LOC110493909 (arfrp)


Basic Information

Item Value
gene id LOC110493909
gene name arfrp
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 42528749 ~ 42532546 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036949903.1
GGCGGTAATGGATCATTaacattggatgccaaccgccgttaaacccCATCGAAGAAGAAGTACCACAGTGCATTGCTTTATCAGCTACTTCCTAAATACTGATGGCCACCGTGTTTACACCCAAATTAGTTGAGATAAAATAATATCCATCTGTCAAGGTAGCTAGATGACATTTTGTCGACATAGCTCATCCTTTTAGCTTGATTTCCTTATGCAGTTTGTAAGTTGCTGAAGGTTGTCCGCTCGCAAATCTCGTTTTACACGCAGTAGCACTAACTTGAGCTAGACAGTTAACTAACGTTGGCTAGCATTAGCAAGCTACTGCACTGTAGCTAGCCAGGTATTTGTGCCTTGATTGGCGCATTATATTTCACTTTAGTATTTGGTGGCAGTAAGTCAGCTAGCTAGTATCGATTACGGACAGGTAATGTTAGCTTGCTTGCCTCAAACCACAGGCAAATAGCTAGTCATAACAACAGCTAGCTAACTTGACTTGCTAACGTGGCTAGCCATACAGCTGAATATTTCCACAATATGTACACCTTATTATCTGGTCTGTACAAATACGTGTTCCAGAAGGACGAATACTGCATCTTGATCCTAGGACTTGACAATGCAGGAAAAACCACATTTTTGGAACAGACCAAGACCAAGTTCAGTAAGAACTACAAGGGAATGAATTTGTCCAAGATCACCACTACAGTTGGACTTAACATCGGCACAATCGATGTGGGCAAAGCTCGTCTAATGTTCTGGGACCTTGGTGGTCAAGATGAGCTTCAGTCGCTATGGGACAAATACTACGCCGAGTCCCACGGTGTGATCTATGTTATAGACTCCACCGATGAGGAGCGACTAGCAGAATCAAAAGAGGCATTTGAGAAAATGATCAGCAGTGAGGTGTTGGAAGGTGTGCCTCTCCTGGTGCTCGCCAACAAGCAGGATGTGGAGAACTGTATGTCTGTGCCGGACATCAAAACCGCTTTTAGCGACTGCGCTCCAAAGATCGGTAAACGAGATTGCCTGGTGCAGCCTTGCACAGCCCTAACAGGGCAGGGGGTTAACGAAGGCATCGAGTGGATGGTGAAGTGCGTCATCAGAAACATTCACCGGCCACCGAGACTGAAGGACATCACATAGAGCAAGCCATGGCTTCCCCACTAGGGCTCCCGAAACCGGGTcctattcattaggcaccaaatggtaGAAAACGTACTGAAACAAGAAGGGACTACTTAGACTGCCAGTCCAATAAAAATCATTTTCAGTTGAAATATGCTTTAAAAGATTTTTCTACGTTCTGCCCTGTTGAATATGACCCAGGCGCCCGTTTTGCTACAGTGTGACTTTCAGAAACCGAGATGGATTCTATCCATGCCCTGGCAatgaacttctctctctctcatcctattTGAGTGGGTGCTGTGAACTCAAGTCTATTTTTCAGATACAGCTTAGCATCAGGGGTAAACAATTGGGAAACTATTGATTATTGTATGTTATTTGGATATGTACTCTGATTTGGGTGAAATGTTTTTTGAGGCATTCTGATCTAAGCATAAGTGTCAAGTCGATCAAGTCTTTATCTGGCTCAAGTACCTCCGTTTCCCTTCGGTAGTATAATccatattcataaagcgtctcagagtagggtGCTGATCTAGTATCAACTTTTCATTTTAGATCATATGAATCAAATTGATTATTTTACTTTTCATCCCAATGCTTATTTTTTAAGTACGAGGATGAACCTTGGCACAACCTTGAGTTGTTATTTATATTATGCAAAGATGCTACATGTAATGGAATTGTACAGAGGGTCAATGATATATAAATGACTTCCCTTTCATTGACAGGAGCTGTTTAAATACTAGTTTTATAGtttgaaattgtgtgtgtgtttggtgtatgTGTACAGTCgagtcccaaatggaacactattccctatttagggAATAGGTGTCCCCCCAGCGGCATCCTCTCTCTTTTTACTCTGTCTAACCTGGTGACGTATGCAAAGTATCTCCAATGATCAGGCTGAAAGCCTATTTGAATGACATTATGAAGATGTAATAAACAGTTGACACTTTT
