LOC118940458 (LOC106958509)


Basic Information

Item Value
gene id LOC118940458
gene name LOC106958509
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 43232723 ~ 43233126 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036949942.1
AATTCACTTGAACTCAGCTAGCGAACACACGATGTCTGGAAGAGGTAAAGGCGGCAAGGGACTCGGAAAAGGAGGCGCCAAGCGTCACCGTAAGGTTCTCCGCGATAACATCCAGGGAATCACCAAGCCCGCCATTCGCCGTCTGGCTCGCCGTGGCGGCGTGAAGCGTATCTCCGGGCTGATCTACGAGGAGACCCGCGGTGTCCTGAAGGTGTTCCTTGAGAACGTGATCCGTGACGCCGTCACCTACACCGAGCACGCCAAGAGGAAGACCGTTACGGCCATGGACGTGGTCTACGCTCTGAAACGCCAGGGACGCACCCTGTACGGTTTCGGCGGTTAAACGCACTCTTCTCGGAACGTCAACATCCCGACTtgaacccaaaggctcttttaagagccac
>TU1661747
CTTGAACTCAGCTAGCGAACACACGATGTCTGGAAGAGGTAAAGGCGGCAAGGGACTCGGAAAAGGAGGCGCCAAGCGTCACCGTAAGGTTCTCCGCGATAACATCCAGGGAATCACCAAGCCCGCCATTCGCCGTCTGGCTCGCCGTGGCGGCGTGAAGCGTATCTCCGGGCTGATCTACGAGGAGACCCGCGGTGTCCTGAAGGTGTTCCTTGAGAACGTGATCCGTGACGCCGTCACCTACACCGAGCACGCCAAGAGGAAGACCGTTACGGCCATGGACGTGGTCTACGCTCTGAAACGCCAGGGACGCACCCTGTACGGTTTCGGCGGTTAAACGCACTCTTCTCGGAACGTCAACATCCCGACTtgaac

Function

NR:

description
Histone H4

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036949942.1 False 404 mRNA 0.58 1 43232723 43233126
TU1661747 True 375 TUCP 0.59 1 43232746 43233120

Neighbor

gene id symbol gene type direction distance location
LOC118940454 LOC107745493 coding downstream 477 43231764 ~ 43232246 (-)
LOC118940447 LOC108414267 coding downstream 2029 43216516 ~ 43230694 (-)
LOC118940449 LOC101068541 coding downstream 4334 43227825 ~ 43228389 (-)
LOC118940457 LOC106958509 coding downstream 11840 43220480 ~ 43220883 (-)
LOC118940455 LOC107581013 coding downstream 12711 43219525 ~ 43220012 (-)
LOC110493834 LOC106565016 coding upstream 57202 43290328 ~ 43319713 (-)
LOC118940466 NA coding upstream 212851 43445977 ~ 43467043 (-)
LOC110493925 LOC106602209 coding upstream 580973 43814099 ~ 43823582 (-)
LOC110493928 LOC106562215 coding upstream 735452 43968578 ~ 43977740 (-)
lhfpl4a LOC106565251 coding upstream 944859 44177985 ~ 44252243 (-)
G1452269 NA non-coding downstream 87122 43145383 ~ 43145601 (-)
G1452259 NA non-coding downstream 165064 43067162 ~ 43067659 (-)
G1452256 NA non-coding downstream 169134 43063371 ~ 43063589 (-)
G1452254 NA non-coding downstream 172308 43060092 ~ 43060415 (-)
G1452296 NA non-coding upstream 11341 43244467 ~ 43244698 (-)
G1452300 NA non-coding upstream 15679 43248805 ~ 43254022 (-)
G1452310 NA non-coding upstream 38173 43271299 ~ 43273172 (-)
G1452313 NA non-coding upstream 44005 43277131 ~ 43277357 (-)
G1452331 NA non-coding upstream 92605 43325731 ~ 43325957 (-)
G1452260 LOC106958509 other downstream 100940 43079604 ~ 43131783 (-)
G1452248 NA other downstream 184656 43047343 ~ 43048067 (-)
LOC110493193 slc29a1 other downstream 249031 42971874 ~ 43012144 (-)
LOC110493189 LOC106595337 other downstream 274738 42956678 ~ 42957985 (-)
G1452381 NA other upstream 278165 43511291 ~ 43533523 (-)
G1452379 NA other upstream 326026 43500032 ~ 43565788 (-)
G1452422 NA other upstream 502833 43735959 ~ 43736723 (-)
G1453060 NA other upstream 921889 44155015 ~ 44155305 (-)

Expression

LOC118940458(LOC106958509) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 1500.
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LOC118940458(LOC106958509) Expression in each Bioproject

Bar chart with 15 bars.
LOC118940458(LOC106958509) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 5000.
End of interactive chart.

Co-expression Network