LOC110493924 (LOC106591969)


Basic Information

Item Value
gene id LOC110493924
gene name LOC106591969
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 42950528 ~ 42952198 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021568523.2
CTTGTTTCTCACTTCAGTCTTTCATCACACTTATCTTCACAGATGGTGTTAAAGCACTCCGTACCAGGGATCGTGGTCCAACGCCACTGCTCCTGTGTTGCAGAAAGTGCTGTGTGCAATCATCTGGTGGCCCTTCTTTACCAGACAGCGCACTACTCTCAACTAAACATTCCTGCTGCACCACCAGTTCACAGCTGCACAGACACAGAACAGCGTTGGCACGAGCCATGAACACTTGGTGTGAAGCCAGGTCCGGTTGATGGGATAGTTCCGTAAACCTACTAACTCGTGTGCTGATGGAATAAGAAGTTCTCTCTACAAAGCACTCCATGGATATATGCCTGACATGGACCTTCTCCGCGTCTCAGAAACGTATGCCAACTTTTCTCCACTTACTGCCCCTCTGgtgacaacaatggaaatgtcagCTGATGTGCCCCTGGTTGAGTCCGCCTTTGGGCCAGTGCAAGCTGGCAGTGTGCTGTCCTATCAACTTCCACAGCCAAAGACccgtgaaattgtgaaaattgcCGATGCCCCTTCTCCACTAATACTTCCGTTAGATGGCAACAGGCTTCAGTCTTCCCAGTGTGCTTACGTCCTTAGCCATCAGGGGCAGTTCCAGGTCAAGGCATTAGAGACAACCTACGAGAAGTCACACAAAGTCGAGTTTGCTACAAGGGAGCAGAGCAGCAGCCCGGAATGGCATCAGCTCAGGAAAATGAGAATAACATCGTCTCGTTTCCGAGAGATTTGCCATGTCCGGGGAGAGACCTCAGCGGACCGCCTAGCTGAGCGGATGTTCAAGGGATCTGGTGTGCAGACCGTGGAGATGAAGAGGGGGCTAGCCATGGAGCCAGTGGCAGTACAGGAGTACTGCACACTGAAGAATGTTAACTTCTTTCCATGTGGCTTCGTAGTGCACCCAGATGCTCCGTGGTTAGGATCCTCTCCAGATGGCATCATATTTGATCCCAGTGTGAGACCACACTTTGGACTCTTAGAGGTCAAGTGCCCAAATGTACCAAGTTAGGTTGACTGCCTTTACCTGAGGATACAGAATGGAGAGCTGAAGTTAAAGAGATTTCATGCTTACTACTGGCAGGTGCAAGGTCAAATTCTTCTCACAGGTTGTAGCTGGTGTGACTTTGTCATCTGTGCACAGGAGGACATCCTAGTTGAAAGGATATCTAAAGATCTACAGGTTTCAAAAACTATAAGAGAGAAGgttgaacacttttatttttacCACTACTTGCAGAAGTGTCTCTCGcacctgaatggatcccctgcatGGGTGCAAAGTTTAGTGGTTTCATGAAAAATAACTATTGATGTTCTTGTGAAGAAAACTGCAGTAGAATATATTTGtttaaaataatgtatttcaGCAAATGTTCATCAGTTCAGTTAATCAATTACACATCT

Function

NR:

description
uncharacterized protein LOC110493924 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021568523.2 True 1428 mRNA 0.47 3 42950528 42952198

Neighbor

gene id symbol gene type direction distance location
LOC110493915 LOC106565264 coding upstream 174233 42770305 ~ 42776295 (+)
LOC110493912 LOC106565266 coding upstream 188419 42740378 ~ 42762109 (+)
LOC110493911 LOC106565269 coding upstream 318163 42599720 ~ 42632365 (+)
LOC110493909 arfrp coding upstream 417982 42528749 ~ 42532546 (+)
LOC110493908 LOC106565271 coding upstream 433572 42435328 ~ 42516956 (+)
LOC110493836 LOC106565017 coding downstream 307968 43260166 ~ 43270260 (+)
LOC118940459 NA coding downstream 367599 43319797 ~ 43330019 (+)
LOC118940518 NA coding downstream 371330 43323528 ~ 43323647 (+)
LOC110493832 LOC107715185 coding downstream 378231 43330429 ~ 43330803 (+)
LOC118940144 LOC106024139 coding downstream 380117 43332315 ~ 43341386 (+)
G1451880 NA non-coding upstream 61694 42883680 ~ 42888834 (+)
G1451832 NA non-coding upstream 83767 42838673 ~ 42866761 (+)
G1451851 NA non-coding upstream 119132 42831196 ~ 42831396 (+)
G1451842 NA non-coding upstream 127415 42822872 ~ 42823113 (+)
G1451838 NA non-coding upstream 133783 42816545 ~ 42816745 (+)
G1451971 NA non-coding downstream 37439 42989637 ~ 42989896 (+)
G1452000 NA non-coding downstream 72946 43025144 ~ 43025387 (+)
G1452006 NA non-coding downstream 87454 43039652 ~ 43040023 (+)
G1452007 NA non-coding downstream 89848 43042046 ~ 43042283 (+)
G1452010 NA non-coding downstream 95070 43047268 ~ 43047948 (+)
G1450387 NA other upstream 1060013 41792883 ~ 41890515 (+)
LOC110493897 LOC106565282 other upstream 1256810 41641874 ~ 41706180 (+)
LOC110493893 cdh22 other upstream 1982462 40767465 ~ 41084819 (+)
G1447998 NA other upstream 3150292 39799936 ~ 39800236 (+)
pmepa1 pmepa1 other upstream 3523628 39342991 ~ 39426900 (+)
G1451948 LOC570405 other downstream 376388 43328586 ~ 43459832 (+)
G1451956 LOC106958509 other downstream 376901 43329099 ~ 43409816 (+)
G1452359 NA other downstream 530062 43482260 ~ 43483693 (+)
G1452362 NA other downstream 538976 43491174 ~ 43492068 (+)
G1452369 NA other downstream 589466 43508719 ~ 43565770 (+)

Expression


Co-expression Network