>XM_021568505.2
GCGGTAATGGATCATTaacattggatgccaaccgccgttaaacccCATCGAAGAAGAAGTACCACAGTGCATTGCTTTATCAGCTACTTCCTAAATACTGATGGCCACCGTGTTTACACCCAAATTAGTTGAGATAAAATAATATCCATCTGTCAAGGTAGCTAGATGACATTTTGTCGACATAGCTCATCCTTTTAGCTTGATTTCCTTATGCAGTTTGTAAGTTGCTGAAGGTTGTCCGCTCGCAAATCTCGTTTTACACGCAGTAGCACTAACTTGAGCTAGACAGTTAACTAACGTTGGCTAGCATTAGCAAGCTACTGCACTGTAGCTAGCCAGGTATTTGTGCCTTGATTGGCGCATTATATTTCACTTTAGTATTTGGTGGCAGTAAGTCAGCTAGCTAGTATCGATTACGGACAGGTAATGTTAGCTTGCTTGCCTCAAACCACAGGCAAATAGCTAGTCATAACAACAGCTAGCTAACTTGACTTGCTAACGTGGCTAGCCATACAGCTGAATATTTCCACAATGTGAGTTGTCTATTGCCTTGCGCATCATCAGCAAGtgtttattttttgtatatatatatattttttttacaattcgaAGATGTACACCTTATTATCTGGTCTGTACAAATACGTGTTCCAGAAGGACGAATACTGCATCTTGATCCTAGGACTTGACAATGCAGGAAAAACCACATTTTTGGAACAGACCAAGACCAAGTTCAGTAAGAACTACAAGGGAATGAATTTGTCCAAGATCACCACTACAGTTGGACTTAACATCGGCACAATCGATGTGGGCAAAGCTCGTCTAATGTTCTGGGACCTTGGTGGTCAAGATGAGCTTCAGTCGCTATGGGACAAATACTACGCCGAGTCCCACGGTGTGATCTATGTTATAGACTCCACCGATGAGGAGCGACTAGCAGAATCAAAAGAGGCATTTGAGAAAATGATCAGCAGTGAGGTGTTGGAAGGTGTGCCTCTCCTGGTGCTCGCCAACAAGCAGGATGTGGAGAACTGTATGTCTGTGCCGGACATCAAAACCGCTTTTAGCGACTGCGCTCCAAAGATCGGTAAACGAGATTGCCTGGTGCAGCCTTGCACAGCCCTAACAGGGCAGGGGGTTAACGAAGGCATCGAGTGGATGGTGAAGTGCGTCATCAGAAACATTCACCGGCCACCGAGACTGAAGGACATCACATAGAGCAAGCCATGGCTTCCCCACTAGGGCTCCCGAAACCGGGTcctattcattaggcaccaaatggtaGAAAACGTACTGAAACAAGAAGGGACTACTTAGACTGCCAGTCCAATAAAAATCATTTTCAGTTGAAATATGCTTTAAAAGATTTTTCTACGTTCTGCCCTGTTGAATATGACCCAGGCGCCCGTTTTGCTACAGTGTGACTTTCAGAAACCGAGATGGATTCTATCCATGCCCTGGCAatgaacttctctctctctcatcctattTGAGTGGGTGCTGTGAACTCAAGTCTATTTTTCAGATACAGCTTAGCATCAGGGGTAAACAATTGGGAAACTATTGATTATTGTATGTTATTTGGATATGTACTCTGATTTGGGTGAAATGTTTTTTGAGGCATTCTGATCTAAGCATAAGTGTCAAGTCGATCAAGTCTTTATCTGGCTCAAGTACCTCCGTTTCCCTTCGGTAGTATAATccatattcataaagcgtctcagagtagggtGCTGATCTAGTATCAACTTTTCATTTTAGATCATATGAATCAAATTGATTATTTTACTTTTCATCCCAATGCTTATTTTTTAAGTACGAGGATGAACCTTGGCACAACCTTGAGTTGTTATTTATATTATGCAAAGATGCTACATGTAATGGAATTGTACAGAGGGTCAATGATATATAAATGACTTCCCTTTCATTGACAGGAGCTGTTTAAATACTAGTTTTATAGtttgaaattgtgtgtgtgtttggtgtatgTGTACAGTCgagtcccaaatggaacactattccctatttagggAATAGGTGTCCCCCCAGCGGCATCCTCTCTCTTTTTACTCTGTCTAACCTGGTGACGTATGCAAAGTATCTCCAATGATCAGGCTGAAAGCCTATTTGAATGACATTATGAAGATGTAATAAACAGTTGACACTTTT
>XM_021568506.2
GCGGTAATGGATCATTaacattggatgccaaccgccgttaaacccCATCGAAGAAGAAGTACCACAGTGCATTGCTTTATCAGCTACTTCCTAAATACTGATGGCCACCGTGTTTACACCCAAATTAGTTGAGATAAAATAATATCCATCTGTCAAGATGTACACCTTATTATCTGGTCTGTACAAATACGTGTTCCAGAAGGACGAATACTGCATCTTGATCCTAGGACTTGACAATGCAGGAAAAACCACATTTTTGGAACAGACCAAGACCAAGTTCAGTAAGAACTACAAGGGAATGAATTTGTCCAAGATCACCACTACAGTTGGACTTAACATCGGCACAATCGATGTGGGCAAAGCTCGTCTAATGTTCTGGGACCTTGGTGGTCAAGATGAGCTTCAGTCGCTATGGGACAAATACTACGCCGAGTCCCACGGTGTGATCTATGTTATAGACTCCACCGATGAGGAGCGACTAGCAGAATCAAAAGAGGCATTTGAGAAAATGATCAGCAGTGAGGTGTTGGAAGGTGTGCCTCTCCTGGTGCTCGCCAACAAGCAGGATGTGGAGAACTGTATGTCTGTGCCGGACATCAAAACCGCTTTTAGCGACTGCGCTCCAAAGATCGGTAAACGAGATTGCCTGGTGCAGCCTTGCACAGCCCTAACAGGGCAGGGGGTTAACGAAGGCATCGAGTGGATGGTGAAGTGCGTCATCAGAAACATTCACCGGCCACCGAGACTGAAGGACATCACATAGAGCAAGCCATGGCTTCCCCACTAGGGCTCCCGAAACCGGGTcctattcattaggcaccaaatggtaGAAAACGTACTGAAACAAGAAGGGACTACTTAGACTGCCAGTCCAATAAAAATCATTTTCAGTTGAAATATGCTTTAAAAGATTTTTCTACGTTCTGCCCTGTTGAATATGACCCAGGCGCCCGTTTTGCTACAGTGTGACTTTCAGAAACCGAGATGGATTCTATCCATGCCCTGGCAatgaacttctctctctctcatcctattTGAGTGGGTGCTGTGAACTCAAGTCTATTTTTCAGATACAGCTTAGCATCAGGGGTAAACAATTGGGAAACTATTGATTATTGTATGTTATTTGGATATGTACTCTGATTTGGGTGAAATGTTTTTTGAGGCATTCTGATCTAAGCATAAGTGTCAAGTCGATCAAGTCTTTATCTGGCTCAAGTACCTCCGTTTCCCTTCGGTAGTATAATccatattcataaagcgtctcagagtagggtGCTGATCTAGTATCAACTTTTCATTTTAGATCATATGAATCAAATTGATTATTTTACTTTTCATCCCAATGCTTATTTTTTAAGTACGAGGATGAACCTTGGCACAACCTTGAGTTGTTATTTATATTATGCAAAGATGCTACATGTAATGGAATTGTACAGAGGGTCAATGATATATAAATGACTTCCCTTTCATTGACAGGAGCTGTTTAAATACTAGTTTTATAGtttgaaattgtgtgtgtgtttggtgtatgTGTACAGTCgagtcccaaatggaacactattccctatttagggAATAGGTGTCCCCCCAGCGGCATCCTCTCTCTTTTTACTCTGTCTAACCTGGTGACGTATGCAAAGTATCTCCAATGATCAGGCTGAAAGCCTATTTGAATGACATTATGAAGATGTAATAAACAGTTGACACTTTT
