XLOC_033286 (ccndbp1)


Basic Information

Item Value
gene id XLOC_033286
gene name ccndbp1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 60043053 ~ 60049272 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00064591
CTCAGACAATATTAGTTCCGCTTGACTTTCGTTCCGCGGCTCCACGAGACTGAAGCAAAGCGCGTCATGAGCGCCGAAAACTCGCGTTCAGAAGCGCTGCTTCCGCTGAGAAACCTCTGGAACTCGGTGAAGTGCAGCAGGGATCGAGTGAGAGATGGAGAGTCCAACGACAGCAGCGGCACCTTCAGCTTGGCCAACTTCTGGGAGATTCTGAATGAAGCTGTAAAAGCAGTGTCTCAAGAAGCGACTAAACTCAGCCTGATGTTCTCCAAGCCGCCACTGCCGTCAGACGAGGATTGTGCAAAAATGGGGGAGTGTGTGCAGAAGAGTGTGTTGACCTTGTGCACCGTTTACTTCTGGCTGCCAAAGAGTCAAGGAGTCACACTGAGGAGGTCTGTCAGGGACGCCACCGCTGAGGTTCTGGAGGGTCTGGTTCAGCTGCTGGATGTCATTCTGTCCTCACCTGGACAAAGTCTCTCGCAGGAGCAGCTCACCTCCACCGGGAGTGTTTGGGCCGCATGTGACCATTTTGACCAGATACCCAAAGATAACCGCAGTGCTGTTCTGGCCGTCTTGAGCTCGTGTGTGGGTTTGGTGAAGGACGCTCTGGAGGAGATGCAGCAGGCTCTGGCTGAGTCACAGGACCCGTTTGGAGACGTcctggatgatgatgatgatgatgaaggtggTCGTGGGAATCAGGACAGGTATTGGTCAGCGTCAGACCGGcagctgattggtcagtgtgAGGGTCTGCTGAAGGCATCTGCAGCCAGTCTGCGCAAACTCTCGTCTGCGGTCAGACACAACGCTCAGCTGGAGACGGAGCAGGAGATCGCTCAGCTGGACGACCTGGCGGACGCTGCAGCACATGTCAGTCCCTGtgttgaTGACCTGGCCCTTAGCCTTTACCCGCCTGTGGACCGAGCTGCCGTGGAGCAGAACGTGTGCAGACTGGCAGCTGTGCTGAAAAAACTGCTGGACATCACCAGGTCCTCTCATGTCTGTGCGGAGGCCGATGTGTCCTGGGTGGAGTTTCTGAGTGGAGCTGTTGAACACAACCTGGAGAAGGTCAGATCACTGCTGAGGAGCGGCTCGTAGCGCACGGAgagacggtgtgtgtgtgtgtgtgtgtgtacaggtttagCTACTCTTGTGAGGACTTGTATGTTTTCATGTATATAGTGAAATATTAAAAGGATCCATTATTGAGGATATTTTACTGCTTGTAAAATTCTCAGCAGATGTTCATCAGTGTGTGCAGTTGTGTGTGTGAGGGTTGGGTTAGGGGTAGAGTTATGGTTAAGCCATAGACATCATTAACCTGAgagaaaaacaatggaagtctaATCTAATGTCCTCACTAAGAtgaaacaaacctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggtacttatttttatatcctgctggggacttaaacctgaatgcacaCAGATTCATGGGGACTTGTATCACAGGGAGGATCAATATTGAGGTCTTCATGGGTAAACAAGCTCATAAATCGGTCAGAATGAAGGATTGTAAAGATGTAAACGTGCAGAGTGTTTGCGTTGAGGGTTAAGTTTTAAGAATAAACAGTCCGCACAGTAGAAACATCACTACAGGTATGGAGAGTCCCCACTTGGATATcggaacaagtgtgtgtgtgcgtgcatgcatgtgtgcgtgAAGTATCCAGAGCTTTTACTGCAGAGGAGAATCAACAACAGCACAAACAAACTGAGCTTGATCTGCAGCCGTGGAGGAGTCTGAGCCTCAGAAATATTGACATGTGTTTTCATGCTTTTATTCACAATATCTTCTGTTTATCTTCTGCTCATTCTGTAATGTTCGTCATATTACAGATATTAATATTACATATGACTTGCTTCattaacagaacaaaacagacttttaattcaaatgtttatttattctgATTAAACGCATAATGCTAATGCTCCAACGAGTGCTTAAAATCCTTGAGAGTTGgagaattaaaaataaagattgaacacacaaaaacatgaaaacattacAAAACCCTAGAGTTGTTCTgaaaataaagacacacagataaaaacctgaaaagtgcttgaattaattttgtgcaagaagttttggtggaaaaaaaagatcccacattattttctatttattatacaGTTCATCTCCAGGTGAACATTCTGTTgtttctactatgaaagtcaatgatgagtttgttttgtgttcaacagaaaatctCTGATACTTtgtgaatgaaataaatatacaaactgcAAAGCCCTAGAAGTTTTCTGCAAATAAAGACACAAAGATAAAGATCA

Function

symbol description
ccndbp1 Predicted to act upstream of or within regulation of cell cycle. Located in cytoplasm. Is expressed in hepatocyte; intestine; kidney; liver; and testis. Orthologous to human CCNDBP1 (cyclin D1 binding protein 1).

GO:

id name namespace
GO:0051726 regulation of cell cycle biological_process
GO:0007049 cell cycle biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003674 molecular_function molecular_function

KEGG:

id description
ko03000 Transcription factors

ZFIN:

id description
ZDB-GENE-070410-17 Predicted to act upstream of or within regulation of cell cycle. Located in cytoplasm. Is expressed in hepatocyte; intestine; kidney; liver; and testis. Orthologous to human CCNDBP1 (cyclin D1 binding protein 1).

Ensembl:

ensembl_id ENSDARG00000039328

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00064591 True 2434 mRNA 0.46 11 60043053 60049272

Neighbor

gene id symbol gene type direction distance location
XLOC_033285 slain1b coding downstream 11360 60024117 ~ 60031693 (-)
XLOC_033284 wbp4 coding downstream 22668 60018233 ~ 60020385 (-)
XLOC_033283 NA coding downstream 68306 59973702 ~ 59974747 (-)
XLOC_033282 fbxl3b coding downstream 100718 59935950 ~ 59942335 (-)
XLOC_033281 NA coding downstream 189370 59835630 ~ 59853683 (-)
XLOC_033287 pmepa1 coding upstream 27184 60076456 ~ 60104628 (-)
XLOC_033288 slc32a1 coding upstream 93347 60142619 ~ 60147517 (-)
XLOC_033289 NA coding upstream 218535 60267807 ~ 60269211 (-)
XLOC_033280 CABZ01117510.1 non-coding downstream 357792 59685145 ~ 59685261 (-)
XLOC_033277 NA non-coding downstream 621583 59395847 ~ 59421470 (-)
XLOC_033273 NA non-coding downstream 871514 59168060 ~ 59171539 (-)

Expression


Co-expression Network