Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC118940144 |
| gene name | LOC106024139 |
| gene type | misc |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048581.1 |
| NCBI id | CM023235.2 |
| chromosome length | 95212422 |
| location | 43332315 ~ 43341386 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| id | name | namespace |
|---|---|---|
| GO:0006334 | nucleosome assembly | biological_process |
| GO:0042742 | defense response to bacterium | biological_process |
| GO:0000786 | nucleosome | cellular_component |
| GO:0005576 | extracellular region | cellular_component |
| GO:0005634 | nucleus | cellular_component |
| GO:0003677 | DNA binding | molecular_function |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_036948407.1 | False | 648 | mRNA | 0.62 | 1 | 43332315 | 43332962 |
| TU1661378 | True | 490 | lncRNA | 0.58 | 2 | 43332567 | 43341386 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110493832 | LOC107715185 | coding | upstream | 1512 | 43330429 ~ 43330803 (+) |
| LOC118940459 | NA | coding | upstream | 2296 | 43319797 ~ 43330019 (+) |
| LOC118940518 | NA | coding | upstream | 8668 | 43323528 ~ 43323647 (+) |
| LOC110493836 | LOC106565017 | coding | upstream | 62055 | 43260166 ~ 43270260 (+) |
| LOC110493924 | LOC106591969 | coding | upstream | 380117 | 42950528 ~ 42952198 (+) |
| LOC118940451 | NA | coding | downstream | 468 | 43333430 ~ 43334041 (+) |
| LOC118940452 | LOC108414267 | coding | downstream | 8434 | 43341396 ~ 43342673 (+) |
| LOC118940450 | LOC101068541 | coding | downstream | 9792 | 43342754 ~ 43343223 (+) |
| LOC118940456 | LOC106958509 | coding | downstream | 14428 | 43347390 ~ 43348641 (+) |
| LOC118940453 | LOC107581013 | coding | downstream | 16101 | 43349063 ~ 43349732 (+) |
| G1452090 | NA | non-coding | upstream | 5383 | 43326718 ~ 43326932 (+) |
| G1452089 | NA | non-coding | upstream | 5617 | 43326395 ~ 43326698 (+) |
| G1452087 | NA | non-coding | upstream | 11293 | 43320785 ~ 43321022 (+) |
| G1452073 | NA | non-coding | upstream | 13485 | 43315934 ~ 43318830 (+) |
| G1451953 | NA | non-coding | upstream | 59144 | 43272151 ~ 43273171 (+) |
| G1452364 | NA | non-coding | downstream | 164574 | 43497536 ~ 43497760 (+) |
| G1452366 | NA | non-coding | downstream | 166932 | 43499894 ~ 43517376 (+) |
| G1452369 | NA | non-coding | downstream | 175757 | 43508719 ~ 43565770 (+) |
| G1452394 | NA | non-coding | downstream | 234439 | 43567401 ~ 43574306 (+) |
| G1452398 | NA | non-coding | downstream | 266698 | 43599660 ~ 43599912 (+) |
| G1450387 | NA | other | upstream | 1441800 | 41792883 ~ 41890515 (+) |
| LOC110493897 | LOC106565282 | other | upstream | 1638597 | 41641874 ~ 41706180 (+) |
| LOC110493893 | cdh22 | other | upstream | 2364249 | 40767465 ~ 41084819 (+) |
| G1447998 | NA | other | upstream | 3532079 | 39799936 ~ 39800236 (+) |
| pmepa1 | pmepa1 | other | upstream | 3905415 | 39342991 ~ 39426900 (+) |
| G1452359 | NA | other | downstream | 149298 | 43482260 ~ 43483693 (+) |
| G1452362 | NA | other | downstream | 158212 | 43491174 ~ 43492068 (+) |
| G1452399 | NA | other | downstream | 273351 | 43606313 ~ 43606781 (+) |
| G1452804 | LOC105896813 | other | downstream | 1180107 | 44513069 ~ 44520477 (+) |
| LOC110493838 | LOC106565014 | coding | downstream | 28004 | 43369390 ~ 43395004 (+) |