>XM_021568507.2
GTAATGGATCATTaacattggatgccaaccgccgttaaacccCATCGAAGAAGAAGTACCACAGTGCATTGCTTTATCAGCTACTTCCTAAATACTGATGGCCACCGTGTTTACACCCAAATTAGTTGAGATAAAATAATATCCATCTGTCAAGGTAGCTAGATGACATTTTGTCGACATAGCTCATCCTTTTAGCTTGATTTCCTTATGCAGTTTGTAAGTTGCTGAAGGTTGTCCGCTCGCAAATCTCGTTTTACACGCAGTAGCACTAACTTGAGCTAGACAGTTAACTAACGTTGGCTAGCATTAGCAAGCTACTGCACTGTAGCTAGCCAGGTATTTGTGCCTTGATTGGCGCATTATATTTCACTTTAGTATTTGGTGGCAGTAAGTCAGCTAGCTAGTATCGATTACGGACAGGTAATGTTAGCTTGCTTGCCTCAAACCACAGGCAAATAGCTAGTCATAACAACAGCTAGCTAACTTGACTTGCTAACGTGGCTAGCCATACAGCTGAATATTTCCACAATAAGGACGAATACTGCATCTTGATCCTAGGACTTGACAATGCAGGAAAAACCACATTTTTGGAACAGACCAAGACCAAGTTCAGTAAGAACTACAAGGGAATGAATTTGTCCAAGATCACCACTACAGTTGGACTTAACATCGGCACAATCGATGTGGGCAAAGCTCGTCTAATGTTCTGGGACCTTGGTGGTCAAGATGAGCTTCAGTCGCTATGGGACAAATACTACGCCGAGTCCCACGGTGTGATCTATGTTATAGACTCCACCGATGAGGAGCGACTAGCAGAATCAAAAGAGGCATTTGAGAAAATGATCAGCAGTGAGGTGTTGGAAGGTGTGCCTCTCCTGGTGCTCGCCAACAAGCAGGATGTGGAGAACTGTATGTCTGTGCCGGACATCAAAACCGCTTTTAGCGACTGCGCTCCAAAGATCGGTAAACGAGATTGCCTGGTGCAGCCTTGCACAGCCCTAACAGGGCAGGGGGTTAACGAAGGCATCGAGTGGATGGTGAAGTGCGTCATCAGAAACATTCACCGGCCACCGAGACTGAAGGACATCACATAGAGCAAGCCATGGCTTCCCCACTAGGGCTCCCGAAACCGGGTcctattcattaggcaccaaatggtaGAAAACGTACTGAAACAAGAAGGGACTACTTAGACTGCCAGTCCAATAAAAATCATTTTCAGTTGAAATATGCTTTAAAAGATTTTTCTACGTTCTGCCCTGTTGAATATGACCCAGGCGCCCGTTTTGCTACAGTGTGACTTTCAGAAACCGAGATGGATTCTATCCATGCCCTGGCAatgaacttctctctctctcatcctattTGAGTGGGTGCTGTGAACTCAAGTCTATTTTTCAGATACAGCTTAGCATCAGGGGTAAACAATTGGGAAACTATTGATTATTGTATGTTATTTGGATATGTACTCTGATTTGGGTGAAATGTTTTTTGAGGCATTCTGATCTAAGCATAAGTGTCAAGTCGATCAAGTCTTTATCTGGCTCAAGTACCTCCGTTTCCCTTCGGTAGTATAATccatattcataaagcgtctcagagtagggtGCTGATCTAGTATCAACTTTTCATTTTAGATCATATGAATCAAATTGATTATTTTACTTTTCATCCCAATGCTTATTTTTTAAGTACGAGGATGAACCTTGGCACAACCTTGAGTTGTTATTTATATTATGCAAAGATGCTACATGTAATGGAATTGTACAGAGGGTCAATGATATATAAATGACTTCCCTTTCATTGACAGGAGCTGTTTAAATACTAGTTTTATAGtttgaaattgtgtgtgtgtttggtgtatgTGTACAGTCgagtcccaaatggaacactattccctatttagggAATAGGTGTCCCCCCAGCGGCATCCTCTCTCTTTTTACTCTGTCTAACCTGGTGACGTATGCAAAGTATCTCCAATGATCAGGCTGAAAGCCTATTTGAATGACATTATGAAGATGTAATAAACAGTTGACACTTTT

