGTGTCAACAGACTATTCACTACCCGTGGCCTTTGCTCTACAATGCTAAACAAACCtatattaatatatatttcaAACTAAAACTTGTTTGCTTTCAATAAGAAACATTTATTGTATATTCTTATTTAAACAAAAAGGTGTGCCTTGCAGGGTTGTTTGTATATAAAAGTGTAATAAACTTTGATTGTTAACTTTTACAGGGTTTTATTGGTA
>XM_021568494.2
agaggagagagagagagttggaggagggGGCTGTGCCGCTTGGCATCTCCCCCACCCCTATCTCTTTACACGACCACCGAGTGCCAACCCGTCTAGTTATTCCAGGAATGTGTTGAACATGGCTGCCACGATGAAGGCACAGAAAACGGGACTGTTAGAACTTCGAGTTACCGTGGACCGTTGGATCCGTGTATTAGCCACACTTACGGAGGAGACTTTAACCGTGAGCCCCGGAGAGGTCGCCGAAGACATAGTTAAACCCAACCCAACTCCTGCCGGTGCCATTAACGGAGACCCGGCCAACTTCAGCTCCTCTCCGGTCCCAGAAACAATCACCAACGTTAAGCGCACGGTGCGAGTTACCAAGCAAGATGTGGGAGGACTTGGAATTAGTATTAAAGGTGGAAAAGAGAACAAAATGCCCATTCTCATCTCGAAGATCTTCAAGGGGTTGGCAGCTGACCAGACGGAGGCCCTGTACGTGGGTGACGCCATCCTGTCGGTCAACAGCGCCGACCTCCGGGACGCCACACACGACGAGGCCGTGCAGGCCCTGAAGAAGACGGGCAAAGAAGTCATCCTAGAGGTGAAATACATCAAGGAGATGTCGGCCTTTTTTAAGAACACCTCCCCCGGTGCACCCTTACCCTGGGACTCCCCCCCTGCCACATCACAGAAAGGCGCACACGCCCCTGCCGAGCTGAAGGAGGCCAGGACCATATCGCTGAAAATGTGCCAGGTGACTAGGAAACAGTGCCCCCCGGACACAGAGAACAGGTACTTTGAGGTGATCTCGTCCAGCAGAAAGAGCTCAGTGTTCCTGAGGGCCAAGGACCCCGTCATGGCCCAGTCCTGGTACAACGCCATCCAGGTCGGGGTCTTGGGCCTGGTTCCCCGCATCAGGGATGAGTTGAGGGCCATGCAGGCGGACCTGGAGGTCAAACACATGGGCTGGATCACTGAACAGGCGACCCAGGGTCCAGAGAGACCGTTGCTGGCTCTGCTGACTGAGAGAGACCTGTTGCTATACCCCACCCTGCCTGACACTAAAGACAGCATCAACAGCCCAGTCAAGAGCCACCCGCTCATCACAACCAGACTGGTCCACTCGGGTCCGGGGAAGAGCTCTCCCCTGCTGGATTCTGAGCTCTCCTTTGGGCTGCGCATGGGCACCAAGCAGGGTGTAGAGACCCACGTGTTCCGGGTGAACTCGGCCAAGGAGCTTTCAACCTGGACCCACATGCTGGTGGACGGCTGCCACAACGCCGCAGAGCTCATCCAGGAAGTCACCACAGCCTGCAGCTGGAACGGGAAGGAGTGCAACCTGGGAGTTCACATCAACGAGGGCTTTTCCCTGTTCACCGAGGAGATGGGCATCAGGAAGACGGTGCTCCTCCAGCAGCCCTTCGAGCGCCTGCGCATGTCCTCCGACGACGGCGTGCGCATGATCTTCCTCGACTTCGGAGGGCCCGAGGCGGAGATTCAACTGGACCTCCACTCCTGTCCCAAGACCATGGTGTTCATCATCCACTCCTTCCTCTCCGCTAAGGTCAAGCGGCTAGGCTTGTTAGCATGATGATAACATTTTAACCTCCCCACCCACCCTGAAAAACCACCGAACCACCCATGCGTATTTACACGCAGCCACGACTAACGTTAGGAGGATGTGACGTCACTGCAGAGGATATGATGTCACGGCTCTGTTTCAAACCTCACCAAACTCTTACCAAGGGCCACTGTTGGTCAGAATCAAAGTGGAAAGCGAGTGGATTGAAGACATACTGTACCTGCAATAATGATGCTTTCAAAGGTCCTTATCAGTCGTAAGGGCAACATCTGTCCTAAGAGGATATTAACTTACGAGAGCCAAACTTACACTTATGACAGCCTACATAGCACTGTTGCCAAGCTCAAGGGGCTAAATGTTTGAATTGTATTTGTTTCATGGGTCATAGCATGTCCATTGTCATAAGTGATAAGTCAATTGATATAACCTCTCACGAGTGGTTATAACAGGCACCATTGATTTTACAACGGCTTCAAAAAAAAGTTACACAATTTAAAACTGTTACATGCACTGTTGACTGATTGTGTTGAACTATTCAGAGGGtttactgtttggccataacatTTTTTGGGAAACATTATTTTAAGTCTGCTTTTAGAGCAGTTTTCCAAGTACCGATTCAGATACATTTTGAGTGCAGCGAAAAGCCTTTTGACTCTGCATTTCTTTAGTAGGTTCATAAATGTTTCCCGTAACCAATATCAACATGAAGATAACTTCAAATGTGCTTTCTGACATATTGTTTAACACCTAAATCCAGACATTTGGAAACAGGTATCAAACGGATTGTTGCCACTGTAATTTCACTTAACAAAAAGCTCCACCCTCCAACTAACTGGAATGACTTTATGCATACGATTACTATGCatttatagatacagtatatacagaattTGACGCGTTATCATTTCTGTCGATGGAGTGCATACTACGACCCCTTTTGATTTAGGAAGTTGTCCCTCAAAACTAGATCCTTTTCACTTTGAGGAAAGATCGATGGAATGGTTCTCCCATAGGTATAACCAGCCATATAGGTGTATGTAACTGTATAGTATACGTATATGTATGTATTTGGCTCTGGGTATAACATTATCAATGAATACATTGAAAGTGTTTCCTATTAAAAGAGTTATCAGAGTATATGCTACAGGTACTGAGTTGTGTTTATATTTAAACCTCTAAGTCCTTACAAAGCTAGTTGAATACACATTATGTTCTCTTCTTAACAACTACAGCCAAAATCGCTGATGCATTTGAAAGATATAAGCTTGTTGGGGACTCATGATGCAGTTTTTATACAGTGTTAGTCCTTTTGTTAGGTGTGTGCATTTACAGAAGTCAAACCAACTTAAAATGAACAGAAATGGGGTCTATAGTTTACATGACCATGTATGTGTTCAATTACCCCCATTTCTTTTGTGTCAACAGACTATTCACTACCCGTGGCCTTTGCTCTACAATGCTAAACAAACCtatattaatatatatttcaAACTAAAACTTGTTTGCTTTCAATAAGAAACATTTATTGTATATTCTTATTTAAACAAAAAGGTGTGCCTTGCAGGGTTGTTTGTATATAAAAGTGTAATAAACTTTGATTGTTAACTTTTACAGGGTTTTATTGGT

