XLOC_033284 (wbp4)


Basic Information

Item Value
gene id XLOC_033284
gene name wbp4
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 60018233 ~ 60020385 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00064589
GCTGATTACTGGAAGTCGCAGCCGAGGAAGTTCTGTCAGTACTGTAAAtgctGGTTCGTCATCAGTGTTTCTCCGCAGAGTGTCGAGTTCCACGAGAGAGGAAAGAACCATAAAGAGAATGTGGCCGCCAAAATACAAGAGATTAGGAAGAAGAGTGTGGCGAAGGCCAAGCAGGAGAAGAAGATGTCCAAAGACTTCGCAGCGATGGAGGATGCGGCTCAGAAGGCGTACGAGGAGGATCTGAAGAGACTCGCCGGACACACCtcaggtgagaGTGTGTGTTCTGCTAAAGCTCCAGCTGAAGCTCCAGTTAGGAAACAGAAGAAGCTGAAGCCCAGTGCGGTAAAGCCCCGCTCGGACCCCAGCAGCAGC
>TCONS_00064588
GCTGATTACTGGAAGTCGCAGCCGAGGAAGTTCTGTCAGTACTtgctGGTTCGTCATCAGTGTTTCTCCGCAGAGTGTCGAGTTCCACGAGAGAGGAAAGAACCATAAAGAGAATGTGGCCGCCAAAATACAAGAGATTAGGAAGAAGAGTGTGGCGAAGGCCAAGCAGGAGAAGAAGATGTCCAAAGACTTCGCAGCGATGGAGGATGCGGCTCAGAAGGCGTACGAGGAGGATCTGAAGAGACTCGCCGGACACACCtcaggtgagaGTGTGTGTTCTGCTAAAGCTCCAGCTGAAGCTCCAGTTAGGAAACAGAAGAAGCTGAAGCCCAGTGCGGTAAAGCCCCGCTCGGACCCCAGCAGCAGC
>TCONS_00064587
GCTGATTACTGGAAGTCGCAGCCGAGGAAGTTCTGTCAGTACTGTAAANCGGATAATAAACCCAGTGTCGAGTTCCACGAGAGAGGAAAGAACCATAAAGAGAATGTGGCCGCCAAAATACAAGAGATTAGGAAGAAGAGTGTGGCGAAGGCCAAGCAGGAGAAGAAGATGTCCAAAGACTTCGCAGCGATGGAGGATGCGGCTCAGAAGGCGTACGAGGAGGATCTGAAGAGACTCGCCGGACACACCtcaggtgagaGTGTGTGTTCTGCTAAAGCTCCAGCTGAAGCTCCAGTTAGGAAACAGAAGAAGCTGAAGCCCAGTGCGGTAAAGCCCCGCTCGGACCCCAGCAGCAGC

Function

symbol description
wbp4 Predicted to enable RNA binding activity. Predicted to be involved in RNA splicing. Predicted to act upstream of or within mRNA splicing, via spliceosome. Predicted to be located in nucleus. Predicted to be part of precatalytic spliceosome. Orthologous to human WBP4 (WW domain binding protein 4).

GO:

id name namespace
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0008380 RNA splicing biological_process
GO:0071011 precatalytic spliceosome cellular_component
GO:0005634 nucleus cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
ko03041 Spliceosome

ZFIN:

id description
ZDB-GENE-050522-342 Predicted to enable RNA binding activity. Predicted to be involved in RNA splicing. Predicted to act upstream of or within mRNA splicing, via spliceosome. Predicted to be located in nucleus. Predicted to be part of precatalytic spliceosome. Orthologous to human WBP4 (WW domain binding protein 4).

Ensembl:

ensembl_id ENSDARG00000068082

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00064589 False 372 mRNA 0.53 4 60018233 60020385
TCONS_00064588 False 367 mRNA 0.53 4 60018233 60020385
TCONS_00064587 True 357 mRNA 0.52 5 60018233 60020385

Neighbor

gene id symbol gene type direction distance location
XLOC_033283 NA coding downstream 43486 59973702 ~ 59974747 (-)
XLOC_033282 fbxl3b coding downstream 75898 59935950 ~ 59942335 (-)
XLOC_033281 NA coding downstream 164550 59835630 ~ 59853683 (-)
XLOC_033280 CABZ01117510.1 coding downstream 332972 59685145 ~ 59685261 (-)
XLOC_033279 CABZ01117503.1 coding downstream 454636 59557501 ~ 59563597 (-)
XLOC_033285 slain1b coding upstream 3732 60024117 ~ 60031693 (-)
XLOC_033286 ccndbp1 coding upstream 22668 60043053 ~ 60049272 (-)
XLOC_033287 pmepa1 coding upstream 56071 60076456 ~ 60104628 (-)
XLOC_033288 slc32a1 coding upstream 122234 60142619 ~ 60147517 (-)
XLOC_033289 NA coding upstream 247422 60267807 ~ 60269211 (-)
XLOC_033277 NA non-coding downstream 596763 59395847 ~ 59421470 (-)
XLOC_033273 NA non-coding downstream 846694 59168060 ~ 59171539 (-)

Expression


Co-expression Network