XLOC_033283


Basic Information

Item Value
gene id XLOC_033283
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 59973702 ~ 59974747 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00065272
cacacacacacacagctgaggaGAGAGAtcgagATCCAGAGGCGCCGGTGTGAAGCCATCCAGAAGCGTCTGCGCTGTCAGCTGAAGAAGACTCAGTCCAGCCAGCGGCGTCTGCGCAGCGACGTCACACACATGGAGAAGCAGCTGGAGGATCTGCGGCGTCTGGAGGAGCGATAAACACACTACAGCCTTACCTTACCTCTGATCTAATGCACACCAGCAGGTAAAACACGAGCACACCACAGCCTTACCCACATTTAAAGCATGCGCATTACGGTTAGACAGATCAGCGTTCAGATTCAGTGTTCAgtcagagtgtgtgtttggagGATCTGTTCAATAAATGAGCACACTCACAAACAGACGCTGCTCCGTTTCACACTTTCCTACTCAGAGTTTGTCTCGTTTCCAGTCTAAATatcttcattcactcattttccttcagctgagtccctttatccatcaggggtcgccacagcggaatgaaccgccaactattccagcatatgtttaacacagcggatgcctttcaagctgcaacccagtactgggaaacatccatacacactcatacactacggccagtgtagttgatcagttcccctatagcgcatgtgttcggactgtgggggaaaccggagc
>TCONS_00065273
cacacacacacacagctgaggaGAGAGAtcgagATCCAGAGGCGCCGGTGTGAAGCCATCCAGAAGCGTCTGCGCTGTCAGCTGAAGAAGACTCAGTCCAGCCAGCGGCGTCTGCGCAGCGACGTCACACACATGGAGAAGCAGCTGGAGGATCTGCGGCGTCTGGAGGAGCGATAAACACACTACAGCCTTACCTTACCTCTGATCTAATGCACACCAGCAGGTAAAACACGAGCACACCACAGCCTTACCCACATTTAAAGCATGCGCATTACGGTTAGACAGATCAGCGTTCAGATTCAGTGTTCAgtcagagtgtgtgtttggagGATCTGTTCAATAAATGAGCACACTCACAAACAGACGCTGCTCCGTTTCACACTTTCCTACTCAGAGTTTGTCTCGTTTCCAGTCTAAATatcttcattcactcattttccttcagctgagtccctttatccatcaggggtcgccacagcggaatgaaccgccaactattccagcatatgtttaacacagcggatgcctttcaagctgcaacccagtactgggaaacatccatacacactcatacactacggccagtgtagttgatcagttcccctatagcgcatgtgttcggactgtgggggaaaccggagc

Function

GO:

id name namespace
GO:0006086 acetyl-CoA biosynthetic process from pyruvate biological_process
GO:0006091 generation of precursor metabolites and energy biological_process
GO:0042773 ATP synthesis coupled electron transport biological_process
GO:0042775 mitochondrial ATP synthesis coupled electron transport biological_process
GO:0006119 oxidative phosphorylation biological_process
GO:0022900 electron transport chain biological_process
GO:0022904 respiratory electron transport chain biological_process
GO:0009150 purine ribonucleotide metabolic process biological_process
GO:0015980 energy derivation by oxidation of organic compounds biological_process
GO:0045333 cellular respiration biological_process
GO:1990204 oxidoreductase complex cellular_component
GO:0045254 pyruvate dehydrogenase complex cellular_component
GO:0005967 mitochondrial pyruvate dehydrogenase complex cellular_component
GO:0004738 pyruvate dehydrogenase activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00065272 False 642 lncRNA 0.51 2 59973702 59974697
TCONS_00065273 True 642 lncRNA 0.51 2 59973702 59974747

Neighbor

gene id symbol gene type direction distance location
XLOC_033282 fbxl3b coding downstream 31367 59935950 ~ 59942335 (-)
XLOC_033281 NA coding downstream 120019 59835630 ~ 59853683 (-)
XLOC_033280 CABZ01117510.1 coding downstream 288441 59685145 ~ 59685261 (-)
XLOC_033279 CABZ01117503.1 coding downstream 410105 59557501 ~ 59563597 (-)
XLOC_033278 gli1 coding downstream 468113 59426148 ~ 59505589 (-)
XLOC_033284 wbp4 coding upstream 43486 60018233 ~ 60020385 (-)
XLOC_033285 slain1b coding upstream 49370 60024117 ~ 60031693 (-)
XLOC_033286 ccndbp1 coding upstream 68306 60043053 ~ 60049272 (-)
XLOC_033287 pmepa1 coding upstream 101709 60076456 ~ 60104628 (-)
XLOC_033288 slc32a1 coding upstream 167872 60142619 ~ 60147517 (-)
XLOC_033277 NA non-coding downstream 552232 59395847 ~ 59421470 (-)
XLOC_033273 NA non-coding downstream 802163 59168060 ~ 59171539 (-)
XLOC_033272 CABZ01111575.1 non-coding downstream 836915 59136671 ~ 59136787 (-)
XLOC_033289 NA non-coding upstream 293060 60267807 ~ 60269211 (-)

Expression


Co-expression Network