Function

NR:

description
alpha-1-syntrophin-like

GO: NA

KEGG:

id description
K24063 SNTA; alpha-syntrophin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021568493.2 False 3218 mRNA 0.47 8 42029990 42108742
XM_021568494.2 True 3196 mRNA 0.47 8 42029991 42108741

Neighbor

gene id symbol gene type direction distance location
LOC110493901 LOC106565279 coding upstream 142309 41822362 ~ 41887681 (+)
LOC110493897 LOC106565282 coding upstream 323810 41641874 ~ 41706180 (+)
LOC110493894 LOC106565283 coding upstream 482276 41530173 ~ 41547714 (+)
LOC110493893 cdh22 coding upstream 945171 40767465 ~ 41084819 (+)
LOC110493184 LOC106565288 coding upstream 1555301 40448527 ~ 40474689 (+)
LOC110493907 LOC106565273 coding downstream 220823 42329565 ~ 42407845 (+)
LOC110493908 LOC106565271 coding downstream 326586 42435328 ~ 42516956 (+)
LOC110493909 arfrp coding downstream 420007 42528749 ~ 42532546 (+)
LOC110493911 LOC106565269 coding downstream 490978 42599720 ~ 42632365 (+)
LOC110493912 LOC106565266 coding downstream 631636 42740378 ~ 42762109 (+)
G1450872 NA non-coding upstream 1901 42027717 ~ 42028089 (+)
G1450858 NA non-coding upstream 11755 42018016 ~ 42018235 (+)
G1450857 NA non-coding upstream 12541 42017212 ~ 42017449 (+)
G1450490 LOC106565304 non-coding upstream 81001 41947490 ~ 41948989 (+)
G1450489 NA non-coding upstream 83043 41946694 ~ 41946947 (+)
G1450997 NA non-coding downstream 3982 42112724 ~ 42112950 (+)
G1451028 NA non-coding downstream 28715 42137457 ~ 42138842 (+)
G1451191 NA non-coding downstream 257584 42366326 ~ 42366548 (+)
G1451192 NA non-coding downstream 258380 42367122 ~ 42367442 (+)
G1451193 NA non-coding downstream 258732 42367474 ~ 42367719 (+)
G1450387 NA other upstream 139475 41792883 ~ 41890515 (+)
G1447998 NA other upstream 2229754 39799936 ~ 39800236 (+)
pmepa1 pmepa1 other upstream 2603090 39342991 ~ 39426900 (+)
G1451948 LOC570405 other downstream 1219844 43328586 ~ 43459832 (+)
G1451956 LOC106958509 other downstream 1220357 43329099 ~ 43409816 (+)
G1452359 NA other downstream 1373518 43482260 ~ 43483693 (+)
G1452362 NA other downstream 1382432 43491174 ~ 43492068 (+)
G1452369 NA other downstream 1432922 43508719 ~ 43565770 (+)

Expression


Co-expression Network