LOC118940459


Basic Information

Item Value
gene id LOC118940459
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 43319797 ~ 43330019 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC118940459
TGTGAACAATAGGCCATATACAAACTGTGTTTCACGTAGGTTTACCTGGCGGGACGTTTTGATAaacgtgtaaatctctctaggtaggacaaggtgacttttatcaacaTATTCGCCTGTATTTACTCCCGAAAAATGAAACGCTagttagctgctaatgtggctatcataaagagtTACAAATGctatgatctggacgagactgccgaaccgaggcaaagCTTGCAGAGGTATCACCACTCTTCCCATGGCCACCTGGATCCTGTCtagggaagaaaaagaagaatgaTGTTATTACATGGCCTTCAAGAGCTACATGACTGCTGAGGTGACATTATGGACCCCTTAGGATTTGTGGCATTCCTTGTGTATTTGTTTCCCGTTTGTGCCACTTCGTTTCTCCTTTGTACTTGTGACACTATTTGAGGTTTTAACGCCTATCTCTATTAGGTGTGACTGGCAACTGCAGTGGGTTGAATCCTACtagttcagtgtttcccaactccaggcaggggtagagtagccatttttgttgtagccctggagaggcacagctgattgaaagagttgaatcaggtgcaacaacaacaacaagaagaacaacaccaatcaatgtgaagagtgggacatcacagttgggccttgtgttcaacatagctcagtatttgagtgTGTTTCCCGCGCATGCAAGTAGCTTTGATTTCTTCTTCCTCCATAGTTCCCTAGAACGAACGCCCTCCCCTTTGCAGCAGAAGTTAGGCAAAAGTGTGCGCTTTCTGTGCCACTGGCTTCAATCAGGTCCACCAAACGCAGATAATAAGAGCACCAAGCACCGAAAATTACGTCATTAATTCACTTGAACTCAGCTAGCGAACACACGATGTCTGGAAGAGGTAAAGGCGGCAAGGGACTCGGAAAAGGAGGCGCCAAGCGTCACCGTAAGGTTCTCCGCGATAACATCCAGGGAATCACCAAGCCCGCCATTCGCAGTCTGGCTCGCCGTGGCGGCGTGAAGCGTATCTCCGGGCTGATCAACGAGGAGACCCGCGGTGTCCTGAAGGTGTTCCTTCACCTACACCGAGCACGCCAAGAGGAAGACCGTTACGGCCATGGACGCTCTGAAACGCCAGGGACGGTGCGTCCCTGTACGGTTTCGGCGGTTAAACGCACTCTTCTCGGAACGTCAACATCCCGACTtgaacccaaaggctcttttaagagtgttatataaatattcatacacatagctcatatattatACAGCGCTAAGCTAAACCGCCTGACTCAAGTCATCTTACGTACCCTTGCTAAAACAGGAACTAGCTCACACAGTCAGCAATAAAACTACCCCCCTAACACTATCCCCTCAGCTTTGTTGCCTCCCGACCCCAGGAAACAAAGACACTCCATCGCATGAACACATACACCCACCCATAAAAACTGCCCCTCTACCTCACGAACCCCTGACACAAACATCTCCTAGTATAAACACATCTCACCCCCCCTACTGGTCGGGTGCCAAGAGCAAAGgactttgctgtgcaccaatggggcccgctctggctagagcaaggcccgcctccaaccctttgtgaccagtcagaagaccaaaacgacaagactccacctactttattttatgtataaaaatgaatgtaaccgttgtataaggcctctttttcacctgactcCTTGCTGAGTTATATGAACTagatccgtgcacgtaaaactgcgggacaagatatctttgactcattaaaactgtcttttgtta

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC118940459 True 1774 mRNA 0.48 2 43319797 43330019

Neighbor

gene id symbol gene type direction distance location
LOC110493836 LOC106565017 coding upstream 49537 43260166 ~ 43270260 (+)
LOC110493924 LOC106591969 coding upstream 367599 42950528 ~ 42952198 (+)
LOC110493915 LOC106565264 coding upstream 543502 42770305 ~ 42776295 (+)
LOC110493912 LOC106565266 coding upstream 557688 42740378 ~ 42762109 (+)
LOC110493911 LOC106565269 coding upstream 687432 42599720 ~ 42632365 (+)
LOC110493832 LOC107715185 coding downstream 410 43330429 ~ 43330803 (+)
LOC118940144 LOC106024139 coding downstream 2296 43332315 ~ 43341386 (+)
LOC118940451 NA coding downstream 3411 43333430 ~ 43334041 (+)
LOC118940452 LOC108414267 coding downstream 11377 43341396 ~ 43342673 (+)
LOC118940450 LOC101068541 coding downstream 12735 43342754 ~ 43343223 (+)
G1452073 NA non-coding upstream 967 43315934 ~ 43318830 (+)
G1451953 NA non-coding upstream 46626 43272151 ~ 43273171 (+)
G1451958 NA non-coding upstream 47740 43271313 ~ 43272057 (+)
G1452048 NA non-coding upstream 67123 43250676 ~ 43252674 (+)
G1452043 NA non-coding upstream 74943 43244509 ~ 43244854 (+)
G1452364 NA non-coding downstream 167517 43497536 ~ 43497760 (+)
G1452366 NA non-coding downstream 169875 43499894 ~ 43517376 (+)
G1452369 NA non-coding downstream 178700 43508719 ~ 43565770 (+)
G1452394 NA non-coding downstream 237382 43567401 ~ 43574306 (+)
G1450387 NA other upstream 1429282 41792883 ~ 41890515 (+)
LOC110493897 LOC106565282 other upstream 1626079 41641874 ~ 41706180 (+)
LOC110493893 cdh22 other upstream 2351731 40767465 ~ 41084819 (+)
G1447998 NA other upstream 3519561 39799936 ~ 39800236 (+)
pmepa1 pmepa1 other upstream 3892897 39342991 ~ 39426900 (+)
G1452359 NA other downstream 152241 43482260 ~ 43483693 (+)
G1452362 NA other downstream 161155 43491174 ~ 43492068 (+)
G1452399 NA other downstream 276294 43606313 ~ 43606781 (+)
G1452804 LOC105896813 other downstream 1183050 44513069 ~ 44520477 (+)

Expression


Co-expression Network