XLOC_033282 (fbxl3b)


Basic Information

Item Value
gene id XLOC_033282
gene name fbxl3b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 59935950 ~ 59942335 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00064586
acgtgtgaactttggttccgaccacagttCAGCACTGAGTCTGCAGAGGCAGCGTGTGATATCCTCTCTCAGCTGGTCAACTGCTCTCTGAAGACTCTGGGACTCATCTCCACCGCTCGACCCTCCTTCATGGAGCTGCCCAaaTCTCACTTCATCTCTGCGCTGACCGTGGTGTTCGTCAACTCCAAATCCCTGTCCTCGCTGAAGATCGACGACACGCCGGTGGACGACCCCTCGCTGAAGGTGCTGGTGGCCAACAACAGCGACACGCTGAAGCTGCTGAAGATGAGCAGCTGTCCACACGTGTCTCCCGCAGgtatcCTGTGTGTGGCGGATCAGTGTCACGGTCTGCGTGAGTTAGCGCTGAACTATCACCTGCTGAGCGATGATCTTCTGCTAGCGCTGTCGTCGGAGCGTCACGTTCACCTGGAGCACCTGCGCATCGACGTGGTGAGCGAGAACCCGGGCCAGCACTTCCACTCCATCAAGAAGAGCAGCTGGGACGCCATGGTGCGCCACTCGCCCAAGTTCAGCCTGGTGATGTACTTCTTCCTGTACGAGGACGAGTTCGGGCCCTTCTTCCAGCACGAGGTGCCGGTGACGCACCTGTACTTCGGCCGCTCCGTCAGTAAGGAGGTGCTGGGGCGCGTGGGGCTGACGTGCCCGCGGCTGGTGGAGCTGGTGGTGTGCGCTAACGGGCTGCGGCCGCTGGACGAGGAGCTGATCCGGATGGCGGAGCGCTGCCGTCAGCTGTCGGCCGTGGGGCTGGGCGAGTGCGAGGTGTCCTGCAGCGCCTTCGTGGAGTTCGTGAAGATGTGCGGCCGTCGCCTCTCGCAGCTCTCCATCATGGAGGAGGTGCTGGTGCCCGACAGCAGGTACGGCCTGGACGACATACACTGGGAGGTGTCCAAACACCTGGGCCGGGTCTGGTTCCCTGACATGATGCCCACCTGGTAG

Function

symbol description
fbxl3b Predicted to be involved in several processes, including G2/M transition of mitotic cell cycle; SCF-dependent proteasomal ubiquitin-dependent protein catabolic process; and entrainment of circadian clock by photoperiod. Predicted to be part of SCF ubiquitin ligase complex. Predicted to be active in cytosol and nucleus. Orthologous to human FBXL3 (F-box and leucine rich repeat protein 3).

GO:

id name namespace
GO:0051726 regulation of cell cycle biological_process
GO:0000086 G2/M transition of mitotic cell cycle biological_process
GO:0043153 entrainment of circadian clock by photoperiod biological_process
GO:0031146 SCF-dependent proteasomal ubiquitin-dependent protein catabolic process biological_process
GO:0019005 SCF ubiquitin ligase complex cellular_component
GO:0005829 cytosol cellular_component
GO:0005634 nucleus cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-041010-178 Predicted to be involved in several processes, including G2/M transition of mitotic cell cycle; SCF-dependent proteasomal ubiquitin-dependent protein catabolic process; and entrainment of circadian clock by photoperiod. Predicted to be part of SCF ubiquitin ligase complex. Predicted to be active in cytosol and nucleus. Orthologous to human FBXL3 (F-box and leucine rich repeat protein 3).

Ensembl:

ensembl_id ENSDARG00000021882

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00064586 True 957 mRNA 0.62 4 59935950 59942335

Neighbor

gene id symbol gene type direction distance location
XLOC_033281 NA coding downstream 82267 59835630 ~ 59853683 (-)
XLOC_033280 CABZ01117510.1 coding downstream 250689 59685145 ~ 59685261 (-)
XLOC_033279 CABZ01117503.1 coding downstream 372353 59557501 ~ 59563597 (-)
XLOC_033278 gli1 coding downstream 430361 59426148 ~ 59505589 (-)
XLOC_033277 NA coding downstream 514480 59395847 ~ 59421470 (-)
XLOC_033283 NA coding upstream 31367 59973702 ~ 59974747 (-)
XLOC_033284 wbp4 coding upstream 75898 60018233 ~ 60020385 (-)
XLOC_033285 slain1b coding upstream 81782 60024117 ~ 60031693 (-)
XLOC_033286 ccndbp1 coding upstream 100718 60043053 ~ 60049272 (-)
XLOC_033287 pmepa1 coding upstream 134121 60076456 ~ 60104628 (-)
XLOC_033273 NA non-coding downstream 764411 59168060 ~ 59171539 (-)
XLOC_033272 CABZ01111575.1 non-coding downstream 799163 59136671 ~ 59136787 (-)
XLOC_033289 NA non-coding upstream 325472 60267807 ~ 60269211 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000340_19362971_19364787 FBXL3, FBXL3A coding CI01000340 null 19362971 ~ 19365649 (+)
bowfin (Amia calva) AMCG00014576 fbxl3,fbxl3a,LOC107703114 coding CM030128.1 CM030128.1 18485261 ~ 18487280 (-)