Function

NR:

description
ADP-ribosylation factor-related protein 1-like isoform X1

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07952 ARFRP1; ADP-ribosylation factor related protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036949903.1 False 2091 mRNA 0.42 8 42528749 42532546
XM_021568505.2 False 2169 mRNA 0.42 7 42528750 42532546
XM_021568506.2 False 1714 mRNA 0.42 8 42528750 42532546
XM_021568507.2 True 2045 mRNA 0.42 8 42528753 42532546

Neighbor

gene id symbol gene type direction distance location
LOC110493908 LOC106565271 coding upstream 11793 42435328 ~ 42516956 (+)
LOC110493907 LOC106565273 coding upstream 120904 42329565 ~ 42407845 (+)
LOC110493904 LOC106565276 coding upstream 420007 42029990 ~ 42108742 (+)
LOC110493901 LOC106565279 coding upstream 641068 41822362 ~ 41887681 (+)
LOC110493897 LOC106565282 coding upstream 822569 41641874 ~ 41706180 (+)
LOC110493911 LOC106565269 coding downstream 67174 42599720 ~ 42632365 (+)
LOC110493912 LOC106565266 coding downstream 207832 42740378 ~ 42762109 (+)
LOC110493915 LOC106565264 coding downstream 237759 42770305 ~ 42776295 (+)
LOC110493924 LOC106591969 coding downstream 417982 42950528 ~ 42952198 (+)
LOC110493836 LOC106565017 coding downstream 727620 43260166 ~ 43270260 (+)
G1451210 NA non-coding upstream 102884 42425633 ~ 42425865 (+)
G1451201 NA non-coding upstream 113494 42414928 ~ 42415255 (+)
G1451200 NA non-coding upstream 114463 42414076 ~ 42414286 (+)
G1451179 NA non-coding upstream 117416 42410730 ~ 42411333 (+)
G1451534 NA non-coding downstream 9543 42542089 ~ 42542319 (+)
G1451551 LOC106565270 non-coding downstream 31399 42563945 ~ 42588386 (+)
G1451562 NA non-coding downstream 59170 42591716 ~ 42591935 (+)
G1451549 NA non-coding downstream 100122 42632668 ~ 42636308 (+)
G1451578 NA non-coding downstream 104677 42637223 ~ 42697720 (+)
G1450387 NA other upstream 638234 41792883 ~ 41890515 (+)
LOC110493893 cdh22 other upstream 1560683 40767465 ~ 41084819 (+)
G1447998 NA other upstream 2728513 39799936 ~ 39800236 (+)
pmepa1 pmepa1 other upstream 3101849 39342991 ~ 39426900 (+)
G1451948 LOC570405 other downstream 796040 43328586 ~ 43459832 (+)
G1451956 LOC106958509 other downstream 796553 43329099 ~ 43409816 (+)
G1452359 NA other downstream 949714 43482260 ~ 43483693 (+)
G1452362 NA other downstream 958628 43491174 ~ 43492068 (+)
G1452369 NA other downstream 1009118 43508719 ~ 43565770 (+)

Expression


Co-expression Network